Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_019767.1 Length=40155 Score E Sequences producing significant alignments: (Bits) Value seq196645 185 2e-42 seq79893 120 8e-23 seq123396 114 3e-21 seq37562 114 3e-21 seq75855 100 7e-17 seq153530 89.7 1e-13 >seq196645 Length=3446 Score = 185 bits (204), Expect = 2e-42 Identities = 279/395 (71%), Gaps = 4/395 (1%) Strand=Plus/Minus Query 24448 CTGATGTTTATGCTCGTCTGTATCTGCATCTTTCGCATCATCAATGCCGAATAAACCATT 24507 ||| || | | |||| ||||| || ||||| || | |||||||| | || | | |||| Sbjct 3365 CTGGTGATGAAGCTCATCTGTGTCAGCATCCTTTGAGTCATCAATATCAAACAGAACATT 3306 Query 24508 GAGGCAATACTTGCGTGCATAAGAGCTTGTAGCTCCCGTAACTTGTGCAGAATCCATTCC 24567 || |||||||| | |||||| || || || || || ||||| || || || |||||||| Sbjct 3305 AAGACAATACTTCCTTGCATACGAACTAGTTGCCCCAGTAACCTGAGCCGAGTCCATTCC 3246 Query 24568 TTTCTTGCTTTCTTCCTCTCGTGCAAGAGCGGTTGCCGTATGACTGTT--TTCGCCATCG 24625 |||||||| || || || | ||| | || | |||||||| |||| ||| || || Sbjct 3245 CTTCTTGCTCTCCTCTTCCCTTGCCAAGGCACTCGCCGTATG--TGTTGATTCACCGTCT 3188 Query 24626 GTAATAGTTGCCGTGGCTTTCACGTAATACCGATCACCAATCAACACAACTTCATCGCTG 24685 ||||| ||||| || | || || || ||| || |||| |||||||| || Sbjct 3187 GTAATCGTTGCTACAGCCCTGACATAGTAACGACTCCCTATCATTACAACTTCGTCAGAT 3128 Query 24686 ATTGATAAAAACAGGCCATTCAGTAACGGCTTAACACCCTCAAGAATGTCTTCGCAGCTT 24745 || | || || || || || | || ||||| ||||| | ||| ||||| ||| | Sbjct 3127 ATACTCAGGAAGAGACCGTTAAGAAGAGGTTTAACCCCCTCCAAAATATCTTCACAGATA 3068 Query 24746 CTGTATTTATATTTGCCGAATGAGTTATATTGATTCTTTGGCGCGTTCAGATTCTCCTGA 24805 | |||||||| || ||||| ||| || || |||||||| ||||| || | |||| Sbjct 3067 CGATATTTATACTTACCGAAAATGTTGTACTGGTTCTTTGGTGCGTTAAGTGTTCGCTGA 3008 Query 24806 ATAGCTGCCAGTCTTGCGTAAAATTCTTTGCTCAT 24840 || |||| || |||||||||||||||| ||||| Sbjct 3007 ATCTCTGCTAGCTTTGCGTAAAATTCTTTACTCAT 2973 >seq79893 Length=11432 Score = 120 bits (132), Expect = 8e-23 Identities = 307/468 (66%), Gaps = 6/468 (1%) Strand=Plus/Plus Query 15072 GAGGTGATTGACGCCAAACTGCGCTACCCGAACACCGCGCTGCTCTACGTCGAATTCGAC 15131 |||||| | ||| ||||||||| |||||||| || || |||||||||||||| || || Sbjct 8753 GAGGTGGTCGACAGCAAACTGCGTTACCCGAATACAGCACTGCTCTACGTCGAGTTTGAT 8812 Query 15132 TCAAGCCAGTTCAACGGCTCTATTCCTCAAATTTCATGCGAACCGCGCGGCCGCGTTATC 15191 | |||||| |||||| | ||| || || | ||| || |||||| || Sbjct 8813 GCCGCCCAGTTTAACGGCAATGCACCTAAAGTTACCTGCAGGCCAAAAGGCCGCAGGATT 8872 Query 15192 CGCGTTCCAGATACCTACGACCCTGAAACCCGCACTTATAGCGGTACATGGACCGGTGCG 15251 || || || | |||| |||| | ||||| |||| ||| | ||| ||| Sbjct 8873 CGGGTGCCGTCGAACTACAACCCCGTCACCCGGGAGTATACCGGCGCGTGGGACGGCAAT 8932 Query 15252 TTTAAGTGGGCATGGACGGATAACCCTGCGTGGATTTTTTACGACCTGGTTGTTTCTGAC 15311 ||| |||||| | | |||||||||| ||||||||||| |||||||| | | | Sbjct 