Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_019723.1 Length=47090 Score E Sequences producing significant alignments: (Bits) Value seq201909 412 1e-110 seq369136 138 3e-28 seq123396 104 7e-18 >seq201909 Length=21394 Score = 412 bits (456), Expect = 1e-110 Identities = 456/603 (76%), Gaps = 6/603 (1%) Strand=Plus/Minus Query 31160 TCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTC 31219 ||| |||||||| || ||||| | || || |||||||| || | ||||||||| || Sbjct 20630 TCACCGCCATTGGTCGCCAAACTCGAAGCCTATTTCAGCGAGCGAGATGTCCATTTTCTC 20571 Query 31220 GATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTTCATCCCGCTCAATCAC 31279 ||||||||||||||| || || ||||| | ||||| ||||| || ||||||| | Sbjct 20570 GATGAACTCCGGCACCATTTCCTCAAAGTCAGAAATGTATTTTTCGTCACGCTCAACGAT 20511 Query 31280 GACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATT 31339 | | ||| | |||||||||||||| || ||||||||||| || || |||||||||| Sbjct 20510 AATGTGATGAATACCTTCACGCTTCATGCGAGGGTCATAGTTCGCGAAATACCAGGCATC 20451 Query 31340 TTTTCGCGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCTGACTTT--ATGGCC 31397 || | ||| |||||||||||||| ||||||||||||||||| || ||||| ||||| Sbjct 20450 CTTGCCCGTTACCCACATGCTGTATTGCACCTGGGCCATGTACGC--ACTTTTGATGGCA 20393 Query 31398 TCGAAACCACCGAGCCGGAACTTCATGAAATCCCGGGAGGTAAACGGGCATTTCAGTTCA 31457 ||||||||||| |||||||||||||||||||| || || || || ||||| |||| ||| Sbjct 20392 TCGAAACCACCAAGCCGGAACTTCATGAAATCGCGAGAAGTGAAAGGGCACTTCAATTCG 20333 Query 31458 AGGCCGTTGCCGTCACTGCATAAACCATCGGGAGAGCAGGCGGTACGCATACTTTCGTCG 31517 ||||| || |||||||| | || || || ||||| |||||||||| | || ||| Sbjct 20332 AGGCCTCGCCCATCACTGCAAATCCCGTCAGGTGAGCACGCGGTACGCAAAGAATCATCG 20273 Query 31518 CGATAGATGATCGGGGATTCAGTAACATTCACGCCGGAAGTGAATTCAAACAGGGTTCTG 31577 ||||||| ||| || | ||||| ||| ||||| | ||||| ||||| || | ||| Sbjct 20272 CGATAGAGGATTGGCGCCTCAGTTACAGATACGCCAGTGGTGAACTCAAAAAGAGCTCTC 20213 Query 31578 GCGTCGTTCTCGTACTGTTTTCCCCAGGCCAGTGCTTTAGCGTTAACTTCCGGAGCCACA 31637 || || || | ||| || ||||| || ||||| || || || || ||||||||||| Sbjct 20212 GCTGAGTCTTCATGCTGCTTACCCCACGCAAGTGCCTTGGCATTCACCTCCGGAGCCACG 20153 Query 31638 CCGGTGCAAACCTCAGCAAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGCCACTTC 31697 || ||||| ||||| || | || ||||||||||||||| |||||||| | ||| || Sbjct 20152 CCAGTGCATACCTCTGCTAACAACTCGTGGAAGTAGGACATCTTCATGTCCGTCCATTTG 20093 Query 31698 TTTCCGGAGCGGGGTTTTGCTATCACGTTGTGA-ACTTCTGAAGCGGTGATGACGCCGAG 31756 | ||| ||| || |||| || ||||| ||| || || || || ||||||||||| Sbjct 20092 GTGCCGCTGCGTGGCTTTGAAATGACGTT-TGATACACACGACGCCGTAATGACGCCGAG 20034 Query 31757 CCG 31759 || Sbjct 20033 TCG 20031 Score = 284 bits (314), Expect = 4e-72 Identities = 282/365 (77%), Gaps = 0/365 (0%) Strand=Plus/Minus Query 35517 GCAACGCCTATAATCTTGCAGTTTCCATTGATTGGCACGAGAGGCCATGCAGGATTAAGT 35576 || || || |||||||||||||| || ||||| || || | ||||||| || ||||| Sbjct 14757 GCCACACCGATAATCTTGCAGTTACCGTTGATAGGAACCATAGGCCATTGCGGGTTAAGC 14698 Query 35577 CCCTTGAGGTATTTATTTCCGCCGTCGATTATCAGCTTCTTGAATGTTGCTTCGTTAGAG 35636 ||||||||||| || | |||||||||||| ||||| ||| || || || ||||| ||| Sbjct 14697 