Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_021534.1 Length=47552 Score E Sequences producing significant alignments: (Bits) Value seq198049 156 1e-33 seq83212 156 1e-33 seq55358 156 1e-33 seq497144 154 4e-33 seq153502 138 3e-28 seq2673 111 5e-20 seq226697 91.5 4e-14 seq207983 89.7 2e-13 seq89870 89.7 2e-13 >seq198049 Length=1958 Score = 156 bits (172), Expect = 1e-33 Identities = 295/434 (68%), Gaps = 0/434 (0%) Strand=Plus/Minus Query 42536 GTTGTTTTGGCAAACTCCCTCCCAATACTGTCTCCCTGCGACAGGAGGCCATTGACTATG 42595 || || || |||||||| | || || || ||||| ||| || |||||||| | | Sbjct 1932 GTGGTGTTTGCAAACTCTTTGCCGATCACATCACCCTGGCCCAGCAGACCATTGACCACG 1873 Query 42596 ACATCCGTTGTCAATTTGCCTTGGGCGGCCATATTTCTAAGCTCACCGATGCCAACCCCC 42655 ||||| ||||||| ||||| || |||||||| | | || ||||| ||| ||| Sbjct 1872 ACATCAGTTGTCAGCTTGCCCTGAGCGGCCATCGCGCGCATCTGCCCGATAGAAACGCCC 1813 Query 42656 AAAGAGTCGGCAAGAGCTATCATAAGCCGGTTGCCCTGCTCATTTACTGAGTTAAACTCA 42715 | || || || || |||| || |||| |||||||||||| || || ||||| || || Sbjct 1812 ATGGAATCAGCCAGGGCTACGATCAGCCTGTTGCCCTGCTCGTTCACAGAGTTGAATTCT 1753 Query 42716 TCTCCGCGAAGGGCGCCAGACGCCATGCCTTGTGCGAGCTGGATAATTGCGTTGCTTGCC 42775 || ||||| || ||||| || |||| || | || | || ||||| ||||| || Sbjct 1752 TCGCCGCGCAGCGCGCCGGATGCCAGCCCCGGCGCCAATTGAATAATGGCGTTCTCGGCT 1693 Query 42776 TCTTCGGCTGACGCGCCGGATACAACAAAACCCTGATTGATTATTGTTGTCAGCCTTGTC 42835 || | || | ||||| || || || || ||||| |||||||| | || ||| | | | Sbjct 1692 TCCTGCGCCGTGGCGCCAGAAACGACGAACCCCTGGTTGATTATCTTGGTGAGCTTCGCC 1633 Query 42836 AGGTCTTCCACGCTTACACCGTAGCTTCTGGTAGACCTCTCAAGTCTGGCGTACAAGGTG 42895 | || ||| ||||| ||||| | ||||| | ||| |||| ||||| | | Sbjct 1632 ACGTTTTCTGCGCTTGTTCCGTACTCGCGGGTAGCGCGCTCCAGTCGAGCGTAGAGCGAC 1573 Query 42896 GCCGTTGCGTCCAGTCCTGAGCGTGTTTTCTGCGCGATATCAAAAACACGATTAGTTACA 42955 || || || || || | ||| || ||| ||| | ||| ||||| || || | || || Sbjct 1572 GCTGTGGCATCGAGGCTTGAACGGGTTGACTGAGTGATGTCAAACACGCGCTGTGTGACT 1513 Query 42956 TCGGCAAGGGTTTC 42969 | || ||| |||| Sbjct 1512 TGGGTGAGGCTTTC 1499 >seq83212 Length=3491 Score = 156 bits (172), Expect = 1e-33 Identities = 274/399 (69%), Gaps = 0/399 (0%) Strand=Plus/Minus