Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_021529.2 Length=247511 Score E Sequences producing significant alignments: (Bits) Value seq260686 118 2e-21 seq498467 95.1 2e-14 seq65234 93.3 7e-14 >seq260686 Length=13603 Score = 118 bits (130), Expect = 2e-21 Identities = 150/203 (74%), Gaps = 4/203 (2%) Strand=Plus/Plus Query 63873 GGTGAA--ATTCGACACACTGGTGTAATCCCATTCTGGAAACACTTTCAGACTGCTGTGA 63930 |||||| |||| |||| | | || | ||| |||| || ||||| ||||| || |||| Sbjct 5376 GGTGAAGCATTCCACAC-CGGCTGCATTCCG-TTCTATAAGCACTTCCAGACCGCGGTGA 5433 Query 63931 AGTCATGTTCACAAGGTGGTGTTCGTGGTGGTGCTGCAACGCTAACTTACCCGATTTGGC 63990 |||| || || || || || || || || ||||| || || || ||||| || |||| Sbjct 5434 AGTCCTGCTCTCAGGGCGGCGTGCGCGGCGGTGCAGCGACCCTGTTCTACCCAATGTGGC 5493 Query 63991 ATTTAGAAGTTGAAAAACTTTTGGTGCTGAAGAACAACAAAGGCGTTGAAGAAAACCGTA 64050 || | ||||| |||| || ||||||||||||||||| |||||||||| ||||| Sbjct 5494 ATCTGGAAGTGGAAAGCCTGCTGGTGCTGAAGAACAACCGCGGCGTTGAAGGCAACCGCG 5553 Query 64051 TTCGTCATCTTGACTACAGTGTG 64073 | |||||| | |||||| | ||| Sbjct 5554 TGCGTCATATGGACTACGGCGTG 5576 >seq498467 Length=2746 Score = 95.1 bits (104), Expect = 2e-14 Identities = 230/343 (67%), Gaps = 4/343 (1%) Strand=Plus/Minus Query 173221 TGGAAAGAACTGACTGGTTACGGATTTAGTCTGTACAGCACACCAAGCGAATCGCTATGT 173280 ||||| || ||| | ||||| || || ||||||||||| || |||||| || || Sbjct 808 TGGAAGGAGGAGACCGACTACGGCTTCAGCCTGTACAGCACGCCGAGCGAAAACCTGTGC 749 Query 173281 GATCGTTTCTGTCGTCTTGATCAAGAGAAGTACGGTATCATTACTGGTATCAATGACAAA 173340 || || ||||| || || || | | | || | | | || ||| |||||| Sbjct 748 GACCGCTTCTGCCGCCTCGACGCCGCCGAATTTGGCGTGGTGCCGGGCGTCACCGACAAA 689 Query 173341 GACTACTATACAAACTCGTTCCACTTAGACGTATTCAAGAAAGTGAATCCGTTCGAGAAG 173400 | ||||| || ||| |||||| | ||||| || || || ||||||| ||| || Sbjct 688 GGTTACTACACCAACAGCTTCCACCTCGACGTTGAGAAAAAGGTTAATCCGTACGACAAA 629 Query 173401 ATTGACTTTGAAGCATCGTACCCAGCATAT-GCAAACGGCGGTTTCATTTGCTATGCAGA 173459 || ||||||||||| || || || || || ||||||||||| || ||||| | || Sbjct 628 ATCGACTTTGAAGCGGGCTATCC-GCCGATCGCCAACGGCGGTTTTATCTGCTACGGCGA 570 Query 173460 GTTCCCGAACATGCGCGACAATATCAAAGGTCTAGAACGTGTATGGGATTA-TGCTCATA 173518 || |||||| || | | || | || | || || || |||||||| ||| | | Sbjct 569 GTACCCGAATATCCAGCATAACCTGAAGGCACTGGAGGACGTCTGGGATTACAGCT-ACA 511 Query 173519 GCAAAGTTGCTTACTTCGGTACAAACACACCGATTGATCAATG 173561 || || | || | ||| || ||||| ||||||||| |||| Sbjct 510 GCCGCGTGCCCTATTACGGCACCAACACCCCGATTGATGAATG 468 >seq65234 Length=1614 Score = 93.3 bits (102), Expect = 7e-14 Identities = 265/402 (66%), Gaps = 14/402 (3%) Strand=Plus/Minus Query 63672 AAACTTTCTTTACCAACCCCGATCATGGCAGGTGTTCGTACGCCAACTCGACAATTTAGC 63731 ||| | ||| |||| || ||||| ||| |||| || | || |||||||| |||||||| Sbjct 1068 AAAATATCTCTACCCACACCGATTATGTCAGGAGTAAGAACACCAACTCGTCAATTTAGT 1009 Query 63732 TCATGTGTTAAAATCGAATCTGGCGACTCT-----CTGCATTCAGTCAACAAAGTAGCCG 63786 || ||||| ||| |||| || || | || ||| | | |||| ||| Sbjct 1008 TCTTGTGTGTTAATTGAATGTGCAGATAATTTAAACTCTATTAATGCTACAAC-TAGT-- 952 Query 63787 AAGCAATCATCAACTATATCAGTAAACGTGCTGGTATCGGTGTTAATGGCGGTGCTATTC 63846 ||||| | || ||| | | |||| || || || || |||| | ||| |||| Sbjct 951 --GCAATTGTAAAATATGTTTCTCAACGAGCAGGAATAGGCATTAACGCTGGTCAAATTC 894 Query 63847 GTGCTGAAGGCTCGGTTGTTCGAGCAGGTGAA--ATTCGACACACTGGTGTAATCCCATT 63904 | ||| ||| | | || || ||| ||| | || | | |||| ||| || Sbjct 893 GAGCTTTAGGAAGTCCTATCAGAAATGGAGAAGCATTTCATAC-CGGATGTATTCCTTTT 835 Query 63905 CTGGAAACACTTTCAGACTGCTGTGAAGTCATGTTCACAAGGTGGTGTTCGTGGTGGTGC 63964 | |||||||| || | || || || || ||||| |||||||| ||| | || || || Sbjct 834 -TATAAACACTTCCAAAGCGCAGTAAAATCTTGTTCTCAAGGTGGAGTTAGAGGAGGGGC 776 Query 63965 TGCAACGCTAACTTACCCGATTTGGCATTTAGAAGTTGAAAAACTTTTGGTGCTGAAGAA 64024 ||||| | |||||| || |||||| ||||| ||||||| | || || | || || Sbjct 775 CGCAACTGTTTTTTACCCAATATGGCATCTAGAAATTGAAAATTTATTAGTTTTAAAAAA 716 Query 64025 CAACAAAGGCGTTGAAGAAAACCGTATTCGTCATCTTGACTA 64066 || | ||| |||||||||| | | ||||||||||| || Sbjct 715 TAATAGAGGAATTGAAGAAAATAGAGTACGTCATCTTGATTA 674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786965491196360