CCCTTGAGGTACTTCTGTCCGCCGTCGATAATCAGGCGCTTAAAGGTGGCCTCGTTTGAG 14638 Query 35637 TCAGAAAGTTTTGCTATGACCAAGCTGCCGTTGATCGCCTCCCTTCCGGTATCGAAAAGA 35696 || ||||| || ||||| || | |||| ||||||||| || || |||||||| ||||| Sbjct 14637 TCCGAAAGCTTCGCTATCACTAGGCTGTTGTTGATCGCATCTCTGCCGGTATCAAAAAGC 14578 Query 35697 ACGAATGTTCCCTCTGGAATGCTTAACCCAACCGGTGCCGTCATTGAATCACCTTCCACT 35756 || || || || || || || ||| |||| | || || ||||| ||||||||||| ||| Sbjct 14577 ACAAACGTGCCTTCAGGTATACTTGGCCCAGCAGGGGCAGTCATCGAATCACCTTCTACT 14518 Query 35757 TTAAGCCAGAACGCATTACCTTGAATATGCGCGTCAGACTCAAGCCAAACATCTATGTCT 35816 | |||||||||||||| |||||| || || || |||||||||||||| | || || || Sbjct 14517 TCAAGCCAGAACGCATCACCTTGTATGTGAGCATCAGACTCAAGCCAGAGGTCAATATCC 14458 Query 35817 TTAATGGTGTATGGTTCGCATGCTTCACACCACGAGCCAGCCTGGATACTGCTTAACACC 35876 |||| || |||| |||||| || ||| ||| | ||||||||| | |||| | |||| Sbjct 14457 TTAAGCGTATATGCTTCGCAAGCCTCAGCCCATGCGCCAGCCTGCACCTTGCTGAGCACC 14398 Query 35877 GGATA 35881 || || Sbjct 14397 GGGTA 14393 Score = 86.0 bits (94), Expect = 2e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 44520 TGACATGCAGATGCGTCAGCGTGATGTTGCTGCGCTCGATGCAAAATACACGAAGGAGTT 44579 ||| ||||||| || ||||| ||||||||||| || || || || ||||| |||||||| Sbjct 4116 TGATATGCAGACACGCCAGCGCGATGTTGCTGCTCTGGACGCCAAGTACACAAAGGAGTT 4057 Query 44580 AGCTGATGCTAAAGCTGAAAATGATGCTCTGC 44611 ||| ||||| ||||||||| | |||| ||| Sbjct 4056 AGCCGATGCACAAGCTGAAACTACTGCTTTGC 4025 >seq369136 Length=224 Score = 138 bits (152), Expect = 3e-28 Identities = 138/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 31160 TCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTC 31219 ||| |||||||| || |||||| | || || ||||||||||| | ||||||||||| Sbjct 44 TCACCGCCATTGGTCGCCAAATTCGAAGCCGATTTCAGCCAGAGATAAATCCATTTTTTC 103 Query 31220 GATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTTCATCCCGCTCAATCAC 31279 |||||| |||||||| || || || || | |||||| ||||| || ||||||| | Sbjct 104 GATGAATTCCGGCACCATTTCTTCGAAGTCGGACATGTATTTTTCGTCACGCTCAACGAT 163 Query 31280 GACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCAT 31338 | | ||| | |||||||||||||| || ||||||||||| || || |||||||||| Sbjct 164 TATGTGATGAATACCTTCACGCTTCATGCGAGGGTCATAGTTCGCGAAATACCAGGCAT 222 >seq123396 Length=12579 Score = 104 bits (114), Expect = 7e-18 Identities = 139/192 (72%), Gaps = 1/192 (1%) Strand=Plus/Minus Query 36032 GTTTAGCGCGTTTCTGCCATTAAGATAATGCCCTACCGCTCCTTGGGTGATACCCAGTTC 36091 ||||| || || | ||||| ||||| ||||| || || | |||||| || || || Sbjct 7034 GTTTAAAGCATTGCGTCCATTCAGATAGTGCCCAACAGCACTTTGGGTAATGTTCATCTC 6975 Query 36092 ATCAGCGATTGAGTATTGGGTTATTCCCAATTCTTTCTTTTTTGACTCATACAAAGCCTT 36151 |||||| || | || || || || | | ||| || || |||||||||| ||| || Sbjct 6974 ATCAGCAATGTGCTGCTGAGTAATACCAAGATTTTTTTTCTTGGACTCATACAGAGCTTT 6915 Query 36152 AAGCCGCTTAGCGTCTTCGAGCTGTTCTGTCGTCAGTGATTTTTTATTTTCCATAGCTTA 36211 ||| || || |||||||| ||||||||||||||||| ||| | ||| ||||| || Sbjct 6914 AAGGCGTTTGGCGTCTTCAAGCTGTTCTGTCGTCAGGAGCTTTGTCGTTTTCATAG-TTT 6856 Query 36212 ATTCTAATAGCT 36223 ||| ||||| || Sbjct 6855 ATTTTAATACCT 6844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149673804833304