Query 37948 CATTAATAGCTGACCGCCAGCATAATTCCCACTGGTAACAGATGTTGTGGTTGCCGTCTC 38007 ||||| || ||| ||||| | || | || || | |||| | | || || |||| Sbjct 2166 CATTAGTATCTGCCCGCCGGAGTAGCTTCCGCTTATTACAGTGCTGGCAGTGGCGCTCTC 2107 Query 38008 TATCGGGGTATCTTCTGACTCGTTTAGCCCTGGAACCTCCTGACCATCAAGTCCGTCGAA 38067 || ||| ||| ||||||||||| || ||||||||||| || |||| | ||||| Sbjct 2106 AATTGGGAAATCCTCTGACTCGTTCTTGCCGGGAACCTCCTGCCCGTCAACGTCATCGAA 2047 Query 38068 CTGGTAAGGCTCAATGATTTGCCCTATAACATCACCTGGATTGTAGATGACATGAGTGGC 38127 ||| || ||| | || || || ||||||||||| || || | | | || Sbjct 2046 CTGATAGCCTTCATTTATCGTGCCGATCACATCACCTGGGTTATATACAGTAAACGACGC 1987 Query 38128 GCCGGGTAAAGACCCGAGGTTTGTTTCTGCATATCTAACCGATGAAATGGTGTATTTCCC 38187 || | | ||| || ||||| |||||| |||||| ||||| | ||||| | || Sbjct 1986 CCCCGCCATAGAGCCTAGGTTGCTTTCTGAATATCTGACCGAGCTGACTGTGTACCTTCC 1927 Query 38188 AAGGCCAAAATTCATGAACTCTGTGACGTACTTCAAATCGTCAATGTATTCAAAAAGAGA 38247 || ||||| ||||||||||| |||| ||| || | | | | || || || ||||| Sbjct 1926 AATACCAAAGTTCATGAACTCGGTGAGGTATTTGAGGTTGCCTGAATACTCGAACAGAGA 1867 Query 38248 TTCCTGAATCAGGTCAGGGAATGCCCTTATCTGACCGAAGTTGTCAGGTCTTGCCTCTCC 38307 |||||||| ||||||||||| ||||| ||| |||| | |||||||| ||||||| || Sbjct 1866 CTCCTGAATAAGGTCAGGGAAAGCCCTAATCAGACCATAATTGTCAGGCTTTGCCTCACC 1807 Query 38308 ATTTCGCGCAATATTGGTTTGCGATTTCAGGCTGTTATT 38346 ||| || || | || | || || ||||||||||| Sbjct 1806 ATTACGAGCGAGGTTAGACTGACCCTTAAGGCTGTTATT 1768 Score = 102 bits (112), Expect = 2e-17 Identities = 203/300 (68%), Gaps = 2/300 (1%) Strand=Plus/Minus Query 39732 TCGATATCC--ATCGTGAACCATTCATTGCACTTGTTGAGATAATTTGGGCTTCTCAACC 39789 |||||| || || ||||||| | ||||| || | ||||| || || || | ||||| Sbjct 339 TCGATAGCCTCATGCTGAACCACTGATTGCCGTTATCCAGATAGTTAGGACTGCGCAACC 280 Query 39790 ACTGCATAAATGCCCGCTCCTGCCTGAGCGTGAAAACCCATGTCAAACTCCATGTTACTG 39849 |||| ||| || || | ||| | ||||| | |||||||| || ||| | | Sbjct 279 ACTGGTAAAAGGCACGGTGCTGATCACGTGTGAATATCCATGTCAGGCTGAATGATGATT 220 Query 39850 CAACATCGGTCGTTAACTTTTGAAATATTGGCGCCCCAACCGCAGGCTGATCGCTGCGGA 39909 || ||| || | ||| || || |||||||| |||||| || || || |||||| Sbjct 219 TAAGGTCGTCAGTAAGCTTCTGGAAGATTGGCGCACCAACCTGTGGATGGTCAGTGCGGA 