8933 TTTGTGTGGGCGTTCAGTAATAACCCTGCATGGATTTTTTATGACCTGGTGCTGAATAAA 8992 Query 15312 CGGTTCGGCCTTGGGCACCGTTTGACCGCTGCGAATATTGATAAATGGACGCTTTATCAG 15371 ||||| | || ||||| | || | | ||||| || ||| ||| ||| Sbjct 8993 ATTTTCGGAATGGGAAACCGTGTCGATGCCTCCATGATTGACAAGTGGGAGCTATATTCC 9052 Query 15372 GTTGCTCAGTATTGTGATCAGATGGTGCCAGACGGCAAAGGGGGCAACGGTACAGAACCA 15431 | || || || ||| | | ||| | ||||| || |||||| ||||| Sbjct 9053 ATCGCAGCTTACTGCGATGAAAAGGTATCTAACGGCGCTGG------CGGTACTGAACCG 9106 Query 15432 CGTTATACCTGCAACGTGTACATCCAGGATCGGAACGACGCCTACACAGTCCTGCGTGAT 15491 |||| |||||| ||||| || |||||| | | | ||||| || | || ||| ||| Sbjct 9107 CGTTTTACCTGTAACGTTTATATCCAGAGCCAGCAGGACGCGTATAACGTTCTGAAGGAT 9166 Query 15492 TTTGCCGCTATCTTCCGTGGCATGACCTACTGGGGCGGGGATCAGATT 15539 | || || |||||||| || || |||| |||||| |||||||| Sbjct 9167 ATCGCAGCAATCTTCCGGGGAATTACCTTCTGGGGGAATAATCAGATT 9214 >seq123396 Length=12579 Score = 114 bits (126), Expect = 3e-21 Identities = 362/547 (66%), Gaps = 33/547 (6%) Strand=Plus/Minus Query 22049 AAGCTCCTTCATCAGATGCTTATGCTGTGGGGGTCGAGGCTCTCAGAGCTTAGGCTGGCA 22108 ||||| || ||||||||||| |||||||||| | || | ||||| ||| |||| || Sbjct 12578 AAGCTGCTGCATCAGATGCTGCTGCTGTGGGGAGCCAGATTGTCAGAACTTCGGCTCTCA 12519 Query 22109 ACAAAGACAGAATTTGAC-CTGCTGGACAACGTATGGACCGTACCGAAAGAGCATAGCAA 22167 || | || || || ||| | || | ||||||| ||| | ||| || Sbjct 12518 ACCCCTGCTGAGTTCAACACTGAAG-ACTTCATATGGACTACACCTGTCGCCCATTCGAA 12460 Query 22168 GATGGGTAATGTTATCCGCCGTCCAATCTTCGAACAAATTAAGCCTTTTCTCGAAAAG-- 22225 |||||| |||||||||||||| || || || || || || ||||| | | | |||| | Sbjct 12459 GATGGGGAATGTTATCCGCCGCCCTATATTTGAGCAGATGAAGCCATATGTTGAAAGGCT 12400 Query 22226 ----GCCATGACAACATACAATGATGTTCTTTTCCCTGGAGAAGACATAAACAAACCGAT 22281 || |||| ||| | | |||||| || ||| | || | ||||| |||| Sbjct 12399 ACTTGCGATGAAAACCC-CGGTAATGTTC-----CCCGGACAGGAACTGGACAAAGCGAT 12346 Query 22282 CAGCATCGCTGCAGC-CAACCGATTCGTAAATAGAATAA---GGGGAGG--GATGGACAT 22335 | | || | | | ||| || ||| || ||| || | | | | ||| || || Sbjct 12345 CGAC--CGATCCTCCGCAA---ATCTGTACAT-GAAAAACCTGCGCACGAAGATAGATAT 12292 Query 22336 AGGTTACTGGCGAACACATGATTTCAGAAGAACGCTTGTTACACGGCTGTCCGAGATGAA 22395 | ||||| || ||||||||||| | | || ||||| | || || ||| Sbjct 12291 CCCCGAATGGCGCACTCATGATTTCAGGCGCTCACTGGTTACCAACTTATC--AGGCGAA 12234 Query 22396 TGT--CGAGCCCCATGTTACTGAGCGAATGCTCGGTCATGAACTTGGCGGGATAATGTCC 22453 || | |||||| || || || ||||| || ||||| || |||||| ||||| | Sbjct 12233 GGTATCATGCCCCACGTCACCGAAAAGATGCTGGGGCATGAGCTGGGCGGGGTAATGGCG 12174 Query 22454 GTGTACAATAAACACGACTGGATAGAGGCTCAGCGCAAAGCGTATGAGCTTCACGCTGAT 22513 || || || ||||| |||||| | |||| ||||||||||| ||||||||| |||||||| Sbjct 12173 GTTTATAACAAACATGACTGGCTTGAGGAGCAGCGCAAAGCCTATGAGCTTTACGCTGAT 