Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_021344.2 Length=176227 Score E Sequences producing significant alignments: (Bits) Value seq260686 248 1e-60 seq1462 206 3e-48 seq498467 185 1e-41 seq15764 114 1e-20 seq494847 87.8 2e-12 >seq260686 Length=13603 Score = 248 bits (274), Expect = 1e-60 Identities = 435/626 (69%), Gaps = 22/626 (4%) Strand=Plus/Plus Query 41641 TAAGCTGTCGTTACCTACGCCTATTATGGCTGGTGTGCGTACTCCTACGCGTCAGTTTTC 41700 |||| | ||| | || ||||| |||||| | || ||||| || || ||||| ||||| Sbjct 5174 TAAGATTTCGCTGCCGACGCCAATTATGTCCGGCGTGCGCACCCCGACGCGCCAGTTCAG 5233 Query 41701 CAGTTGCGTAGTGATTGAATCAGGTGATTCACTGGGTTCTCTGAATGCTGTAACCTCT-- 41758 | |||||| ||||||| | || || || | ||| | || || ||||| Sbjct 5234 CTCCTGCGTACTGATTGAGTGCGGCGACAGCCTTGATTCCATTAACGCC---ACCTCCAG 5290 Query 41759 -GCGATCGTGAAGTATATTTCACAACGTGCTGGTATCGGTGTAAACGCCGGACATATTCG 41817 ||||| |||||||| |||| || ||||| |||||||| | |||||||| | || || Sbjct 5291 CGCGATTGTGAAGTACGTTTCTCAGCGTGCCGGTATCGGCATTAACGCCGGTCGCATCCG 5350 Query 41818 CGCGATGGGTTCTAAAATCCGTGGTGGTGAAGCAGTTCATACAGGCGTGATCCCGTTCTG 41877 ||| |||| ||||| || ||||||||| | || || ||| || ||||||| Sbjct 5351 TGCGCTGGGCAGCCCGATCCGCGGCGGTGAAGCATTCCACACCGGCTGCATTCCGTTCTA 5410 Query 41878 GAAACATATTCAGACAGCGGTTAAATCCTGTTCACAAGGTGGTGTTCGTGGTGGTGCTGC 41937 || || | ||||| ||||| || ||||| || || || || || || || ||||| || Sbjct 5411 TAAGCACTTCCAGACCGCGGTGAAGTCCTGCTCTCAGGGCGGCGTGCGCGGCGGTGCAGC 5470 Query 41938 AACGTTGTATTATCCGATCTGGCATTTGGAAGTTGAAAACCTGCTGGTTCTGAAAAACAA 41997 || ||| || || || |||||| ||||||| |||| ||||||||| ||||| ||||| Sbjct 5471 GACCCTGTTCTACCCAATGTGGCATCTGGAAGTGGAAAGCCTGCTGGTGCTGAAGAACAA 5530 Query 41998 CAAAGGTGTTGAAAACAACCGTATCCGTCACCTGGATTATGGCGTACAGCTTAACGATTT 42057 | || |||||| |||||| | ||||| |||| || ||||| ||||| ||| | | Sbjct 5531 CCGCGGCGTTGAAGGCAACCGCGTGCGTCATATGGACTACGGCGTGCAGCTGAACAAGCT 5590 Query 42058 GATGTATAAACGTTTGATGAATAACGATTACATCACTCTGTTCAGCC---CTGATGTTGC 42114 ||||||| | || || |||| || | || ||||||||||||| | || | ||| Sbjct 5591 GATGTATCAGCGCCTGCTGAAGGGTGAAGAGATTACTCTGTTCAGCCCGTCCGACG-TGC 5649 Query 42115 TAACGATCGTCTGTATGATGCGTTCTATCAAGCGGATCAGACTGAATTCGAAGAACTGTA 42174 | | ||||||| ||||||| || || |||||| ||| || || ||||| Sbjct 5650 -----CTGGCTTGTATGACGCGTTCT-TC--GCCGATCAGGATGAGTTTGAGCGCCTGTA 5701 Query 42175 TACCAGCCTTGAAAAAGACCCGACTG--TACGCAAGAAACGTATTAAAGCGGTAGATCTG 42232 |||| || ||||| |||| | | |||||| | || | || |||||||||||| Sbjct 5702 CACCAAATACGAGAAAGA--CGACAGCATCCGCAAGCAGCGCGTGAAGGCGGTAGATCTG 5759 Query 