160 Query 39910 ATGGGGTTTGAGTCGTCATGTTCTTGCTGGCACGCTGCGCAAGCGGTAGCCATGATGGAT 39969 | || | | | || | ||| || | | ||| || ||||| ||||| |||| Sbjct 159 AACCCGTATCACTGGTGACGTTTTTATTAGACTTCTGAGCCAGCGGGAGCCAGTCAGGAT 100 Query 39970 AAGCTATAGCCATTATTCTGTTGCCCTTCTGGTTGCAGTAGTGTTGCTGGTAATAGCCTG 40029 || | |||||||||||||||| ||||| | ||| || ||||||| ||| || ||||| Sbjct 99 AATCAATAGCCATTATTCTGTAGCCCTCGCTGATGCTGTTGTGTTGCGGGTTATTGCCTG 40 Score = 87.8 bits (96), Expect = 5e-13 Identities = 191/283 (67%), Gaps = 10/283 (4%) Strand=Plus/Minus Query 36784 GTAAGCCTGCTTGTTTGTGTTTGGATCACGGTACTGAACGCTTACGCCATCATATGAGCC 36843 ||| |||||||| || ||| | |||| ||||| || || ||||| ||||| ||| Sbjct 3333 GTAGGCCTGCTTATTGGTGGTCGGATTGCGGTATTGGACCTCAACGCCGTCATACCCGCC 3274 Query 36844 TGGCAAAGTCATGTCATAAGACATTTTATAGCC---ATCAGCCTGCGTGTTT--CTGGTA 36898 || | |||||||| ||| | ||| || |||| | ||||| | ||| Sbjct 3273 AGGAAGCGTCATGTCGTAACTTAAAGAATATCCCGAATCAACA---GTGTTCGACCGGT- 3218 Query 36899 TTAAACACAGTTTCAGGGGTTGATTTTTGCTCATCTCTTGAGAAAGACAAGACGCCATCA 36958 |||| |||||| | ||| | ||| | | || | ||| || | |||| ||| Sbjct 3217 -TAAATACAGTTGCTGGGACACTTCTTTTCACGTCGAGCGTGAATGATAGAACGCTGTCA 3159 Query 36959 TCCCAAAATACAGTTACGCGAGCGGCATCACAGATGGTCTGGATTCGCTCACCAATGGAC 37018 ||||| | || |||| | ||| |||||||| ||||||| |||| || || | ||| Sbjct 3158 TCCCAGTAAACGCTTACCCCAGCAGCATCACAAATGGTCTCCATTCTCTGCCCCAGCGAC 3099 Query 37019 TTATCCTCATCGTCAAAGGTGTAATCAAAGTACCCAAGACGCT 37061 ||||||||| ||||||||||| ||||| || | ||| |||| Sbjct 3098 ACATCCTCATCATCAAAGGTGTAGTCAAAATAGCTAAGCCGCT 3056 >seq55358 Length=10594 Score = 156 bits (172), Expect = 1e-33 Identities = 295/434 (68%), Gaps = 0/434 (0%) Strand=Plus/Minus Query 42536 GTTGTTTTGGCAAACTCCCTCCCAATACTGTCTCCCTGCGACAGGAGGCCATTGACTATG 42595 || || || |||||||| | || || || ||||| ||| ||||||||||| | | Sbjct 6951 GTGGTGTTTGCAAACTCTTTGCCGATCACATCACCCTGGCCCAGTAGGCCATTGACCACG 6892 Query 42596 ACATCCGTTGTCAATTTGCCTTGGGCGGCCATATTTCTAAGCTCACCGATGCCAACCCCC 42655 || || || ||||| ||||| ||||| ||||| || | || || || ||| ||| Sbjct 6891 ACGTCAGTGGTCAACTTGCCCTGGGCTGCCATCGCTCGCATCTGCCCAATAGAAACGCCC 6832 Query 42656 AAAGAGTCGGCAAGAGCTATCATAAGCCGGTTGCCCTGCTCATTTACTGAGTTAAACTCA 