12114 Query 22514 AAATTGTTCTGGCACATCAGGAACATTTCTGGTTAACGCCACCGTTAAGAATCCACCCTT 22573 ||| | | |||||| | | |||| || |||| || || || | | | |||| || Sbjct 12113 AAAGTCCTGTGGCACGTTA--AACAGCTC-GGTTGACACCGCCATCATCTACCCACTTTT 12057 Query 22574 CAACAGC 22580 |||||| Sbjct 12056 TAACAGC 12050 >seq37562 Length=17931 Score = 114 bits (126), Expect = 3e-21 Identities = 393/600 (66%), Gaps = 31/600 (5%) Strand=Plus/Plus Query 21995 GAACTGGCTAAGATTTGGCTTGCTATTGAAAGAAGCCGTGCGTCTACGTCAAATAAGCTC 22054 || ||||| ||| | ||||| || | |||| | | | || | | || || ||||| Sbjct 2014 GAGCTGGCGAAGGTGTGGCTGGCGTTGGAAAACAACAAGGTGTTTTCATCTAACAAGCTG 2073 Query 22055 CTTCATCAGATGCTTATGCTGTGGGGGTCGAGGCTCTCAGAGCTTAGGCTGGCAACAAAG 22114 || ||||||||||| |||||||||| | || | ||||| ||| |||| |||| Sbjct 2074 CTGCATCAGATGCTGCTGCTGTGGGGAGCCAGATTGTCAGAACTTCGGCTCTCAACTCCT 2133 Query 22115 ACAGAATTTGAC-CTGCTGGACAACGTATGGACCGTACCGAAAGAGCATAGCAAGATGGG 22173 | || || || ||| | || | ||||||| ||| | ||| |||||||| Sbjct 2134 GCTGAGTTCAACACTGAAG-ACTTCATATGGACTACACCTGTCGCCCATTCGAAGATGGG 2192 Query 22174 TAATGTTATCCGCCGTCCAATCTTCGAACAAATTAAGCCTTTTCTCGAAAAG------GC 22227 ||||| |||||||| || || || || || || ||||| | | | |||| | || Sbjct 2193 GAATGTGATCCGCCGCCCTATATTTGAGCAGATGAAGCCATATGTTGAAAGGCTGCTTGC 2252 Query 22228 CATGACAACATACAATGATGTTCTTTTCCCTGGAGAAGACATAAACAAACCGATCAGCAT 22287 |||| ||| | | |||||| || ||| | || | ||||| ||||| | Sbjct 2253 GATGAAAACCC-CGGTAATGTTC-----CCCGGACAGGAACTGGACAAAGCGATCGAC-- 2304 Query 22288 CGCTGCAGC-CAACCGATTCGTAAATAGAATAAGGGGAGGG-----ATGGACATAGGTTA 22341 || | | | ||| || ||| || ||| || | | | || || || | | Sbjct 2305 CGGTCCTCCGCAA---ATCTGTACAT-GAAAAACCTGCGCGCGAAAATAGATATCCCTGA 2360 Query 22342 CTGGCGAACACATGATTTCAGAAGAACGCTTGTTACACGGCTGTCCG-AGATGAATGTCG 22400 ||||| || ||||||||||| | | || ||||| | || | ||| | | ||| Sbjct 2361 GTGGCGCACTCATGATTTCAGGCGCTCACTGGTTACGAACTTATCAGGAGAAGG-TATCG 2419 Query 22401 AGCCCCATGTTACTGAGCGAATGCTCGGTCATGAACTTGGCGGGATAATGTCCGTGTACA 22460 |||||| || || || ||||| || ||||| || |||||| ||||| | | || | Sbjct 2420 TGCCCCACGTCACCGAAAATATGCTGGGGCATGAGCTGGGCGGGGTAATGGCGATTTATA 2479 Query 22461 ATAAACACGACTGGATAGAGGCTCAGCGCAAAGCGTATGAGCTTCACGCTGATAAATTGT 22520 | ||||| |||||| | || | ||||||||||| ||||||||| ||||||||||| | Sbjct 2480 ACAAACATGACTGGCTTGATGAGCAGCGCAAAGCCTATGAGCTTTACGCTGATAAAGTCC 2539 Query 22521 TCTGGCACATCAGGAACATTTCTGGTTAACGCCACCGTTAAGAATCCACCCTTCAACAGC 22580 | |||||| | | |||| || |||| || || || | | | |||| || |||||| Sbjct 2540 TGTGGCACGTTA--AACAGCTC-GGTTGACACCGCCATCATCTACCCACTTTTGAACAGC 2596 >seq75855 Length=31220 Score = 100 bits (110), Expect = 7e-17 Identities = 335/513 (65%), Gaps = 19/513 (4%) Strand=Plus/Plus Query 15066 TTCACCGAGGTGATTGACGCCAAACTGCGCTACCCGAACACCGCGCTGCTCTACGTCGAA 