42233 TTCCAGTTGCTTGCACAGGAACGCGC 42258 ||| | || | ||||||||||| Sbjct 5760 TTCTCGCTGATGATGCAGGAACGCGC 5785 Score = 123 bits (136), Expect = 3e-23 Identities = 170/235 (72%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 43427 TTTGAAAAGCTGACTGAAAAACAACTGTCATTCTTCTGGCGACCGGAAGAAGTGGATCTG 43486 ||||||||||||| ||||| || || || ||||||||||| |||||||||||||| | Sbjct 7051 TTTGAAAAGCTGATCGAAAAGCAGCTCTCTTTCTTCTGGCGCCCGGAAGAAGTGGACGTC 7110 Query 43487 TCGATTGACCGTATGCAGTATGCGAAAATGCCGGAACATGAAAAAATCATTTTCGATTCT 43546 ||| || ||||| | ||| | |||| || || |||||| ||| || Sbjct 7111 TCGCGCGATCGTATTGACTATCAGGCGCTGCCAGAGCACGAAAAACACATCTTTATCAGC 7170 Query 43547 AACCTGCAATATCAAACCCTACTGGATACCATTCAGGGACGCGGCCCTAACCTTGCATTT 43606 |||||| | ||||| || || ||||| | |||||||||||| |||| ||| | || || Sbjct 7171 AACCTGAAGTATCAGACTCTGCTGGACTCTATTCAGGGACGCAGCCCGAACGTGGCGTTG 7230 Query 43607 CTCCCGATTGCCTCTGATGTATCAA-TGGAAACGTGGATCGAAACATGGGCGTTC 43660 || ||| | ||| ||| || ||||||| ||||| ||||| ||||||||| Sbjct 7231 CTGCCGCTGATCTC-GATCCCGGAACTGGAAACCTGGATTGAAACCTGGGCGTTC 7284 >seq1462 Length=4781 Score = 206 bits (228), Expect = 3e-48 Identities = 304/429 (71%), Gaps = 6/429 (1%) Strand=Plus/Plus Query 41648 TCGTTACCTACGCCTATTATGGCTGGTGTGCGTACTCCTACGCGTCAGTTTTCCAGTTGC 41707 || ||||||||||| || |||||||| || || || || || || || || | ||| Sbjct 1033 TCCTTACCTACGCCAATCATGGCTGGGGTACGGACGCCGACTCGCCAATTCAGCTCATGC 1092 Query 41708 GTAGTGATTGAATCAGGTGATTCACTGGGTTCTCTGAATGCTGTAACCTCT---GCGATC 41764 || | || || | || ||| | | ||| | || || || ||| || ||| Sbjct 1093 GTGCTTATCGAGTGTGGCGATAGCTTAGACTCTATCAACGCC---ACTTCTAGTGCTATC 1149 Query 41765 GTGAAGTATATTTCACAACGTGCTGGTATCGGTGTAAACGCCGGACATATTCGCGCGATG 41824 || || || |||||||||| || || |||||| | || || || | |||||| ||| | Sbjct 1150 GTTAAATACGTTTCACAACGCGCAGGGATCGGTATCAATGCTGGCCGTATTCGTGCGCTA 1209 Query 41825 GGTTCTAAAATCCGTGGTGGTGAAGCAGTTCATACAGGCGTGATCCCGTTCTGGAAACAT 41884 || |||||||||||||||||| | ||||| || |||||||||| ||||| Sbjct 1210 GGCAGCCCAATCCGTGGTGGTGAAGCTTTCCATACCGGTTGTATCCCGTTCTACAAACAC 1269 Query 41885 ATTCAGACAGCGGTTAAATCCTGTTCACAAGGTGGTGTTCGTGGTGGTGCTGCAACGTTG 41944 | ||||| || || ||||| || || ||||| || || || || ||||| || || || Sbjct 1270 TTCCAGACGGCCGTGAAATCTTGCTCGCAAGGCGGCGTACGCGGGGGTGCCGCGACACTG 1329 Query 41945 TATTATCCGATCTGGCATTTGGAAGTTGAAAACCTGCTGGTTCTGAAAAACAACAAAGGT 42004 | ||| || || ||||| |||||| |||||| | | | || |||||||| ||| ||| Sbjct 1330 TTTTACCCTATGTGGCACTTGGAAATTGAAAGCTTATTAGTCCTGAAAAATAACCGTGGT 1389 Query 42005 GTTGAAAACAACCGTATCCGTCACCTGGATTATGGCGTACAGCTTAACGATTTGATGTAT 