Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_019929.1 Length=243050 Score E Sequences producing significant alignments: (Bits) Value seq63939 208 1e-48 seq494847 161 2e-34 seq105800 149 1e-30 seq2677 132 7e-26 seq253137 86.0 1e-11 seq202371 86.0 1e-11 seq178804 86.0 1e-11 seq109994 86.0 1e-11 seq367800 84.2 3e-11 >seq63939 Length=2243 Score = 208 bits (230), Expect = 1e-48 Identities = 226/297 (76%), Gaps = 2/297 (1%) Strand=Plus/Plus Query 122363 ATGAAACAATATCTGGACTTACTGCGTGACGTTCGTGACAACGGGCACGA-AAAAGCAGA 122421 |||||||| |||||||| ||| ||| | || | || | || |||| |||||| || Sbjct 1900 ATGAAACAGTATCTGGATTTAATGCAACATGTGCTGCACGAAGG-CACGCCAAAAGCTGA 1958 Query 122422 CCGTACGGGCACGGGCACCCTGTCGTTATTCGGCGCACAAATGCGCTTTGACCTGCAAAA 122481 |||||| ||||| || || || || | || || || ||||| || ||||||| | Sbjct 1959 CCGTACCGGCACCGGTACGCTTTCAATTTTTGGTCACCAGATGCGTTTCAACCTGCAGGA 2018 Query 122482 AGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCCATCATCCATGAGCTTCT 122541 ||||| ||||||||||| ||||| || ||| ||||||| || || |||||||| || Sbjct 2019 TGGTTTTCCGCTGGTCACCACCAAGAAATGTCATATCCGCTCGATTATTCATGAGCTGCT 2078 Query 122542 GTGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATCTG 122601 |||||| || | ||||||||||||||| ||||| ||||| ||||||||| ||||| Sbjct 2079 GTGGTTTCTGAAAGGCGATACCAACATCGGTTATCTCAAAGAAAACAACGTCTCCATCTG 2138 Query 122602 GGATGAATGGGCAGATGAAGATGGTAATCTCGGCCCGGTGTACGGTAAGCAATGGCG 122658 |||||| ||||| ||||| |||| |||||||||||||||| || || || ||||| Sbjct 2139 GGATGAGTGGGCGGATGAGAATGGCGATCTCGGCCCGGTGTATGGCAAACAGTGGCG 2195 >seq494847 Length=1062 Score = 161 bits (178), Expect = 2e-34 Identities = 217/299 (73%), Gaps = 6/299 (2%) Strand=Plus/Minus Query 122363 ATGAAACAATATCTGGACTTACTGCGTGACGTTCGTGACAACGGGCACG---AAAAAGCA 122419 |||||||| ||||||| ||| ||| |||| | || | ||||||| ||||| Sbjct 763 ATGAAACAGTATCTGGCGTTAATGCAGCACGTGCTCGAGCA-GGGCACGCCCAAAAAT-- 707 Query 122420 GACCGTACGGGCACGGGCACCCTGTCGTTATTCGGCGCACAAATGCGCTTTGACCTGCAA 122479 ||||| || || || ||||| |||||| | || || || ||||| || | ||||| Sbjct 706 GACCGCACCGGAACCGGCACGCTGTCGATTTTTGGTCATCAGATGCGTTTCAATCTGCAG 647 Query 122480 AAAGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCCATCATCCATGAGCTT 122539 | ||||| ||||||||||| ||||| ||| || | ||||| ||||| |||||||| Sbjct 646 GACGGTTTTCCGCTGGTCACCACCAAGAAGTGCCATTTGCGCTCTATCATTCATGAGCTG 587 Query 122540 CTGTGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATC 122599 ||||||||||| | || || || |||||| || ||||| || || || || ||| Sbjct 586 CTGTGGTTCCTTAACGGTGACACTAACATCGCCTACCTGAAGGAAAATAAGGTGTCGATC 527 Query 122600 TGGGATGAATGGGCAGATGAAGATGGTAATCTCGGCCCGGTGTACGGTAAGCAATGGCG 122658 ||||| || ||||| |||||| | ||| | ||||| ||||| || || || || ||||| Sbjct 526 TGGGACGAGTGGGCCGATGAAAAGGGTGACCTCGGGCCGGTTTATGGCAAACAGTGGCG 468 Score = 132 bits (146), Expect = 7e-26 Identities = 191/267 (72%), Gaps = 2/267 (1%) Strand=Plus/Minus Query 123074 TCCTGTCAGCTGTATCAGCGCAG-TGCTGACATGTTCCTAGGCGTACCGTTTAACATTGC 123132 ||||| || |||||||||||| ||| || || ||||| ||| | ||||| || || || Sbjct 286 TCCTGCCAACTGTATCAGCGCTCCTGC-GATATCTTCCTCGGCCTGCCGTTCAATATCGC 228 Query 123133 CTCTTACGCGCTCCTGATACACATGTTTGCCCAGCAGGCCAATATGGCAGTAGGTGACTT 123192 | ||||| | ||| | || ||| | ||||||||| | | ||| ||| ||||| || Sbjct 227 CAGCTACGCTTTGCTGGTGCATATGATGGCCCAGCAGTGCGACCTGGAAGTGGGTGATTT 168 Query 123193 CGTGTGGACGGGTGGGGATGTGCATCTGTACTCCAACCACCTGGAGCAGGCAGATTTGCA 123252 || ||||| ||||| ||| ||||||||| |||||||||||||||| | |||| Sbjct 167 TGTCTGGACCGGTGGCGATACCCATCTGTACAGCAACCACCTGGAGCAGACGCGCCTGCA 108 Query 123253 GTTAACTCGCGAACCTCATCCGTTACCACAACTGCGGATTAAACGTCGTCCGGATTCTAT 123312 | | || |||||||| | | | || | ||| || || || ||||| ||||| Sbjct 107 GCTGACGCGCGAACCGCGCGCCCTGCCGAAGCTGATTATCAAGCGCAAGCCGGAGTCTAT 48 Query 123313 CTTCGACTATAAGTTTGAAGATTTCGA 123339 |||||||||| ||||| || ||||| Sbjct 47 CTTCGACTATCGCTTTGATGACTTCGA 21 Score = 122 bits (134), Expect = 1e-22 Identities = 108/135 (80%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 122789 ATCGACCAAATCAGCAAGGTCATGGAACAACTGAAAAACGACCCGGACAACCGCCGTATC 122848 |||||||| | |||||||| | ||||| ||||||| |||||||||| ||||| ||| Sbjct 439 ATCGACCAGCTGAGCAAGGTGGTCGAACAGCTGAAAAGCGACCCGGACTCGCGCCGCATC 380 Query 122849 ATCGTCAGTGCCTGGAACGTGGCTGACCTGGATGAAATGGCGTTAGCACCATGCCATGCC 122908 ||||| ||| |||||||| | || |||||||| |||||| | || || ||||| || Sbjct 379 ATCGTTTCTGCATGGAACGTCGGCGAACTGGATGAGATGGCGCTGGCCCCGTGCCACGCG 320 Query 122909 TTCTTCCAGTTCTAC 122923 ||||||||||||||| Sbjct 319 TTCTTCCAGTTCTAC 305 >seq105800 Length=3879 Score = 149 bits (164), Expect = 1e-30 Identities = 215/298 (72%), Gaps = 4/298 (1%) Strand=Plus/Plus Query 122363 ATGAAACAATATCTGGACTTACTGCGTGACGTTCGTGACAACGGGCACGAAAAAG-CAGA 122421 ||||| ||||||||||| || || | | || || ||| ||| ||||| |||| Sbjct 2606 ATGAAGCAATATCTGGATCTATTGGATCATGTATACCGCACCGG-CACTGAAAAGACAGA 2664 Query 122422 CCGTACGGGCACGGGCACCCTGTCGT-TATTCGGCGCACAAATGCGCTTTGACCTGCAAA 122480 ||||||||||| ||||| | | || |||| ||| |||||||| ||||| ||| || Sbjct 2665 TCGTACGGGCACAGGCACGC-GCAGTGTATTTGGCTATCAAATGCGTTTTGATCTGAAAG 2723 Query 122481 AAGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCCATCATCCATGAGCTTC 122540 || || ||| ||||||| ||||||||| | || | || ||||| |||||||| || Sbjct 2724 CTGGCTTTCCGTTGGTCACCACCAAAAAGTTACATATGCGATCCATTATCCATGAACTAA 2783 Query 122541 TGTGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATCT 122600 | |||||| | | || || || |||||| ||| ||||||| || || || || | Sbjct 2784 TCTGGTTCTTAAAAGGTGAGACGAACATCAGCTATTTGAAAGAAAATGGTGTTAGCATTT 2843 Query 122601 GGGATGAATGGGCAGATGAAGATGGTAATCTCGGCCCGGTGTACGGTAAGCAATGGCG 122658 ||||||||||||| |||||| | || ||| | || ||||| || || |||||||| Sbjct 2844 GGGATGAATGGGCTGATGAAAACGGGAATTTAGGTCCGGTTTATGGCTCACAATGGCG 2901 >seq2677 Length=2322 Score = 132 bits (146), Expect = 7e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 122420 GACCGTACGGGCACGGGCACCCTGTCGTTATTCGGCGCACAAATGCGCTTTGACCTGCAA 122479 |||||||| || || |||||| | || | ||||| ||||||||||| || |||||| Sbjct 