Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_019717.1 Length=45366 Score E Sequences producing significant alignments: (Bits) Value seq201909 183 9e-42 seq259146 158 3e-34 seq11972 152 1e-32 seq75855 138 3e-28 seq194023 129 2e-25 seq187742 127 6e-25 seq84525 123 7e-24 seq124819 98.7 3e-16 seq287938 96.9 1e-15 seq210549 87.8 5e-13 seq79893 87.8 5e-13 >seq201909 Length=21394 Score = 183 bits (202), Expect = 9e-42 Identities = 269/380 (71%), Gaps = 2/380 (1%) Strand=Plus/Minus Query 44036 ATCAGCCTTATCGGGATGTTGTTGGAGTGTGGACTGTATGCTGGGGCCATACTGGTAAAG 44095 || |||| |||| |||||| || || || |||||||| |||| || || ||||| | Sbjct 4641 ATAAGCCCTATCAGGATGTCGTCGGCGTATGGACTGTTTGCTACGGTCACACTGGGGCCG 4582 Query 44096 ATATTATCCTCGGCAAGACCTACACCAAAGCAGAGTGTCGAGCGTTACTTAATAAAGACC 44155 | || ||| |||| ||||||||| |||| ||||| | ||| | || |||||||||| Sbjct 4581 ACATCATCAAAAGCAAAACCTACACCGAAGCTGAGTGCCAGGCGCTGCTGAATAAAGACC 4522 Query 44156 TCACCACCGTAGCGCAGCAGATTAATCCGTACATCAAGGTTCCGATCCCTGAAACTACTC 44215 | || || || | |||||| | || | ||||| ||||||||| || || || | Sbjct 4521 TGCGAACGGTGGCTAATCAGATTGACCCTTTAATCAAACGTCCGATCCCCGACACGACGC 4462 Query 44216 GGGGCGCTCTTTACTCGTTTGTCTACAACGTCGGTGCTGGCAATTTCAAAACCTCCACTC 44275 | | ||||| ||| ||| ||||||||||| ||||| ||| || || | Sbjct 4461 GAGCAGCTCTCATCTCATTTTCATACAACGTCGGCGCTGGAGCATTCCGCCAGTCAACCC 4402 Query 44276 TTCTCTACAAAATAAACCAGGGTGATATCAAAGGCGCATGTGATCAGCTTCGTCGATGGA 44335 | || | ||||| ||| ||||| | ||| ||||| | | || || ||||||| Sbjct 4401 TGCTGAAGAAAATCAACGCAGGTGACACTGTAGGTGCATGCAACGAACTACGCCGATGGA 4342 Query 44336 CATATGCCGGTGGTAAGCAATGGAAAGGGTTGATTACCCGGCGTGAGATTGAGCGTGAAG 44395 | || || || || ||||| |||||||| |||| | |||||| ||||| |||||||||| Sbjct 4341 CCTACGCAGGCGGCAAGCAGTGGAAAGGTCTGATGAACCGGCGCGAGATAGAGCGTGAAG 4282 Query 44396 TTTGCCTGTGGG--CAGAAA 44413 |||| ||||||| |||||| Sbjct 4281 TTTGTCTGTGGGGTCAGAAA 4262 Score = 116 bits (128), Expect = 1e-21 Identities = 166/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 36005 GAGCAGGTGGCGCAGGTATTCAACAAGCTGTTCAACGAGCTGCGCGCCGCGTTCCCGGCC 36064 ||||||| || || | ||||| || |||||| ||||| | ||| |||||||| Sbjct 11625 GAGCAGGCCGCTCAAATCTTCAATGAGTTGTTCAGGCAGCTGAAGGGCGCTTTCCCGGCA 11566 Query 36065 AGCATGGCGAACTTCCGCACCCAGGAAGACCTGAACGAATTCCGCCGTCAGTGGCTGCTG 36124 ||||| | | || ||||| ||||| | ||||| | || || |||||| || || Sbjct 11565 