42064 |||||| |||||| |||||||||| ||||| |||||||| | ||| | | |||||| Sbjct 1390 GTTGAAGGTAACCGTGTCCGTCACCTAGATTACGGCGTACAAATCAACAAACTCATGTAT 1449 Query 42065 AAACGTTTG 42073 ||||| || Sbjct 1450 CAACGTCTG 1458 Score = 154 bits (170), Expect = 2e-32 Identities = 297/436 (68%), Gaps = 18/436 (4%) Strand=Plus/Plus Query 42812 GACTGGGAATGGTTGCGTGGTGAAATCAAAAAATACGGCTTGCGTAACTCAACGCTTTCT 42871 || |||||| | || |||| |||||||| | | | ||||| ||||||||||||||||| Sbjct 2209 GATTGGGAAAGCTTACGTGAAGAAATCAAGACACATGGCTTACGTAACTCAACGCTTTCA 2268 Query 42872 GCTTTAATGCCATGTGAGAGTAGTTCTCAAGTAAGTAACTCCACAAACGGTATTGAACCG 42931 || || ||||||| || | ||| || | ||| | ||||||||||| || || Sbjct 2269 GCATTGATGCCATCAGAAACCTCTTCGCAGATTTCTAATGCTACAAACGGTATCGAGCCT 2328 Query 42932 CCTCGCGGCCCTGTGAGTGTGAAATCTTCGAAGGAAGGTTCATTTAAC--CAGGTAGTTC 42989 || |||||| ||| ||| | ||| | ||||| || ||| |||| || ||||| |||| Sbjct 2329 CCACGCGGCTATGTCAGTATCAAAGCCTCGAAAGACGGT--ATTTTACGTCAGGTCGTTC 2386 Query 42990 CGAACCATAA----TGACCAGATTGATTTCTATGATTATCTCTGGACAATGGCTAAACGC 43045 | | || | | || |||| | |||| || ||| |||| || Sbjct 2387 CAGAGTATGAGCGCTTACAAGATCAGT----ATGAGCTGCTATGGGAAATGCCTTC---- 2438 Query 43046 GGTAACAAAGGTTATCTGTCTCATGTTGCTGTTATGCAGAAGTTTGTTGACCAGGCTATC 43105 |||| | ||||| | | ||| | |||||||||||||||| ||||| |||||| Sbjct 2439 --TAACGATGGTTACTTACAACTTGTCGGGATTATGCAGAAGTTTGTCGACCAAGCTATC 2496 Query 43106 TCTGCAAACACCGACTATGATCCGGCTAACTATGCTGATGGTAAAGTTCCGACTGAGGAA 43165 ||| |||||||| |||| |||||| | || ||| || ||||| |||| || | Sbjct 2497 TCTTCAAACACCAACTACGATCCGACACGTTACACTGGCGGGAAAGTACCGATGCAGCAG 2556 Query 43166 ATCTTAGATGACCTCCTGTACGCGAACTATTTCGGTGTTAAAACACTGTATTACCACAAC 43225 | | | ||||| ||| |||| | | ||||| || ||||| || || || || ||| Sbjct 2557 TTACTGAAAGACCTGCTGACCGCGTATAAATTCGGCGTGAAAACGCTTTACTATCAAAAC 2616 Query 43226 ACCCGCGATGGTGCTG 43241 || || |||||||||| Sbjct 2617 ACGCGTGATGGTGCTG 2632 >seq498467 Length=2746 Score = 185 bits (204), Expect = 1e-41 Identities = 617/941 (66%), Gaps = 37/941 (4%) Strand=Plus/Minus Query 152270 CAACGAGAACGCGAACAAAGAT-GCAAGGGTATTCCCGACACAGCGCGATTTGCTGGCGG 152328 ||| || || || || || ||| |||||| || ||| || ||||||||| ||||||| | Sbjct 2057 CAATGAAAATGCCAATAAGGATAGCAAGGTGATCCCC-ACTCAGCGCGATCTGCTGGCCG 1999 Query 152329 GTATCGTAGCGAAGCATTTCGCCCGTAATCATATCCTCCCGAAACATATCGTAGAAGCGC 152388 | ||||| || || || | ||||||| | ||||| || ||| || | || || | Sbjct 1998 GGATCGTCGCCAAACACTACGCCCGTCAGCATATGCTGCCGCGTGATGTGGTCAGCGCCC 1939 Query 152389 