Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_020416.1 Length=160221 Score E Sequences producing significant alignments: (Bits) Value seq65234 192 6e-44 seq1462 149 6e-31 seq260686 132 5e-26 >seq65234 Length=1614 Score = 192 bits (212), Expect = 6e-44 Identities = 322/466 (69%), Gaps = 0/466 (0%) Strand=Plus/Plus Query 133783 CATCAAATCATTGATTTGCAGACCGTAATCTAGATGACGAATGCGGTTTTCATCTACACC 133842 ||| || | ||| ||||| | | | ||||| |||||||| | | ||||| || | || Sbjct 649 CATTAATTTATTAATTTGTACAGCATAATCAAGATGACGTACTCTATTTTCTTCAATTCC 708 Query 133843 TTTGTTGTTCTTTAATACCAACAGGTTTTCAACCTCAAGATGCCACATTGGATAATAAAG 133902 | | || || ||||| || || | ||||||| || |||||||| ||||| ||| ||| Sbjct 709 TCTATTATTTTTTAAAACTAATAAATTTTCAATTTCTAGATGCCATATTGGGTAAAAAAC 768 Query 133903 AGTAGCTGCACCACCACGTACACCGCCTTGAGAACAAGATTTTACTGCAGTCTGAAAATG 133962 ||| || || || || | || || ||||||||||||||||||||||| | || || || Sbjct 769 AGTTGCGGCCCCTCCTCTAACTCCACCTTGAGAACAAGATTTTACTGCGCTTTGGAAGTG 828 Query 133963 TTTCCAGAAAGGAATTACGCCAGTATGTTTTACTTCGCCATTACCAATTTTTGAGCCTTC 134022 ||| | |||||||| || ||||| | |||| ||||| | || ||| Sbjct 829 TTTATAAAAAGGAATACATCCGGTATGAAATGCTTCTCCATTTCTGATAGGACTTCCTAA 888 Query 134023 AGCTCGAATCATACCGGCGTTGATGCCGATACCAGCTCGCTTGCTGATATACTTAATAAT 134082 ||||||||| ||| ||||| ||||| || || ||||| | | ||| || | ||| Sbjct 889 AGCTCGAATTTGACCAGCGTTAATGCCTATTCCTGCTCGTTGAGAAACATATTTTACAAT 948 Query 134083 ACTGTTACTTGCCGCATTAATAGAATTCAGTGAATCGCCAGCTTCAATAACTACACAAGA 134142 || ||| ||||||||||| || | ||| || |||||| | |||||||| Sbjct 949 TGCACTAGTTGTAGCATTAATAGAGTTTAAATTATCTGCACATTCAATTAACACACAAGA 1008 Query 134143 ACTAAACTGACGAGTAGGAGTACGAGCCCCTGCCATAATCGGTGTAGGCAATGAAATCTG 134202 |||||| |||||||| || || | | |||| |||||||||||| || | || || | Sbjct 1009 ACTAAATTGACGAGTTGGTGTTCTTACTCCTGACATAATCGGTGTGGGTAGAGATATTTT 1068 Query 134203 GCGAGTAGATACAGCATCATAAAAACGAATAATATGAGCCAGACGA 134248 ||| || | |||| |||||| || ||||| | || |||| Sbjct 1069 AAAAGTGGAAATTGCATTATAAAAGCGCTGAATATAATTCATACGA 1114 >seq1462 Length=4781 Score = 149 bits (164), Expect = 6e-31 Identities = 340/505 (67%), Gaps = 9/505 (2%) Strand=Plus/Minus Query 133732 CACATC---TGGGCTGAACAGTGTGATGTACCCAT-TTTTACCGAGACGTTCCATCATCA 133787 |||||| ||| ||||| || | ||| | || ||||||| ||||||| ||| | Sbjct 1500 CACATCCGATGGACTGAATAGCGAGATATCGCCGCCTTTTACC-AGACGTTGATACATGA 1442 Query 133788 AATCATTGATTTGCAGACCGTAATCTAGATGACGAATGCGGTTTTCATCTACACCTTTGT 133847 | |||||||| | ||||||||||| ||||| | ||||| | || ||||| || Sbjct 1441 GTTTGTTGATTTGTACGCCGTAATCTAGGTGACGGACACGGTTACCTTCAACACCACGGT 1382 Query 133848 TGTTCTTTAATACCAACAGGTTTTCAACCTCAAGATGCCACATTGGATAATAAAGAGTAG 133907 | || || | || || | | |||||| || | |||||||| || ||| | || || | Sbjct 1381 TATTTTTCAGGACTAATAAGCTTTCAATTTCCAAGTGCCACATAGGGTAAAACAGTGTCG 1322 Query 133908 CTGCACCACCACGTACACCGCCTTGAGAACAAGATTTTACTGCAGTCTGAAAATGTTTCC 133967 | ||||| || ||||| |||||||| || |||||||| || || ||||| || ||||| Sbjct 1321 CGGCACCCCCGCGTACGCCGCCTTGCGAGCAAGATTTCACGGCCGTCTGGAAGTGTTTGT 1262 Query 133968 AGAAAGGAATTACGCCAGTATGTTTTACTTCGCCATTACCAATTTTTGAGCCTTCAGCTC 134027 |||| || || || ||||| |||| ||| || ||| |||| || | Sbjct 1261 AGAACGGGATACAACCGGTATGGAAAGCTTCACCACCACGGATTGGGCTGCCTAGCGCAC 1202 Query 134028 GAATCATACCGGCGTTGATGCCGATACCAGCTCGCTTGCTGATA--TACTTAATAATACT 134085 |||| || || ||||| ||||| || || || ||| ||| | || |||| ||| Sbjct 1201 GAATACGGCCAGCATTGATACCGATCCCTGCGCG-TTG-TGAAACGTATTTAACGATAGC 1144 Query 134086 GTTACTTGCCGCATTAATAGAATTCAGTGAATCGCCAGCTTCAATAACTACACAAGAACT 134145 || | || || ||||| | | ||||||| || |||| || || || || Sbjct 1143 ACTAGAAGTGGCGTTGATAGAGTCTAAGCTATCGCCACACTCGATAAGCACGCATGAGCT 1084 Query 134146 AAACTGACGAGTAGGAGTACGAGCCCCTGCCATAATCGGTGTAGGCAATGAAATCTGGCG 134205 || || ||||| || || || |||| ||||| || || ||||| || ||||| | Sbjct 1083 GAATTGGCGAGTCGGCGTCCGTACCCCAGCCATGATTGGCGTAGGTAAGGAAATTTTAAA 1024 Query 134206 AGTAGATACAGCATCATAAAAACGA 134230 || || || ||||||||||| ||| Sbjct 1023 GGTCGACACGGCATCATAAAAGCGA 999 >seq260686 Length=13603 Score = 132 bits (146), Expect = 5e-26 Identities = 288/431 (67%), Gaps = 0/431 (0%) Strand=Plus/Minus Query 133799 TGCAGACCGTAATCTAGATGACGAATGCGGTTTTCATCTACACCTTTGTTGTTCTTTAAT 133858 |||| ||||| || | |||||| | |||||| | || || || ||||||||| | Sbjct 5578 TGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCCGCGGTTGTTCTTCAGC 5519 Query 133859 ACCAACAGGTTTTCAACCTCAAGATGCCACATTGGATAATAAAGAGTAGCTGCACCACCA 133918 |||| |||| |||| || || |||||||||||||| || | || || |||||||| || Sbjct 5518 ACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAGGGTCGCTGCACCGCCG 5459 Query 133919 CGTACACCGCCTTGAGAACAAGATTTTACTGCAGTCTGAAAATGTTTCCAGAAAGGAATT 133978 || || ||||| ||||| || || || || || ||||| || || || |||| ||||| Sbjct 5458 CGCACGCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTGCTTATAGAACGGAATG 5399 Query 133979 ACGCCAGTATGTTTTACTTCGCCATTACCAATTTTTGAGCCTTCAGCTCGAATCATACCG 134038 ||| || || | |||| || | || ||| || || || |||| Sbjct 5398 CAGCCGGTGTGGAATGCTTCACCGCCGCGGATCGGGCTGCCCAGCGCACGGATGCGACCG 5339 Query 134039 GCGTTGATGCCGATACCAGCTCGCTTGCTGATATACTTAATAATACTGTTACTTGCCGCA 134098 ||||| ||||||||||| || |||| | ||||| | ||| | | | || Sbjct 5338 GCGTTAATGCCGATACCGGCACGCTGAGAAACGTACTTCACAATCGCGCTGGAGGTGGCG 5279 Query 134099 TTAATAGAATTCAGTGAATCGCCAGCTTCAATAACTACACAAGAACTAAACTGACGAGTA 134158 ||||| |||| || ||||| ||||| | ||| || || || ||||| || || Sbjct 5278 TTAATGGAATCAAGGCTGTCGCCGCACTCAATCAGTACGCAGGAGCTGAACTGGCGCGTC 5219 Query 134159 GGAGTACGAGCCCCTGCCATAATCGGTGTAGGCAATGAAATCTGGCGAGTAGATACAGCA 134218 || || || | || | |||||| || || |||| ||||||| || || | ||| Sbjct 5218 GGGGTGCGCACGCCGGACATAATTGGCGTCGGCAGCGAAATCTTAAAGGTGGAGATCGCA 5159 Query 134219 TCATAAAAACG 134229 || || ||||| Sbjct 5158 TCGTAGAAACG 5148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 509380571239960