Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_020083.1 Length=157834 Score E Sequences producing significant alignments: (Bits) Value seq302683 111 2e-19 seq286911 111 2e-19 seq189010 87.8 2e-12 seq1462 87.8 2e-12 seq462907 86.0 6e-12 >seq302683 Length=202 Score = 111 bits (122), Expect = 2e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 76982 AACTCACCTAACCATTGGGACGGTGAAGAGACTGGCAACCGCCATTACTTCTTCATGCTG 77041 ||||| || |||||||||||||| |||| |||||||||| |||||||||||||||||| Sbjct 1 AACTCTCCGAACCATTGGGACGGGGAAGCGACTGGCAACAAGCATTACTTCTTCATGCTG 60 Query 77042 AAGGGTTGCCAGAACCCGTCGTCGACTCGCGGCTTCTACAATGAGTACCTGAAGTCTGAA 77101 | ||| | | ||| || |||||||| |||||||| ||||||||| |||| Sbjct 61 GACGGTGCTGTGCAGCCGGGTTCTACTCGCGGTTTCTACAACGAGTACCTGCGTAATGAA 120 Query 77102 CTGAACGAGCATCGCAAGGTGCTGGAGATCCTGGGTAGCAAACTGCGGGTT-GAGCATTC 77160 ||| ||||| ||||| ||| | || |||| | |||| || ||| |||| || Sbjct 121 CTGGTTGAGCACCGCAAAGTGTTCGAACATCTGGCTGGCAAGATGAAAGTTCCAGCA-TC 179 Query 77161 GCCTGAGCAGGTGAGCGG 77178 | ||||| ||||||| Sbjct 180 AACGGAGCAACTGAGCGG 197 >seq286911 Length=6367 Score = 111 bits (122), Expect = 2e-19 Identities = 70/76 (92%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19326 ATTTGGTAGTCCCTGTTGGCTTTGAACCAACGACCAAGCGATTATGAGTCGCATGCTCTA 19385 ||||||| | ||||| ||| ||||||||| |||||||||||||||||||||| ||||||| Sbjct 5712 ATTTGGTGGCCCCTGCTGGGTTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTA 5771 Query 19386 ACCACTGAGCTAAGGG 19401 |||||||||||||||| Sbjct 5772 ACCACTGAGCTAAGGG 5787 >seq189010 Length=996 Score = 87.8 bits (96), Expect = 2e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 19336 CCCTGTTGGCTTTGAACCAACGACCAAGCGATTATGAGTCGCATGCTCTAACCACTGAGC 19395 || || ||| ||||||||| |||||||||||||||||||||| |||||| |||||||||| Sbjct 781 CCTTGCTGGATTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTGACCACTGAGC 840 Query 19396 TAAGGG 19401 ||| || Sbjct 841 TAAAGG 846 >seq1462 Length=4781 Score = 87.8 bits (96), Expect = 2e-12 Identities = 268/405 (66%), Gaps = 12/405 (3%) Strand=Plus/Plus Query 106060 CCGACCCCGATCATGGCTGGCGTCCGTACCCGTACCCGTCAGTTCAGCTCCTGTGTGCTG 106119 || || || ||||||||||| || || || | || || || |||||||| || ||||| Sbjct 1039 CCTACGCCAATCATGGCTGGGGTACGGACGCCGACTCGCCAATTCAGCTCATGCGTGCTT 1098 Query 106120 ATCAAAGTCGGCGACACGCTGGACTCTATCAAGGCCGCAGGCTCTGCTATCGTTGACTA- 106178 ||| | ||||| | | ||||||||||| ||| | |||||||||| | || Sbjct 1099 ATCGAGTGTGGCGATAGCTTAGACTCTATCAACGCCACTTCTAGTGCTATCGTTAAATAC 1158 Query 106179 -TGTCAGCAAGCGCGCAGGCATCGGTCTGGACGTGGGGGAGATTCGTGCCCTCGGTGCTC 106237 | ||| ||| |||||||| |||||| | | | || |||||||| || || | Sbjct 1159 GTTTCA-CAA-CGCGCAGGGATCGGTATCAATGCTGGCCGTATTCGTGCGCTAGGCAGCC 1216 Query 106238 CTATCCGTGGCGGTGAGATGGAGCATACCGGAACTATCCCATTCATCAAGAAGTTC--GT 106295 | |||||||| ||||| |||||||| |||||| ||| ||| | ||| | Sbjct 1217 CAATCCGTGGTGGTGAAGCTTTCCATACCGGTTGTATCCCGTTCTACAAACACTTCCAGA 1276 Query 106296 CGGTGACCTGAAGAGCTGCTCTCAGGGTGGGGTTCGCGGCGGCTCTATGACTGCCTACTA 106355 || | | |||| ||||| || || || || ||||| || | ||| | || Sbjct 1277 CG--GCCGTGAAATCTTGCTCGCAAGGCGGCGTACGCGGGGGTGCCGCGACACTGTTTTA 1334 Query 106356 TCCGATGTGGCACCT-GCAGTTCCCAGCCATGATT-GTTCTGAAGAATAACCGTGGCACT 106413 || ||||||||| | | | || ||| | ||| || ||||| ||||||||||| | Sbjct 1335 CCCTATGTGGCACTTGGAAATTGAAAGC--TTATTAGTCCTGAAAAATAACCGTGGTGTT 1392 Query 106414 GAGAACAACCGCGAACGCCGCACTGATTATGGTGTGCAGATCAAC 106458 || ||||| | || | | ||||| || || || |||||| Sbjct 1393 GAAGGTAACCGTGTCCGTCACCTAGATTACGGCGTACAAATCAAC 1437 >seq462907 Length=336 Score = 86.0 bits (94), Expect = 6e-12 Identities = 66/77 (86%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 19326 ATTTGGTAGTCCCTGTTGGCTTTGAACCAACGACCAAGCGATTATGAGTCGCATGCTCTA 19385 || |||| | ||| | ||| |||||||| |||||||||||||||||||||| ||||||| Sbjct 19 ATCTGGTGGCCCCAGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCGTGCTCTA 78 Query 19386 ACC-ACTGAGCTAAGGG 19401 ||| ||||||||| ||| Sbjct 79 ACCAACTGAGCTATGGG 95 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 501789836861040