ATGATTCCGGTGACATCCACTATCACGATCTGGACTATAGCCCGTTCACCCCTTACACTA 152448 |||| ||| || ||||||||||||||||| ||||| ||||| ||| || Sbjct 1938 ATGAGCGCGGCGAGATCCACTATCACGATCTCGACTACTCGCCGTTTTTCCCGATGTTTA 1879 Query 152449 ACTGCTGTCTGGTTGACCTGAAAGGTATGCTGGAGAACGGTTTTAAAATGGGTAACGCGG 152508 ||||| ||| | |||||| || |||||| | |||| || |||||||||||||| | Sbjct 1878 ACTGCATGCTGATCGACCTGCGGGGCATGCTGACGCACGGCTTCAAAATGGGTAACGCCG 1819 Query 152509 ACATTGAACCGCCTAAATCGATCGGTGTTGCTACCGCTCTCATGGCGCAGATCACCGCAC 152568 | || ||||||||||| |||||| || ||||| ||| |||||||||| ||| | Sbjct 1818 AGATCGAACCGCCTAAGTCGATCTCCACCGCCACCGCCGTCACCGCGCAGATCATCGCCC 1759 Query 152569 AGATTGCCTCTCACCAGTACGGCGGGACAACCTTT--GCGAACGTGGATAAAGTGCTGGC 152626 || | ||| || ||||| || || ||| || || | | ||| |||||||||| Sbjct 1758 AGGTCGCCAGCCATATTTACGGGGGCACCACCATTAACCGTA--TTGATGAAGTGCTGGC 1701 Query 152627 TCCATACGTCGAAATGACATTCT-TCAAACATCTGCACGA-TGCTGAACATTACGGTATC 152684 || | ||| | ||| || || |||| | || | | || || | | || | Sbjct 1700 GCCGTTCGTGG--ATGCCAGCCTGGCAAAACACCGCGCCACCGCCGACGA--ATGGCA-- 1647 Query 152685 GAACACTATAATGATTATGTGTATGCGATTGAAAAGACTGAAAAAGATGTG-TATGATGC 152743 || | | | | | ||||| | || |||||||| ||| || || || Sbjct 1646 GATTGC--CGACGCCGAAGCCTATGCCCGCGCGCGCACCGAAAAAGA-GTGCTACGACGC 1590 Query 152744 GTTCCAGTCCTATGAGTATGAAGTAAACACCCTACATACTGCCAACGGACAAACCCCGTT 152803 || ||||| |||||||| || || || || || || |||||||| || || ||||| Sbjct 1589 CTTTCAGTCGCTGGAGTATGAGGTCAATACGCTGCACACCGCCAACGGCCAGACGCCGTT 1530 Query 152804 TGTTACCATCACTTTCGGTACTGGTACGAGCGATTATGAACGCATGATCCAGAAAGCGAT 152863 ||| ||| || ||||| || || ||| | ||| | |||||| | |||| Sbjct 1529 TGTCACCTTCGGCTTCGGCCTCGGCACCAGCTGGGCAGCGCGCCTTATCCAGCAGTCGAT 1470 Query 152864 CCTGAAAAACCGTATTCGCGGCCTTGGTAAAGAGGGTATTACTCCGGTATTCCCGAAACT 152923 |||| ||||| || ||| || |||||| | | ||| | || || || || || Sbjct 1469 CCTGCGTAACCGCATCGCCGGGCTGGGTAAAAATCACAAAACTGCCGTGTTTCCCAAGCT 1410 Query 152924 GGTTATGTTCATGGAAAAAGGAATTAACCTTGATCCAGAGGATCAAAACTATGACATCAA 152983 ||| | ||| || || | |||| || | || | ||| || || ||||| Sbjct 1409 GGTGTTCGCCATCAAAGCCGGGCTGAACCACCGTCGCGGCGAGCCAAATTACGATATCAA 1350 Query 152984 ACAACTTGCCCTGGAATGTGCTTCGAAACGCATGTACCCAGATATC----ATTA-GCGCA 153038 ||| || || ||||| || || |||||||||||||| |||||| |||| | || Sbjct 1349 ACAGCTGGCGCTGGAGTGCGCCAGTAAACGCATGTACCCCGATATCCTCAATTATGACCA 1290 Query 153039 TCTAATAACCGCCGTATCACTGGTTCTAGCGTTCCTGTATCTCCTATGGGTTGTCGCAGT 153098 | | || | |||| |||| |||| | | | || ||||| || ||||| Sbjct 1289 GGTGGT----GCAG-GTCACCGGTT----CGTT--TAAAACGCCAATGGGCTGCCGCAGC 1241 