CTGATGGCAAGCATCAAAACCCAAGAAGAGTTAAACGAGCTGCGGCGCCAGTGGGTGATG 11506 Query 36125 GCGTTTCAGGAGAACGGGATCCACACCATGGCTCAGGTCGATGCCGGCATGCGCATTGCC 36184 || ||| || ||||| || || || | ||||| | ||||| ||| |||||| Sbjct 11505 GCCTTTGCTGAAAACGGCATTACGACAATCGACCAGGTTAACGCCGGGATGAAGATTGCC 11446 Query 36185 CGCCGCCAGGAGCGCCCATTCCTGCCGTCGCCGGGCCAGTTCGTCGCCTGGTGC 36238 |||| ||||| || ||||| |||||||||||||| ||||||||||||||| Sbjct 11445 CGCCAGCAGGAAACGCCTTTCCTCCCGTCGCCGGGCCAATTCGTCGCCTGGTGC 11392 >seq259146 Length=2880 Score = 158 bits (174), Expect = 3e-34 Identities = 174/232 (75%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 44780 GACCTGTGATCTGCCTGTTCCTGCTGATGTCGCTGGTGGGCTGCTCGAATACGCGCACCG 44839 |||||||| ||| |||||||||||| | ||||||| |||||||||| ||| ||| | Sbjct 181 GACCTGTGCTCTCGCTGTTCCTGCTGCTATCGCTGGCAGGCTGCTCGACTACACGCTTAG 240 Query 44840 TTTACGTGCCAGCGCAATGCACGCCGATACCGACGGACCTAACGCAGCCGATGATAGTAC 44899 | ||||| ||||||||||||||||| || | | | | | | |||| ||| | |||| Sbjct 241 TCTACGTTCCAGCGCAATGCACGCCTATCCGGGCCTCGTTGATGAAGCCAATGCTGGTAC 300 Query 44900 CGCTGCCGCCGGCTCAATAACGTACTGCCAGGCTGTGCTCTGGATTAAGCCGCTGCTGGC 44959 ||||||| ||||| | | |||||||| ||||| || || |||||| | || |||| | Sbjct 301 CGCTGCCCCCGGCCCCCTGACGTACTGTCAGGCGGTACTGTGGATTGACCCATTGCTAAC 360 Query 44960 CGTGATTGAGAAGGGCAACAATAACCTGGCTGGCATACGGCAGATTGAAAAA 45011 | |||||| ||| ||||| | ||||||||||| || | |||||| || Sbjct 361 GGCGATTGACCAGGCCAACAGCCAACTGGCTGGCATCCGAGACATTGAACAA 412 >seq11972 Length=3077 Score = 152 bits (168), Expect = 1e-32 Identities = 147/189 (78%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 44780 GACCTGTGATCTGCCTGTTCCTGCTGATGTCGCTGGTGGGCTGCTCGAATACGCGCACCG 44839 |||||||| ||||||||| ||||||| | ||||||| || ||||||| ||| || | || Sbjct 181 GACCTGTGCTCTGCCTGTGCCTGCTGCTATCGCTGGCCGGTTGCTCGACTACACGAATCG 240 Query 44840 TTTACGTGCCAGCGCAATGCACGCCGATACCGACGGACCTAACGCAGCCGATGATAGTAC 44899 | ||||||||||||||||||||||| || ||| | | | | |||| ||| | |||| Sbjct 241 TCTACGTGCCAGCGCAATGCACGCCTATCCCGGCCTCGTTGATGAAGCCAATGCTGGTAC 300 Query 44900 CGCTGCCGCCGGCTCAATAACGTACTGCCAGGCTGTGCTCTGGATTAAGCCGCTGCTGGC 44959 | ||||| ||||| | | || ||||||||||| ||||| |||||||| | ||| ||| | Sbjct 301 CACTGCCCCCGGCACCCTGACTTACTGCCAGGCGGTGCTGTGGATTAATCAGCTACTGAC 360 Query 44960 CGTGATTGA 44968 || || || Sbjct 361 AGTCATCGA 369 >seq75855 Length=31220 Score = 138 bits (152), Expect = 