15125 ||| | ||||| || ||| ||||||||| || || || || || || || || |||||| Sbjct 12487 TTCGCTGAGGTTATCGACAGCAAACTGCGTTATCCAAATACTGCTCTACTTTATGTCGAA 12546 Query 15126 TTCGACTCAAGCCAGTTCAACGGCTCTATTCCTCAAATTTCATGCGAACCGCGCGGCCGC 15185 | || || || || || ||| || | || ||||| | ||| ||| Sbjct 12547 GTGGATGCATCGCAATTTAATGGCCAGGCACCAAAGATCACATGCAAGCCGAAAGGCAAG 12606 Query 15186 GTTATCCGCGTTCCAGATACCTACGACCCTGAAACCCGCACTTATAGCGGTACATGGACC 15245 | | |||||||| | ||||| |||| | | | ||||| ||||| || ||| Sbjct 12607 CTGGTACGCGTTCCGACGAATTACGAACCTGTTAGCAGGACTTACAGCGGAACCTGGCTG 12666 Query 15246 GGTGCGTTTAAGTGGGCATGGACGGATAACCCTGCGTGGATTTTTTACGACCTGGT--TG 15303 || | || || | || | || |||| || || |||||||||||||| ||||| || Sbjct 12667 GGCGACTTCAAATACGCTTACACCAATAATCCGGCATGGATTTTTTACGATCTGGTGCTG 12726 Query 15304 TTTCTGACCGGTTCGGCCTTGGGCAC-CGT-TTGACCGCTGCGAATATTGATAAATGGAC 15361 | | | || | ||||||| || |||| || | | ||||| | ||| Sbjct 12727 GATAAAATCTGT---GGTATGGGCACGCGCGTTGATGCCTCC-ATGATTGACAGGTGGGA 12782 Query 15362 GCTTTA-TCAGGTTGCTCAGTATTGTGATCAGATGGTGCCAGACGGCAAAGGGGGCAACG 15420 ||| || ||| | || ||||| || ||||| ||||||||| ||||| || |||| Sbjct 12783 GCTGTACTCAA-TCGCGCAGTACTGCGATCAAATGGTGCCAAACGGCGCTGGCGGCA--- 12838 Query 15421 GTACAGAACCACGTTATACCTGCAACGTGTACATCCAGGATCGGAACGACGCCTACACAG 15480 | || || || | |||||||||||||| |||||| | | | || ||||| |||| Sbjct 12839 ---CTGAGCCGCGCTTTACCTGCAACGTGTTTATCCAGAGCCAGCAGGATGCCTATACAG 12895 Query 15481 TCCTGCGTGATTTTGCCGCTATCTTCCGTGGCATGACCTACTGGGGCGGGGATCAGATTG 15540 ||||| || |||| || || ||||| || || || | |||||| ||||||| Sbjct 12896 TCCTGAAGGACATTGCGGCGATATTCCGAGGAATCACGTTCTGGGGTAACAGTCAGATTT 12955 Query 15541 TGGCCCTGGCTGACATGCCGCGCGATGTTGATT 15573 | | |||||| |||||| | ||||||| Sbjct 12956 TTGTGAACGCTGACGTGCCGC---AGGTTGATT 12985 >seq153530 Length=10618 Score = 89.7 bits (98), Expect = 1e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 32086 ATTGCTCACATCTCAGGAAGCCTGAAGGCGATGGCGAAAGACCTGAAAACGCCTGTTATC 32145 |||||| | |||||| || |||| || |||||||||| ||||| || || || Sbjct 9319 ATTGCTGAGATCTCACGATCTTTGAAAGCCTTGGCGAAAGAACTGAATGTACCAGTGGTC 9260 Query 32146 TCCCTGAGTCAGCTTTCACGCGATGTTGAGAAGCGACCAAACAAACGCCCGACAAACGCA 32205 || | |||||| ||| | ||| |||| || | ||||| || ||| || Sbjct 9259 GCCTTATCACAGCTTAACCGCTCATTGGAGCAGCGCGCAGATAAACGGCCAGTCAACTCA 9200 Query 32206 GATTTGCGTGATTCAGGAAGCATTGAACAGGACGCAGACTCAATCATCATGCTCTATCGG 32265 ||||||||||| |||||| ||||| ||||| || |||| ||||| | ||||||| Sbjct 9199 GATTTGCGTGAGTCAGGATCGATTGAGCAGGATGCCGACTTGATCATGTTTATCTATCGT 9140 Query 32266 GAAGCGGTATATGACGAGAACAGT 32289 || | ||| ||| |||| |||||| Sbjct 9139 GACGAGGTGTATCACGAAAACAGT 9116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127613364543434