Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_020871.1 Length=133057 Score E Sequences producing significant alignments: (Bits) Value seq46653 179 3e-40 seq342286 91.5 1e-13 >seq46653 Length=1539 Score = 179 bits (198), Expect = 3e-40 Identities = 601/929 (65%), Gaps = 6/929 (1%) Strand=Plus/Plus Query 89449 TATCCGTCTTTCTATCGAGCTTACAAAGAGTTAACTACAAATTACTGGTTGCCTGATGAG 89508 || ||||| |||||||| || ||||| || | | || || | |||| | || || ||| Sbjct 3 TACCCGTCGTTCTATCGCGCCTACAAGGAACTCTCGACCAACTTCTGGATTCCGGACGAG 62 Query 89509 GTAGACATGAAGAGCGATGCCAAGCAGTACAACCACTTATCCGAAGAAGAGAAATATGCG 89568 || ||||||||| |||| |||||||||||| | | | || | ||||| | || Sbjct 63 GTCGACATGAAGGGCGACGCCAAGCAGTACGGCGAGCTCTCGGCGCGCGAGAAGAACGCC 122 Query 89569 TTTGATTCCATTATCGGACTTTTAGCTACACTTGACTCACCCCAAACACGTTTTATTTAT 89628 | || ||||| ||||| || | || || || || || || || || ||||| || || Sbjct 123 TACGACTCCATCATCGGCCTGCTCGCCACGCTGGATTCGCCGCAGACGCGTTTCATCTAC 182 Query 89629 AATATCGCAGAGTATGTCAGTGATGCCTCTGTTCATGCTATTACAGCTATCATTGCACAA 89688 || |||| || || ||| || | | | || || | | | || ||||| | || Sbjct 183 AACGTCGCCGAATACATCACCGACCCGGCCGCGCACGCCAATGCCGCGATCATCGGCCAG 242 Query 89689 CAAGAGGCTATTCATAATGAGAGTTATTCTTATGTACTTGCTTCTATTACTAACTTACAA 89748 || || | || || || ||||| || || || || || || || || | | Sbjct 243 CAGGAAGTGATCCACAACGAGAGCTACAGCTACGTGCTGGCCTCGATCACCGGCCTGGCC 302 Query 89749 GAGCAGAATCGAGTATTTGAGGAAGCTAGAACACACCCTACGATTATTAAACGTAATGCA 89808 || ||||| || || || || || | || ||||| ||||| || || || Sbjct 303 GACCAGAACCGCGTGTTCGAACTCGCGCGCACGCACCCCACGATCATCGCGCGCAACCAG 362 Query 89809 CCTATTATGAAGTCTTATGACGATTTCATGAATAACAAAACACCTGAAAATATGGTAAAA 89868 || || |||| || || ||||| |||||| | || | | || | || | Sbjct 363 CCGATCATGACCTCGTACGACGACTTCATGCGCGAGAAGTCCGCCGAGACGCTGATCCGC 422 Query 89869 GCTTTAGTACAGTCATCTATCTTAGAGGGTATTAATTTCTACAGCGGTTTTGCTTACTTC 89928 | | | ||||| || ||| | || || || || |||||| ||| || || |||||| Sbjct 423 TCGCTGATCCAGTCGTCGATCCTGGAAGGCATCAACTTCTACTCCGGCTTCGCCTACTTC 482 Query 89929 TATAACCTTGTTCGTCAAAACAAGATGACGGGAACAGGTAAAATCATTAGCTTCATTAAT 89988 || ||||| || || || ||| |||||| || || || || ||||| |||||||| || Sbjct 483 TACAACCTGGTCCGCCAGAACCGGATGACCGGCACCGGCAAGATCATCAGCTTCATCAAC 542 Query 89989 CGTGATGAGTTAGCCCATTCGAAGTTTATTTCTGAGCTAATTAGAGCTATTGTAGGGGAA 90048 || || ||| | || ||||| ||||| || || || || | || || | || || Sbjct 543 CGCGACGAGCTGGCGCATTCCAAGTTCATCAGCGAACTGATCCGCGCGATCATCGGCGAG 602 Query 90049 AACCCTGAACTACAAACAGATGAACTAAATGACTACGTGTATGCTTCTTTTAGACATGCC 90108 |||| || || || || || | || ||||| | | | || || || Sbjct 603 AACCAGAGCCTGCAGGGCGACGAGCTCACCGAGTACGTACACACCGCGTTCGAGCACGCG 662 Query 90109 GTAGAGCTAGAACAAGCG-TGGTCTAGTGAGGTACTACAGGGCATTGAAGGAATTGATGT 90167 | ||||| ||| | ||| ||| | |||||| || | ||||| || || || || || Sbjct 663 ATCGAGCTGGAA-ACGCGCTGGACGGCTGAGGTGCTCGACGGCATCGACGGCATCGACGT 721 Query 90168 GGAAGAGATGTTAGACTATGTAAAATATCGTGCTAATAAAATGTTAGGGATGCTAGG--T 90225 || |||||| | ||| || || || || || || || ||| || ||||| || | Sbjct 722 CGACGAGATGGTCCGCTACGTGAAGTACCGCGCCAACAAGATGGCCGGCATGCTCGGCAT 781 Query 90226 CTTCAACCAATGTATCAAGGTCACACAGAAAATTCTATGACATGGATTAAAGCTTACGCC 90285 | || | | | | | ||| || || || ||| | ||||| || || ||||| Sbjct 782 CGAGAAGCTCTACAGCGA-GTCGAAC-GAGAACGTGATGCCGTGGATCAAGGCGTACGCG 839 Query 90286 GATAACTTTACAGAAACAAAAACCGACTTTTTCGAAATGCGTAACTCTAGTTACAAGAAA 90345 || ||||| || || || || || ||||| ||||| ||||| || | ||||||||| Sbjct 840 GACAACTTCACCGAGACGAAGACGGACTTCTTCGAGATGCGGAATGCGTCTTACAAGAAG 899 Query 90346 ACAAACTTAGACAATGGGTTCGATGACTT 90374 || |||| || || |||||||| ||||| Sbjct 900 ACGAACTCGGATAACGGGTTCGACGACTT 928 >seq342286 Length=214 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 89825 ATGACGATTTCATGAATAACAAAACACCTGAAAATATGGTAAAAGCTTTAGTACAGTCAT 89884 |||||||||||||| | || || | |||| || | || | || | ||||| | Sbjct 214 ATGACGATTTCATGCGCGAGAAGACTGCCGAAACCCTGCTGAAGTCGTTGATCCAGTCCT 155 Query 89885 CTATCTTAGAGGGTATTAATTTCTACAGCGGTTTTGCTTACTTCTATAACCTTGTTCGTC 89944 | ||| | || || || || ||||| |||||| || |||||||| ||| | || || | Sbjct 154 CGATCCTGGAAGGCATCAACTTCTATTCCGGTTTCGCGTACTTCTACAACATGGTGCGGC 95 Query 89945 AAAACAAGATGACGGGAACAGGTAAAATCATTAGCTTCATTAATCGTGATGAGTTAGCCC 90004 | ||| |||| || || || || ||||| |||||||| || ||||||||| | |||| Sbjct 94 AGAACCGCATGAACGGCACCGGCAAGATCATCAGCTTCATCAACCGTGATGAGCTGGCCC 35 Query 90005 ATTCGAAGTTTAT 90017 | | ||||| || Sbjct 34 ACACCAAGTTCAT 22 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423067790219858