2094 GACCGTACCGGTACCGGCACCTTATCCATTTTCGGTCACCAAATGCGCTTCGATCTGCAA 2153 Query 122480 AAAGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCCATCATCCATGAGCTT 122539 | || ||||| | ||||| || ||||| || || ||||| || || || ||||| Sbjct 2154 CAGGGCTTCCCCTTAGTCACCACGAAAAAATGCCATCTGCGCTCGATTATTCACGAGCTG 2213 Query 122540 CTGTGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATC 122599 |||||||| | | ||| || ||||| ||| || || ||||| ||||| || | || Sbjct 2214 CTGTGGTTTTTAAAGGGAGACACCAATATCGCTTACCTAAAAGAGAACAAGGTAACGATT 2273 Query 122600 TGGGATGAATGGGCAGATGAAGATGGTAATCTCGGCCCGGTGTACGGT 122647 ||||||||||||||||| || | || || | || ||||| || ||| Sbjct 2274 TGGGATGAATGGGCAGACGAGCAGGGCAACTTAGGTCCGGTTTATGGT 2321 >seq253137 Length=41313 Score = 86.0 bits (94), Expect = 1e-11 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 169728 GGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAG 169787 ||||||||| ||| |||||| |||| ||||||||||| |||||| | ||||||||||| Sbjct 15686 GGATTGTAGTTCAATTGGTC-AGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTCGAG 15628 Query 169788 CCCCGTCAGTCC 169799 |||||||||||| Sbjct 15627 CCCCGTCAGTCC 15616 >seq202371 Length=133372 Score = 86.0 bits (94), Expect = 1e-11 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 169728 GGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAG 169787 ||||||||| ||| |||||| |||| ||||||||||| |||||| | ||||||||||| Sbjct 252 GGATTGTAGTTCAATTGGTC-AGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTCGAG 310 Query 169788 CCCCGTCAGTCC 169799 |||||||||||| Sbjct 311 CCCCGTCAGTCC 322 >seq178804 Length=65803 Score = 86.0 bits (94), Expect = 1e-11 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 169728 GGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAG 169787 ||||||||| ||| |||||| |||| ||||||||||| |||||| | ||||||||||| Sbjct 36130 GGATTGTAGTTCAATTGGTC-AGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTCGAG 36188 Query 169788 CCCCGTCAGTCC 169799 |||||||||||| Sbjct 36189 CCCCGTCAGTCC 36200 >seq109994 Length=47058 Score = 86.0 bits (94), Expect = 1e-11 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 169728 GGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAG 169787 ||||||||| ||| |||||| |||| ||||||||||| |||||| | ||||||||||| Sbjct 30214 GGATTGTAGTTCAATTGGTC-AGAGCCCCGCCCTGTCAAGGCGGAAGCTGCGGGTTCGAG 30156 Query 169788 CCCCGTCAGTCC 169799 |||||||||||| Sbjct 30155 CCCCGTCAGTCC 30144 >seq367800 Length=224 Score = 84.2 bits (92), Expect = 3e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 122459 CAAATGCGCTTTGACCTGCAAAAAGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTC 122518 || |||||||| || ||| | |||||||| | ||||| ||||| ||| | ||||| Sbjct 126 CAGATGCGCTTCGATCTGGCGCAGGGTTTCCCCATCGTCACCACCAAGAAGCTGCACCTG 185 Query 122519 CGCTCCATCATCCATGAGCTTCTGTGGTTCCTCATGGGC 122557 ||||| |||||||| ||||| ||||||||||| | |||| Sbjct 186 CGCTCGATCATCCACGAGCTGCTGTGGTTCCTGAAGGGC 224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 772779372191600