42715 | || || || | |||| || |||| |||||||||||| || || ||||| || || Sbjct 6831 ATCGAATCAGCTAAGGCTACGATCAGCCTGTTGCCCTGCTCGTTCACAGAGTTGAATTCT 6772 Query 42716 TCTCCGCGAAGGGCGCCAGACGCCATGCCTTGTGCGAGCTGGATAATTGCGTTGCTTGCC 42775 || ||||| || |||||||| |||| || || | | || ||||| ||||| || Sbjct 6771 TCGCCGCGCAGTGCGCCAGATGCCAGCCCCTGCGACAATTGAATAATGGCGTTCTCGGCT 6712 Query 42776 TCTTCGGCTGACGCGCCGGATACAACAAAACCCTGATTGATTATTGTTGTCAGCCTTGTC 42835 || | || | ||||| || || || || ||||| |||||||| | || ||| | | | Sbjct 6711 TCCTGCGCCGTGGCGCCAGAAACGACGAACCCCTGGTTGATTATCTTGGTGAGCTTCGCC 6652 Query 42836 AGGTCTTCCACGCTTACACCGTAGCTTCTGGTAGACCTCTCAAGTCTGGCGTACAAGGTG 42895 | || ||| ||||| ||||| | ||||| | ||| |||| ||||| | | Sbjct 6651 ACGTTTTCTGCGCTTGTTCCGTACTCGCGGGTAGCGCGCTCCAGTCGAGCGTAGAGCGAC 6592 Query 42896 GCCGTTGCGTCCAGTCCTGAGCGTGTTTTCTGCGCGATATCAAAAACACGATTAGTTACA 42955 || || || || || | ||| || ||| ||| | ||| ||||| || || | || || Sbjct 6591 GCTGTGGCATCGAGGCTTGAACGGGTTGACTGAGTGATGTCAAACACGCGCTGTGTGACC 6532 Query 42956 TCGGCAAGGGTTTC 42969 | || ||| |||| Sbjct 6531 TGGGTGAGGCTTTC 6518 Score = 96.9 bits (106), Expect = 1e-15 Identities = 131/181 (72%), Gaps = 4/181 (2%) Strand=Plus/Minus Query 40168 GCCACCGCCGGTAAGGTCTTTGTTGCTTATAACCTTTCCATTGTCGCCAGGTATCATGTA 40227 ||| |||||| | | ||| || ||||| || ||||| || || ||||| ||||||||||| Sbjct 9193 GCCGCCGCCGATCATGTCCTTATTGCTGATCACCTTGCCGTTATCGCCCGGTATCATGTA 9134 Query 40228 CTGATTGCCATTGCTGGCCTGGAAGATTTCAGG--TAGGTTGTTCTCGCCGACCTGATAC 40285 ||| || || ||||||| ||| ||||||| || || | ||||| ||||| ||| Sbjct 9133 CTGCTTCCCTGTGCTGGCTTGGTAGATTTCCGGCTTACCACCT--TCGCCTACCTGGTAC 9076 Query 40286 ATTGATCCAGCCTGCGCAGGGCCGCCATTCTTTAATGCCCCGGCAACAGACATTGCTTTA 40345 ||||| ||||| | | ||||| || || || ||||| || | || || | | ||| Sbjct 9075 ATTGAGCCAGCAGACACCGGGCCACCGTTTTTGCGAGCCCCTGCGATAGCCAGTCCCTTA 9016 Query 40346 G 40346 | Sbjct 9015 G 9015 >seq497144 Length=1636 Score = 154 bits (170), Expect = 4e-33 Identities = 212/294 (72%), Gaps = 2/294 (1%) Strand=Plus/Plus Query 33176 GAGGAATCAACAAAGTAATCATTTTGGGCACTCTCGGACAAGACCCGGAAGTTAAATATA 33235 |||| | ||||||||||| | | || | ||| || || |||||||||||| || | Sbjct 1117 