Query 153099 TTCCTTAGCGTGTGGCATGATGATAACGGTAATGAAATTCTGGATGGACGTAATAACCTT 153158 ||||| |||||| || | || ||||| | | || | || || || ||||| || Sbjct 1240 TTCCTCGGCGTGT---ATCAGGAGAACGGGGAACAGATCCACGAGGGGCGCAATAATATT 1184 Query 153159 GGTGTGGTGACAATCAACCTCCCGCGCATTGCGATCGAAGC 153199 || ||| | | ||||||| ||||||||||| | ||||| Sbjct 1183 GGCGTGATTAGCCTCAACCTGCCGCGCATTGCCCTGGAAGC 1143 >seq15764 Length=1899 Score = 114 bits (126), Expect = 1e-20 Identities = 177/250 (71%), Gaps = 2/250 (1%) Strand=Plus/Plus Query 43427 TTTGAAAAGCTGACTGAAAAACAACTGTCATTCTTCTGGCGACCGGAAGAAGTGGATCTG 43486 ||||||||||||| ||||| || || || ||||||||||| |||||||| || || | Sbjct 655 TTTGAAAAGCTGATCGAAAAGCAGCTCTCCTTCTTCTGGCGTCCGGAAGAGGTCGACGTT 714 Query 43487 TCGATTGACCGTATGCAGTATGCGAAAATGCCGGAACATGAAAAAATCATTTTCGATTCT 43546 || || || || | || | ||||||| || |||||| ||||| Sbjct 715 TCACGCGATCGCATCGATTACCAGGCGCTGCCGGACCACGAAAAACATATTTTTATCAGC 774 Query 43547 AACCTGCAATATCAAACCCTACTGGATACCATTCAGGGACGCGGCCCTAACCTTGCATTT 43606 |||||| ||||||| || || |||||| | |||||||| ||| |||| ||| | || | Sbjct 775 AACCTGAAATATCAGACGCTGCTGGATTCTATTCAGGGCCGCAGCCCGAACGTCGCGCTG 834 Query 43607 CTCCCGATTGCCTCTGATGTATCAA-TGGAAACGTGGATCGAAACATGGGCGTTCAGTGA 43665 || ||| | ||| ||| | || ||||||| ||||| ||||| ||||||||| || Sbjct 835 CTGCCGCTGATCTC-GATTCCTGAACTGGAAACCTGGATTGAAACCTGGGCGTTCTCAGA 893 Query 43666 AACAATTCAC 43675 || |||||| Sbjct 894 GACGATTCAC 903 >seq494847 Length=1062 Score = 87.8 bits (96), Expect = 2e-12 Identities = 171/253 (68%), Gaps = 0/253 (0%) Strand=Plus/Minus Query 40561 CGCGGGATCATCGTTTCCGCATGGAATCCGGTTGATCTTGATGCAATGGCTTTGCGTCCG 40620 ||| | ||||||||||| |||||||| | || || |||| ||||| || ||| Sbjct 388 CGCCGCATCATCGTTTCTGCATGGAACGTCGGCGAACTGGATGAGATGGCGCTGGCCCCG 329 Query 40621 TGTCACTGTTTCTTCCAGTTCGTCGTAATCAACGGTAAACTGTCTCTACAGTGGTATCAG 40680 || ||| |||||||||||| ||| |||| || || || || ||||||| Sbjct 328 TGCCACGCGTTCTTCCAGTTCTACGTTGCGGACGGCAAGCTCTCCTGCCAACTGTATCAG 269 Query 40681 CGTTCGGTTGATGTCTTCTTAGGGTTGCCGTTCAATATAGCCTCATACGCTCTCCTGACG 40740 || || ||| ||||| | || ||||||||||||| ||| |||||| | ||| | Sbjct 268 CGCTCCTGCGATATCTTCCTCGGCCTGCCGTTCAATATCGCCAGCTACGCTTTGCTGGTG 209 Query 40741 CATATTATCGCTGATATTTGCGGGTATGAAGTAGGCGATCTGGTTTGGACTGGTGGTGAT 40800 ||||| || || | |||| ||||| || ||| | || ||||| ||||| ||| Sbjct 208 CATATGATGGCCCAGCAGTGCGACCTGGAAGTGGGTGATTTTGTCTGGACCGGTGGCGAT 149 Query 40801 GTTCATATCTACA 40813 ||| | |||| Sbjct 148 ACCCATCTGTACA 136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560280149986920