Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq189152 107 4e-18 seq248630 100 6e-16 >seq189152 Length=79535 Score = 107 bits (118), Expect = 4e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 ||||| ||||| | || || || ||||| || | || || ||||||||||| | ||| Sbjct 37364 ATATTGTAATCTGCCAAAGTGCGCTCATCCTCGAGCTGCTTTCCAGCAAAGATGAGCCTC 37423 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || || ||||| || || ||||||||||| || || ||| || |||||| || | Sbjct 37424 TGCTGGTCAGGCGGGATACCTTCTTTATCCTGGATCTTAGCCTTCACATTATCAATGGTG 37483 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || || ||||| ||||| ||||| || || |||| ||| || | |||||||||| Sbjct 37484 TCGGAGCTCTCAACTTCAAGAGTGATGGTCTTTCCGGTTAGTGTCTTGACAAATATCTGC 37543 Query 192535 AT 192536 || Sbjct 37544 AT 37545 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||||| | |||| ||| ||||||| ||| || || || |||||| Sbjct 37544 ATGCCACCACGGAGACGGAGGACTAGATGAAAAGTAGACTCCTTCTGAATGTTGTAATCA 37603 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | ||||| || |||| || | || || ||||| ||||| | ||||||||||| ||| Sbjct 37604 GCCAATGTACGCCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGCCTCTGTTGATCTGGT 37663 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || || || || || || ||||| || | | || || Sbjct 37664 GGGATACCCTCCTTGTCCTGGATCTTTGCCTTGACATTGTCGATGGTGCCCGAACTCTCA 37723 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || |||||||| ||||| || || || | ||||| | ||| |||||||| Sbjct 37724 ACCTCTAGAGTTATGGTCTTCCCGGTAAGAGTTTTCACAAAGATCTGCAT 37773 >seq248630 Length=92124 Score = 100 bits (110), Expect = 6e-16 Identities = 132/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 |||||| ||||||| | |||||| | || || | || || ||||||||||| | | Sbjct 18315 GATATTGTAATCAGCAAGTGTTCGCCCGTCCTCGAGCTGCTTGCCAGCAAAGATGAGCCG 18374 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| ||||| ||||| ||||| || ||||||||||| || | || ||||| || | Sbjct 18375 CTGCTGATCTGGTGGGATTCCCTCCTTATCTTGTATCTTTTCCTTGACATTGTCGATCGT 18434 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 || || || || || || || || ||||| || ||||| | | || ||||| ||||| Sbjct 18435 GTCAGATGACTCAACCTCAAGTGTGATGGTCTTGCCAGTGAGGATCTTCATAAAGATCTG 18494 Query 192534 CAT 192536 ||| Sbjct 18495 CAT 18497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 978183001033350