GAGGCGTAAACAAAGTAATTTTAGTCGGAAATCTGGGGCAGGACCCGGAAGTTCGCTACA 1176 Query 33236 TGCCTTCTGGCGGCGCTGTGTGCAATCTGTCTCTGGCAACATCAGAGCAGTGGAACGATA 33295 |||| |||||| || || ||| | ||||||| || || || ||| ||| Sbjct 1177 TGCCGAATGGCGGTGCCGTTGCCAACATCACTCTGGCTACCTCCGAATCCTGGCGCGA-C 1235 Query 33296 AAGCA-ACAGGGGAAAAGAAAGAGCAGACAGAATGGCATCGCGTGGTTATCTTCGGAAAG 33354 ||||| || || |||| |||||| | || |||||||| ||||| || | ||||| ||| Sbjct 1236 AAGCAGACCGGCGAAACCAAAGAGAAAACTGAATGGCACCGCGTTGTGCTGTTCGGCAAG 1295 Query 33355 CTGGCAGAGGTGGCTGGCGAATACCTGCGCAAAGGCTCTCAGGTGTATGTAGAAGGAAAA 33414 ||||| || ||||| || ||||||||||| |||||||||||||| ||| | ||||| | Sbjct 1296 CTGGCTGAAGTGGCCGGTGAATACCTGCGTAAAGGCTCTCAGGTTTATATCGAAGGCGCA 1355 Query 33415 TTACGTACTCGCAAATGGACAGATCAAAGCGGTGTTGAAAAATACACTACTGAA 33468 | | || || |||||||| || || || ||||| || ||||| || ||| Sbjct 1356 CTGCAGACCCGTAAATGGACTGACCAGGCTGGCGTTGAGAAGTACACCACCGAA 1409 >seq153502 Length=4143 Score = 138 bits (152), Expect = 3e-28 Identities = 196/276 (71%), Gaps = 0/276 (0%) Strand=Plus/Minus Query 33166 ATGGCATCTCGAGGAATCAACAAAGTAATCATTTTGGGCACTCTCGGACAAGACCCGGAA 33225 ||||| ||| || | |||||||| || || | || | | | || ||||| || ||| Sbjct 2266 ATGGCCAGTCGCGGCGTAAACAAAGTGATTCTTGTCGGTAATTTGGGTCAAGATCCAGAA 2207 Query 33226 GTTAAATATATGCCTTCTGGCGGCGCTGTGTGCAATCTGTCTCTGGCAACATCAGAGCAG 33285 || |||||||| ||| || |||||| || | | |||||||| || || Sbjct 2206 GTCCGGTATATGCCAAATGGAGGGGCTGTGACAAACATTACACTGGCAACCTCTGAAAGC 2147 Query 33286 TGGAACGATAAAGCAACAGGGGAAAAGAAAGAGCAGACAGAATGGCATCGCGTGGTTATC 33345 ||| ||||| ||| || ||||| |||||| || |||||||| || || || | Sbjct 2146 TGGCGTGATAAGCAAACCGGTGAAAATAAAGAGATTACTGAATGGCACCGTGTTGTGTTG 2087 Query 33346 TTCGGAAAGCTGGCAGAGGTGGCTGGCGAATACCTGCGCAAAGGCTCTCAGGTGTATGTA 33405 ||||| || | ||||| || ||||||||||| ||||| |||||||||||||| ||| | Sbjct 2086 TTCGGTAAATTAGCAGAAGTTGCTGGCGAATATCTGCGTAAAGGCTCTCAGGTTTATATC 2027 Query 33406 GAAGGAAAATTACGTACTCGCAAATGGACAGATCAA 33441 ||||| || | ||||| ||||||||| ||| ||| Sbjct 2026 GAAGGTCAACTGCGTACGCGCAAATGGCAAGACCAA 1991 >seq2673 Length=777 Score = 111 bits (122), Expect = 5e-20 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 15801 