Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq121512 111 2e-19 seq170665 100 3e-16 seq225968 89.7 6e-13 seq36877 89.7 6e-13 >seq121512 Length=219671 Score = 111 bits (122), Expect = 2e-19 Identities = 300/453 (66%), Gaps = 12/453 (3%) Strand=Plus/Minus Query 65070 CTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATT 65129 |||||| |||||| | | || || || || || ||||| ||||||||||| || || || Sbjct 213035 CTTCGCGGAGCGCATCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTT 212976 Query 65130 CTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189 |||||| || | ||| | |||||||| || |||||||| ||||| |||||| || || Sbjct 212975 CTGCGCCATCTTCTGGCTCAAGAAGCGCGGGCTCATGCCGGGCCTCACCTTCTCCAACGA 212916 Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGA--CT 65247 || || ||||| || ||||| || ||| || || ||| |||| | | | || Sbjct 212915 GCTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCCTCCTCTACGACATCCT 212856 Query 65248 TTGCGTAA---TAGACCCACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGAG 65304 ||| | | || | | | ||| || || |||||| ||||| || || Sbjct 212855 CCGCGGCAAGCTGGA-CGAGTCCCG----CGTCTTCGAGATCGTGTCCGAGGCCGTGGAC 212801 Query 65305 ATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAG 65364 || |||| | |||| ||| ||||| ||||| || ||| |||| |||||| || Sbjct 212800 ATCGAGAGGGAGTTCGTCTGCGACGCGCTCCCCTGCGCGCTCGTCGGCATGAACGGCGAC 212741 Query 65365 AAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGGTGCCA 65424 ||| | ||||||| |||| || | || || || ||| | | |||| ||| | Sbjct 212740 CTCATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTC-ATGGCGCTGGGCTGCAA 212682 Query 65425 -CCCATTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAA 65483 | | ||||| | || || || |||| ||||| ||| || | || || Sbjct 212681 GAAGCTGTACAACGCCACCAACCCGTTCGACTGGATGGAGCTCATCTCGCTGCAGGGCAA 212622 Query 65484 GACCAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516 |||||||||||| |||||||| || || || || Sbjct 212621 GACCAACTTCTTCGAGAAGCGCGTCGGCGAGTA 212589 >seq170665 Length=56631 Score = 100 bits (110), Expect = 3e-16 Identities = 195/287 (68%), Gaps = 12/287 (4%) Strand=Plus/Minus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 || |||||||||||||||||||| |||||| | ||||| |||||||| | | ||| Sbjct 42495 TTCGTGGAGATGTTTGTTGGTGTTGGTGCCTCCCGTGTTCGTGATCTCTTCAAGAAGGCC 42436 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACG- 175514 || ||| || || || || || ||||||| |||||||| || || | |||| | Sbjct 42435 AAGGAGAATGCTCCTTGCATAGTGTTTGTTGATGAAATTGATGCTGTTGGGAGGCAAAGA 42376 Query 175515 ----CAGCGCT-GGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTA 175569 ||| | |||||| | || || || || || || || | ||||| ||| Sbjct 42375 GGAACAGGTATCGGTGGT------GGGAACGATGAAAGGGAGCAGACTCTCAATCAGCTA 42322 Query 175570 CTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAAT 175629 || || ||||||||||| ||||| | |||||||| | ||| |||| ||||| || Sbjct 42321 CTGACTGAGATGGATGGTTTTGAGGGCAACACTGGCATCATTGTTGTTGCTGCCACCAAC 42262 Query 175630 CGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGA 175676 | | || ||| | ||| ||| | ||| | || || || ||||| Sbjct 42261 AGGGCTGACATCTTGGATTCCGCTTTGCTTAGACCTGGACGCTTTGA 42215 >seq225968 Length=28617 Score = 89.7 bits (98), Expect = 6e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 75129 GGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGGC 75188 |||||| ||||| || ||||| ||| |||| || || |||| | || || | || Sbjct 18409 GGGACTTTGATTATGACTACTTCGGTTTCAAGACTCTGGAGAGGTCTTACCTCCTGAAGC 18468 Query 75189 TCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCC 75248 ||| ||| | | | |||| || ||| ||||||| ||| | || || | || |||| Sbjct 18469 TCGGTGGAGTTGTTGTTGAAAGGCCGCAGCACATGTTAATGAGAGTTTCAGTAGGGATCC 18528 Query 75249 ACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCA 75308 || ||| |||||||| |||| | | || ||| | |||||||| | ||| | Sbjct 18529 ACAAGGATGACATTGACTCTGCCATCAGAACTTACCATCTCATGTCCCAGCGCTGGTTTA 18588 Query 75309 TTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAG 75355 ||| || | |||||||| ||||||||||| || || ||||| ||| Sbjct 18589 CTCATGCTTCGCCAACCCTTTTCAATGCTGGCACCCCGAGACCTCAG 18635 >seq36877 Length=36277 Score = 89.7 bits (98), Expect = 6e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 177592 GTCGCGACAACATATTCATCAGCCTCTTCTTGTTGAAGCATGAGCCACATGGCTTCAACA 177651 || ||||||||||| ||||||| || || || || ||||| ||||||||||| |||||| Sbjct 34992 GTGGCGACAACATAATCATCAGGCTTGTCCTGCTGGAGCATAAGCCACATGGCCTCAACA 35051 Query 177652 TAGTCCTTGGCATGACCCCAGTCTCTGGCAGCGTTGAGGTTACCGAG 177698 || ||| ||| ||||| || ||||| ||| |||||| ||||| Sbjct 35052 TAATCCCCGGCGAAGCCCCAATCCCTGGCGGCGGAGAGGTTGCCGAG 35098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592846849096480