3e-28 Identities = 309/461 (67%), Gaps = 16/461 (3%) Strand=Plus/Plus Query 16181 GAGGTCATTGACGCCAAACTGCGTTATCCAAACACCGCGCTGTTGTACATCGAATTCGAC 16240 ||||| || ||| |||||||||||||||||| || || || | || ||||| | || Sbjct 12493 GAGGTTATCGACAGCAAACTGCGTTATCCAAATACTGCTCTACTTTATGTCGAAGTGGAT 12552 Query 16241 TCAAGCCAGTTTAACGGCTCTATCCCGCAAATATCC--TGCGAACCGCGAGG---GCGTG 16295 || || ||||| ||| | | |||| ||| ||| | ||| ||| || | Sbjct 12553 GCATCGCAATTTAATGGCC--AGGCACCAAAGATCACATGCAAGCCGAAAGGCAAGCTGG 12610 Query 16296 TAATCCGCGTTCCGGATACGTATGACCCGGAGACCCGCACCTATAGCGGCACATGGACGG 16355 || ||||||||| | || || || | | | | || || ||||| || ||| || Sbjct 12611 TA---CGCGTTCCGACGAATTACGAACCTGTTAGCAGGACTTACAGCGGAACCTGGCTGG 12667 Query 16356 GGGCGTTTAAGTGGGCGTGGACGGATAATCCAGCCTGGATTTTTTACGATCTGGTGGTGA 16415 | | || || | || | || ||||||| || ||||||||||||||||||||| || Sbjct 12668 GCGACTTCAAATACGCTTACACCAATAATCCGGCATGGATTTTTTACGATCTGGTGCTGG 12727 Query 16416 GCGACCGCTTTGGGCTGGGCAATCGCCTGACGGCGGCCAATATTGATAAATGGACGCTTT 16475 | || ||| |||||| ||| | || ||| ||||| | ||| ||| | Sbjct 12728 ATAAAATCTGTGGTATGGGCACGCGCGTTGATGCCTCCATGATTGACAGGTGGGAGCTGT 12787 Query 16476 ACCAGGTCGCGCAATATTGCGATCAGCCGGTTCCTGATGGTAAAGGCGGTAGCGGCACTG 16535 || ||||||| || |||||||| ||| || || |||| | ||||||||| Sbjct 12788 ACTCAATCGCGCAGTACTGCGATCAAATGGTGCCA------AACGGCGCTGGCGGCACTG 12841 Query 16536 AGCCTCGCTATACCTGCAACGTGTATGTGCAGGAGAGGAATGACGCCTATACCGTGTTAC 16595 |||| |||| |||||||||||||| | | ||| | | || |||||||| || | Sbjct 12842 AGCCGCGCTTTACCTGCAACGTGTTTATCCAGAGCCAGCAGGATGCCTATACAGTCCTGA 12901 Query 16596 GAGATTTTGCGGCGATATTCCGGGGCATGACTTACTGGGGT 16636 || |||||||||||||||| || || || | ||||||| Sbjct 12902 AGGACATTGCGGCGATATTCCGAGGAATCACGTTCTGGGGT 12942 >seq194023 Length=5833 Score = 129 bits (142), Expect = 2e-25 Identities = 225/326 (69%), Gaps = 1/326 (0%) Strand=Plus/Minus Query 33456 AATGGCATACAGTTTCCCATCAACTATGCGTTTGTTGTTCGTATCGACGGCTACAGTCGT 33515 |||||| |||| || ||||||| || ||||| || || | | || || || | Sbjct 3317 AATGGCGTACATCTTGCCATCAATGATTTTTTTGTCGTCTGTGTTTATAGCCACCGTTGC 3258 Query 33516 ACCATCCGGTATCACAGGTTCCATGCTGTCGCCAGTAGCAGGGAAACACAGGATGCCAGA 33575 |||||| | || || ||||||||||| ||| ||| || || || || || || || Sbjct 3257 ACCATCAGAGATTTTTGGCTCCATGCTGTCACCACGAGCGGGAAAGCATAGAATTCCCGA 3198 Query 33576 CCCATCTGTGTTAGCTCCAACGCGGCGGAGGGTTGCCTTTGAGAACCTGAGCTTAAAACC 