Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_019768.1 Length=41468 Score E Sequences producing significant alignments: (Bits) Value seq196645 194 4e-45 seq201909 127 5e-25 seq79893 123 7e-24 seq235341 82.4 2e-11 >seq196645 Length=3446 Score = 194 bits (214), Expect = 4e-45 Identities = 281/395 (71%), Gaps = 4/395 (1%) Strand=Plus/Minus Query 26834 CTGATGTTTATGCTCGTCTGTATCTGCATCTTTCGCATCATCTATGCCGAACAAACCATT 26893 ||| || | | |||| ||||| || ||||| || | ||||| || | |||| | |||| Sbjct 3365 CTGGTGATGAAGCTCATCTGTGTCAGCATCCTTTGAGTCATCAATATCAAACAGAACATT 3306 Query 26894 GAGGCAATACTTGCGTGCATAAGAGCTTGTAGCTCCAGTAACTTGTGCAGAATCCATTCC 26953 || |||||||| | |||||| || || || || |||||||| || || || |||||||| Sbjct 3305 AAGACAATACTTCCTTGCATACGAACTAGTTGCCCCAGTAACCTGAGCCGAGTCCATTCC 3246 Query 26954 TTTCTTGCTTTCTTCCTCTCGTGCAAGAGCGGTTGCCGTATGACTGTT--TTCGCCATCG 27011 |||||||| || || || | ||| | || | |||||||| |||| ||| || || Sbjct 3245 CTTCTTGCTCTCCTCTTCCCTTGCCAAGGCACTCGCCGTATG--TGTTGATTCACCGTCT 3188 Query 27012 GTAATAGTTGCCGTGGCTTTCACGTAATACCGATCACCAATCAACACAACTTCATCGCTG 27071 ||||| ||||| || | || || || ||| || |||| |||||||| || Sbjct 3187 GTAATCGTTGCTACAGCCCTGACATAGTAACGACTCCCTATCATTACAACTTCGTCAGAT 3128 Query 27072 ATTGATAAAAACAGGCCATTCAGTAACGGCTTAACGCCTTCAAGAATGTCTTCGCAGCTT 27131 || | || || || || || | || ||||| || || | ||| ||||| ||| | Sbjct 3127 ATACTCAGGAAGAGACCGTTAAGAAGAGGTTTAACCCCCTCCAAAATATCTTCACAGATA 3068 Query 27132 CTGTATTTATATTTGCCGAATGAGTTGTACTGATTCTTTGGCGCGTTCAGATTCTCCTGA 27191 | |||||||| || ||||| ||||||||| |||||||| ||||| || | |||| Sbjct 3067 CGATATTTATACTTACCGAAAATGTTGTACTGGTTCTTTGGTGCGTTAAGTGTTCGCTGA 3008 Query 27192 ATAGCTGCCAGTCTTGCGTAAAATTCTTTGCTCAT 27226 || |||| || |||||||||||||||| ||||| Sbjct 3007 ATCTCTGCTAGCTTTGCGTAAAATTCTTTACTCAT 2973 >seq201909 Length=21394 Score = 127 bits (140), Expect = 5e-25 Identities = 126/153 (82%), Gaps = 15/153 (10%) Strand=Plus/Minus Query 39613 GGGCTTTTTTATGTCCGCAGTAAAC----GCGCATCTCACGCGCATATTAA-CGAGAGCC 39667 ||||||||||||| |||||| | ||||||| || |||||||| || | ||| | Sbjct 3787 GGGCTTTTTTATG----CAGTAAGCCCCCGCGCATCGCA-GCGCATATCAATCCCGAGTC 3733 Query 39668 TTTCAGTAAGC-GAGCCTGAGAAATGCCGTTATAGGTGGCGACCTCTCTCGGGCGGCTTT 39726 |||||| |||| |||||||||||| ||||| ||||||| |||||||| |||||||||| Sbjct 3732 TTTCAGAAAGCTGAGCCTGAGAAAAGCCGT-ATAGGTGCGGACCTCTCG-GGGCGGCTTT 3675 Query 39727 TCTGTGAG-ACAGGCTCA-CTTTCTAAAAGGTA 39757 |||||| | ||||||||| |||||||||||||| Sbjct 3674 TCTGTGCGAACAGGCTCATCTTTCTAAAAGGTA 3642 >seq79893 Length=11432 Score = 123 bits (136), Expect = 7e-24 Identities = 308/468 (66%), Gaps = 6/468 (1%) Strand=Plus/Plus Query 15081 GAGGTGATTGACGCCAAACTGCGCTACCCGAACACCGCGCTGCTCTACGTCGAATTCGAC 15140 |||||| | ||| ||||||||| |||||||| || || |||||||||||||| || || Sbjct 8753 GAGGTGGTCGACAGCAAACTGCGTTACCCGAATACAGCACTGCTCTACGTCGAGTTTGAT 8812 Query 15141 TCAAGCCAGTTCAACGGCTCTATTCCTCAAATTTCATGCGAACCGCGCGGCCGCGTTATC 15200 | |||||| |||||| | ||| || || | ||| || |||||| || Sbjct 8813 GCCGCCCAGTTTAACGGCAATGCACCTAAAGTTACCTGCAGGCCAAAAGGCCGCAGGATT 8872 Query 15201 CGCGTTCCAGATACCTACGACCCTGAAACCCGCACTTATAGCGGTACATGGACCGGTGCG 15260 || || || | |||| |||| | ||||| |||| ||| | ||| ||| Sbjct 8873 CGGGTGCCGTCGAACTACAACCCCGTCACCCGGGAGTATACCGGCGCGTGGGACGGCAAT 8932 Query 15261 TTTAAGTGGGCATGGACGGATAACCCTGCGTGGATTTTTTACGACCTGGTTGTTTCTGAC 15320 ||| |||||| | | |||||||||| ||||||||||| |||||||| | | | Sbjct 8933 TTTGTGTGGGCGTTCAGTAATAACCCTGCATGGATTTTTTATGACCTGGTGCTGAATAAA 8992 Query 15321 CGGTTCGGCCTTGGGCACCGTTTGACCGCTGCGAATATTGATAAATGGACGCTTTATCAG 15380 ||||| | || ||||| | || | | ||||| || ||| ||| ||| Sbjct 8993 ATTTTCGGAATGGGAAACCGTGTCGATGCCTCCATGATTGACAAGTGGGAGCTATATTCC 9052 Query 15381 GTTGCTCAGTATTGTGATCAGATGGTACCAGACGGCAAAGGGGGCAACGGTACAGAACCA 15440 | || || || ||| | | |||| | ||||| || |||||| ||||| Sbjct 9053 ATCGCAGCTTACTGCGATGAAAAGGTATCTAACGGCGCTGG------CGGTACTGAACCG 9106 Query 15441 CGTTATACCTGCAACGTGTACATTCAGGACCGGAACGACGCCTACACAGTCCTGCGTGAT 15500 |||| |||||| ||||| || || ||| || | | ||||| || | || ||| ||| Sbjct 9107 CGTTTTACCTGTAACGTTTATATCCAGAGCCAGCAGGACGCGTATAACGTTCTGAAGGAT 9166 Query 15501 TTTGCCGCTATCTTCCGTGGCATGACCTACTGGGGCGGGGATCAGATT 15548 | || || |||||||| || || |||| |||||| |||||||| Sbjct 9167 ATCGCAGCAATCTTCCGGGGAATTACCTTCTGGGGGAATAATCAGATT 9214 >seq235341 Length=2087 Score = 82.4 bits (90), Expect = 2e-11 Identities = 119/167 (71%), Gaps = 1/167 (1%) Strand=Plus/Minus Query 30830 GCTATGCAGAAATCACCTGGCTCAACAGCCTGCTCAGGGTCAACCAGAATTAACATCCCG 30889 |||| |||||||||||| ||||| | ||| || || ||||| |||| ||| || Sbjct 660 GCTACGCAGAAATCACCGCTTTCAACTGGAACCTCTGGATCTACCAGTATTAGCATTCCC 601 Query 30890 TCAGGAAAACTAGGTTTGGATCCTGTTGGCGCGGTCATGGAATTACCTTCAACCTCAAGC 30949 || || ||||| ||| || |||| || || ||||| || | |||| |||||||||| Sbjct 600 TCTGGGAAACTTGGTCTGCTTCCTTGAGGTGCCGTCATCGAGTGACCTGAAACCTCAAGC 541 Query 30950 CAGAATGCAGAATCACTGGCTTTTTTGGTTG-TGCTTACCCATCTCT 30995 || |||| | | |||||| ||||||| ||| || |||||| Sbjct 540 CAAAATGAATTCTTTGAGGCTTTCTTGGTTGAGGCTATCCAATCTCT 494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 131790056410860