Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq189152 104 4e-17 seq248630 87.8 3e-12 >seq189152 Length=79535 Score = 104 bits (114), Expect = 4e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || ||||| || | |||| ||| || |||||| || || | || || | | Sbjct 37331 CGGAGGACCAGGTGAAGGGTAGACTCCTTCTGAATATTGTAATCTGCCAAAGTGCGCTCA 37390 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | || ||||| ||||| || | ||||| || ||||| || || ||||||||| Sbjct 37391 TCCTCGAGCTGCTTTCCAGCAAAGATGAGCCTCTGCTGGTCAGGCGGGATACCTTCTTTA 37450 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || || | || | ||| ||| || ||||| ||||||||| ||||| || Sbjct 37451 TCCTGGATCTTAGCCTTCACATTATCAATGGTGTCGGAGCTCTCAACTTCAAGAGTGATG 37510 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || ||||| || || |||||||| ||||| Sbjct 37511 GTCTTTCCGGTTAGTGTCTTGACAAATATCTGCAT 37545 Score = 98.7 bits (108), Expect = 2e-15 Identities = 164/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||| | ||| ||||| | | || || |||| || | |||| ||| || | ||||| Sbjct 37081 AATCTGTATGCCACCACGTAGGCGGAGGACCAAGTGAAGAGTAGACTCCTTCTAGATATT 37140 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || || | ||||| | || || | || ||||||||||| || | ||||| || Sbjct 37141 GTAATCCGCCAACGTACGCCCGTCCTCGAGCTGCTTTCCGGCAAAGATGAGCCTCTGCTG 37200 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||||| || || ||||| ||||| || || |||| || | ||| ||| || || || Sbjct 37201 GTCAGGCGGGATACCTTCCTTATCCTGGATCTTGGCCTTCACATTATCAATGGTGTCAGA 37260 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||| || || || || || || || ||||||||||| ||||| || ||||| Sbjct 37261 GCCCTCAACCTCAAGTGTAATGGTCTTCCCGGTTAGCGTTTTGACAAAGATCTGCAT 37317 >seq248630 Length=92124 Score = 87.8 bits (96), Expect = 3e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || | ||| || |||||||| || || | ||| || || || || || || || || Sbjct 18114 ATCCTCAAGTTGCTTGCCGGCAAATATCAACCGCTGCTGGTCTGGGGGGATGCCCTCCTT 18173 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||||| || || ||| | ||| ||| ||||||||||||||||| || || || || Sbjct 18174 GTCTTGGATCTTCACTTTGACATTGTCAATCGTATCGGAAGACTCAACCTCGAGGGTGAT 18233 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || | || || || || ||||| |||||||| Sbjct 18234 GGTCTTGTCGGTGAGGGTCTTCACAAAGATTTGCAT 18269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 894040320384720