33635 ||||| ||||| || || || || || || || || || || || | ||| |||| || Sbjct 3197 ACCATCGGTGTTGGCACCGACACGCCGCAGTGTGGCTTTAGAAAATCGAAGCATAAATCC 3138 Query 33636 ATTGTGATCTTCGCTGTGTACGCGTCCATCGCCACACGCAAATTCAATATCCTTAAGAAA 33695 || | || || | |||| || | ||| || |||||||| ||||| || | ||| Sbjct 3137 GTTATAGTCCTCATCGGAGACGCTACCGTTGCCGCAAGCAAATTCGATATCTTTTAAAAA 3078 Query 33696 TGGCACTTCAACCTCATCAACAGGAAGCGGGGTGTCTTTATCCCATGCATCAACAACTCC 33755 ||| || ||||| |||||| | ||||||||| ||||||| ||| || | || || | Sbjct 3077 TGGAACCTCAACTTCATCATCTTCAAGCGGGGTTTCTTTATTCCACGCCTTTACTCCTTC 3018 Query 33756 CCACTCAGACTCTGGCGGGAT-GTTG 33780 ||| ||| ||||| || || |||| Sbjct 3017 CCATTCATTTTCTGGTGGAATAGTTG 2992 >seq187742 Length=2667 Score = 127 bits (140), Expect = 6e-25 Identities = 202/289 (70%), Gaps = 3/289 (1%) Strand=Plus/Plus Query 18476 AACGGTCAGGTGTTTATCAGCTCAGCGTTTATTCAGGATGGCACGATCACCAATACCAAA 18535 ||||| ||||| || | |||| ||||||||||||||||| |||| || ||| Sbjct 2341 AACGGGCAGGTATTCCTGCGCTCTGCGTTTATTCAGGATGGGTCGATAGATAACCTAAAA 2400 Query 18536 ATCGGTAACTTTATCCAGTCGAACAATTATGTTGCCGGCTCTGTTGGCTGGAAACTGGAT 18595 ||||| | ||||| ||||| ||||| ||||||||||| || ||| ||| |||| | Sbjct 2401 ATCGGACAGTTTATACAGTCAAACAACTATGTTGCCGGGTCAACTGGTTGGCAACTAAAC 2460 Query 18596 AAGTCCGGGACGTTTGAGAACTACGGTTCGACAGCTGGGGAGGGAGCCATGAAGCAGACC 18655 || | || || |||| |||||||| | || ||||| ||| ||||||||| | Sbjct 2461 AAAGCTGGAACATTTGTAAACTACGGGGCTGTGGCCGGGGAAGGAAAGATGAAGCAGGAC 2520 Query 18656 AACCAGACAATCAGCGTCAAGGATGGCAACAACGTTCTGAGAGTGCAGGTTGGCCGATTA 18715 || | || |||||||| || || ||| ||||| | || ||| |||| || | Sbjct 2521 AATAACACCATCAGCGTTGCCGACGGTAACGGAGTTCTTCGGGTCCAGATTGGTCGTATT 2580 Query 18716 ACGGGGGTGTTCTGATATGGCT---TATGGAATACAGACCTGGGATGCT 18761 |||||||| |||| | |||||| | || ||| || ||||||||| Sbjct 2581 ACGGGGGTATTCTAAGATGGCTGAATGGGGCATAGCTACTTGGGATGCT 2629 >seq84525 Length=6380 Score = 123 bits (136), Expect = 7e-24 Identities = 201/289 (70%), Gaps = 3/289 (1%) Strand=Plus/Minus Query 18476 AACGGTCAGGTGTTTATCAGCTCAGCGTTTATTCAGGATGGCACGATCACCAATACCAAA 18535 ||||||||||| || | | || ||||||||||||||||| | || |||| | ||| Sbjct 3694 AACGGTCAGGTATTCCTGCGATCTGCGTTTATTCAGGATGGTTCAATAGACAATGCAAAA 3635 Query 18536 ATCGGTAACTTTATCCAGTCGAACAATTATGTTGCCGGCTCTGTTGGCTGGAAACTGGAT 18595 || ||||| || |||||||| ||||| ||||| || || || ||| ||| | || | Sbjct 3634 ATAGGTAATTTCATCCAGTCAAACAACTATGTCGCTGGGTCGACTGGTTGGCAGCTAAAC 3575 Query 18596 AAGTCCGGGACGTTTGAGAACTACGGTTCGACAGCTGGGGAGGGAGCCATGAAGCAGACC 18655 || | || || |||| |||||||| || || ||||| || ||||||||| | Sbjct 3574 AAAGCTGGAACATTTGTAAACTACGGCTCTGTGGCCGGGGAAGGCAAGATGAAGCAGGAC 3515 Query 18656 AACCAGACAATCAGCGTCAAGGATGGCAACAACGTTCTGAGAGTGCAGGTTGGCCGATTA 18715 || | || |||||||| || |||||| ||||| | || ||| | | || | Sbjct 3514 AATAACACCATCAGCGTTGCTGACGGCAACGGAGTTCTTCGGGTCCAGATGTGTCGTATT 3455 Query 18716 ACGGGGGTGTTCTGATATGGCT---TATGGAATACAGACCTGGGATGCT 18761 |||||||| |||| | |||||| | || ||| || ||||||||| Sbjct 3454 ACGGGGGTATTCTAAGATGGCTGAATGGGGCATAGCTACTTGGGATGCT 3406 Score = 100 bits (110), Expect = 8e-17 Identities = 183/262 (70%), Gaps = 17/262 (6%) Strand=Plus/Minus Query 19881 TTGAGAAACAGGAACCAGTTTGCAGCGGCACTGCAATCGTTGGCGGTCAGGAAACTACGG 19940 |||||||||| || || || ||| |||| || | || ||||||||| ||| | Sbjct 2303 TTGAGAAACAAGAGCCTGTATGCCAAGGCAAAGCCGTTATTTCTGGTCAGGAATCTATTG 2244 Query 19941 TTCAGATTTACGGTGTGCGTAAACAAAACAACCAGACGCAGTACCGGGCTGGATATCCTT 20000 | |||||||| ||||||||| | || || || || |||||| || || ||||||| Sbjct 2243 TACAGATTTATGGTGTGCGTCAGCAGGCAAATCAAACCCAGTACAAAGCCGGTTATCCTT 2184 Query 20001 TCAGCTGGCGCTGGGTAAGTGCGAATACATTTACCGAAACAACCTGC---AAATAACCCA 20057 ||| ||||| ||||||||| ||||| || ||| |||||| || ||||| | || Sbjct 2183 TCAACTGGCAATGGGTAAGTAAGAATAATTTCACCCGAACAACATGTGATAAATAGCTCA 2124 Query 20058 CTACGCTTAAACATAA----ACCTCGCT-CCG-GCGGGGTTTTTTATTGCCCGAAAGGAG 20111 | || |||||| | ||| || ||| || ||||||||||||||||| | | Sbjct 2123 C-AC----AAACATCATTGAACCCGGCCACCGTGCCGGGTTTTTTATTGCCCGGAGATAA 2069 Query 20112 CGCATATGTCTGCAGGAACTAT 20133 | |||| | ||||| ||||| Sbjct 2068 C---TATGCCAGCAGGCACTAT 2050 >seq124819 Length=1803 Score = 98.7 bits (108), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 3/203 (1%) Strand=Plus/Minus Query 20822 TTTGGAAATCAATACCCCGGATACAATGCTGACGTTAAAGTATCCAGAGATAAAGATGAT 20881 || |||||||| | || ||||| ||||| ||| |||| ||| ||||||||| || Sbjct 1192 TTCGGAAATCAGAATCCAGGATATAATGCAGACATTAAGTTATGCAGAGATAATGACTCC 1133 Query 20882 GGCAGTGGGCTATTAACAACATATTTAACCGTCAGCGTTAAAACTCCTCAGACAGGCTGG 20941 || | ||| ||||||| | ||| | || | |||||||| || || ||||| ||| Sbjct 1132 GGAACTGGTTTATTAACGAGTTATGTCACTATTTCTGTTAAAACACCACAAACAGGATGG 1073 Query 20942 ACCCCTTATTTTCATATAAGAGTGGTGGGGTATTGATATGAAATATTTTTACAGCATCAG 21001 ||||||||||| ||| | || | |||||||||||||| || ||| || || | Sbjct 1072 GTTCCTTATTTTCAGATATCACTGATAGGGTATTGATATGATGTACTTT---AGTATAAA 1016 Query 21002 CACGCAGGGATTTTACCTCGATA 21024 | |||||||| |||| |||| Sbjct 1015 TAGTCAGGGATTCTACCCTGATA 993 >seq287938 Length=17746 Score = 96.9 bits (106), Expect = 1e-15 Identities = 169/244 (69%), Gaps = 4/244 (2%) Strand=Plus/Minus Query 21448 AATTAATCAGCAACCAGCCACATGTCAGATTCTTCAAACATCTCTTCAAGCATACGATTA 21507 |||| |||| |||| |||| || | ||| |||||||||||||||| || || Sbjct 3675 AATTCTTCAGACACCATCCACTGATCGGCTTCCTCAAACATCTCTTCAATAATGCGTAAC 3616 Query 21508 AGCCGTTCTTTCTCTGTTTTCGTGCAGTTGCTGTTTAGCGCGTTCGCCTGCATCGGCTTT 21567 ||| || || |||| || || || || | |||| ||||||||||| ||| Sbjct 3615 AGCGTGGACTTATCGCTTTTACTGGCGTCACTTTTCACGCCGTTGGCCTGCATCGGTTTT 3556 Query 21568 ACCTTCACTTCGGCACCAGGGAAAATCTGGTGCACCCGCTTCGTCAGTTCGGCCAGAATG 21627 ||||| || ||| | || || | | ||||| ||||| ||| |||||||| || Sbjct 3555 ACCTTGACCAGCGCATCGGGAAACACACGCTGCACGCGCTTTTCCAGCTCGGCCAGGATC 3496 Query 21628 ATCTCCCTGGCCCCTTCG--AGCCCCTCAACATTTCGCTTGTCATAAACCAGTTCAACAA 21685 | || ||| |||| || ||| |||| || ||||||||||||| ||||||||||| Sbjct 3495 AGCTGTTCGGCA--TTCGGCAGACCCGCAACGTTGCGCTTGTCATAAATCAGTTCAACAA 3438 Query 21686 ACAT 21689 |||| Sbjct 3437 ACAT 3434 >seq210549 Length=977 Score = 87.8 bits (96), Expect = 5e-13 Identities = 59/65 (91%), Gaps = 1/65 (2%) Strand=Plus/Plus Query 43426 AATTGTCTGTGGAATGACCAATTTAGCAATTTCCTTTGTCTGTGGAAAGCAGGGAAACCA 43485 ||||||||||||||| |||||| ||||| ||||||||||||||||||||||||| || | Sbjct 31 AATTGTCTGTGGAATAACCAATCTAGCAGTTTCCTTTGTCTGTGGAAAGCAGGGGAAGC- 89 Query 43486 CGCGC 43490 ||||| Sbjct 90 CGCGC 94 >seq79893 Length=11432 Score = 87.8 bits (96), Expect = 5e-13 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 12436 GGGATTTGCAGGTGGCGGTTATACCGGTTCAGGCGGGAAATATGAGCCAGCAGGTGTCGT 12495 ||||| || | || || ||||| || || ||||| |||||||| ||| || || Sbjct 5045 GGGATATGACGAGGGTGGATATACTGGAGACGGTGGGAAGTATGAGCCCAAAGGCGTGGT 5104 Query 12496 TCACCGTGGTGAGTTTGTTTTCACCAAAGAGGCTACCAGCCGGATCGGCGTCGGCAATCT 12555 || | |||||||||||||||||||||||||| ||| || ||||||||| || || Sbjct 5105 GCATGGCGGTGAGTTTGTTTTCACCAAAGAGGCGACCCAGCGTATCGGCGTCAAAAACCT 5164 Query 12556 TTACCGGATGATG 12568 |||| | |||||| Sbjct 5165 TTACGGCATGATG 5177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144189709799456