GTTTTATCTTCATCGGATGCAAGGCGGCCAGTTTGCTGACCAAACAGGATGGTGAATGGC 15860 |||||||||||||| |||||||| | || || |||||||||||| | ||||||||||| Sbjct 735 GTTTTATCTTCATCAGATGCAAGCCTTCCCGTCTGCTGACCAAACTGAATGGTGAATGGG 676 Query 15861 TTCTTGATGGATGCTGCAAACTGGTTAGCTGCAATAGTCCACGTTGGCTCTGGGTCGGCT 15920 ||| || ||||| | |||| ||| || |||| |||||| | |||| |||||||||| Sbjct 675 CTCTGAATTGATGCAGAGAACTCGTTGGCGGCAACAGTCCATGATGGCGATGGGTCGGCT 616 Query 15921 G 15921 | Sbjct 615 G 615 >seq226697 Length=878 Score = 91.5 bits (100), Expect = 4e-14 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 33286 TGGAACGATAAAGCAACAGGGGAAAAGAAAGAGCAGACAGAATGGCATCGCGTGGTTATC 33345 ||||| |||||| || || ||||| |||||| | |||||||||||| | | || | Sbjct 873 TGGAAAGATAAAAATACTGGTGAAAATAAAGAGAAAACAGAATGGCATAGAATAGTATTA 814 Query 33346 TTCGGAAAGCTGGCAGAGGTGGCTGGCGAATACCTGCGCAAAGGCTCTCAGGTGTATGTA 33405 || ||||| |||| || | ||||| ||||| || | ||||| ||||| || ||| | Sbjct 813 TTTGGAAAATTGGCTGAAATTGCTGGAGAATATTTGAGAAAAGGTTCTCAAGTATATATT 754 Query 33406 GAAGGAAAATTACGTACTCGCAAATGGACAGATCAAAGCGGTGTTGAAAAATACACTACT 33465 |||||| | | ||| | |||||| ||| |||| ||| ||||| || || || Sbjct 753 GAAGGATCCCTTCAAACTAGAAAATGGCAAGACCAAAATGGTCTTGAACGTTATACAACA 694 Query 33466 GAAAT 33470 ||||| Sbjct 693 GAAAT 689 >seq207983 Length=7775 Score = 89.7 bits (98), Expect = 2e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 4908 ACCGCATTCTCTCTGGCAATCTTGCGACCAATTTCAGCGTCGAAATTCTCTGGACTGGCG 4967 ||||| |||| | || ||||||||||| || || || ||||| ||||| || |||||| Sbjct 7612 ACCGCGTTCTGGCGCGCGATCTTGCGACCGATCTCGGCATCGAAGTTCTCGGGGCTGGCG 7553 Query 4968 CAGGCGCTTTCTCCTGTCACGGTGAAGCCGTTTTTCAGCACCAAGACGCAAAAGGTAAG 5026 ||||| || || || |||||||||||||| ||| |||| ||||| ||||| || Sbjct 7552 CAGGCCGACTCGCCGGTGACGGTGAAGCCGTTGCGCAGGACCAGAACGCAGAAGGTCAG 7494 >seq89870 Length=1429 Score = 89.7 bits (98), Expect = 2e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 40914 GTTTCTCCGCCTCTGCCTGAGCCTTGAGCGCGTTGGCATTATCCCATGCCTTAGCCGCAT 40973 ||||||| || | ||||| || || |||||||| || |||||||| ||| || || | Sbjct 303 GTTTCTCTGCAGCGGCCTGGGCTTTAAGCGCGTTAGCGGTATCCCATTTCTTTGCGGCGT 362 Query 40974 ATTGCCCGGCAAGGTTAATTTGCTCCTGAGTGGCTCCCTTGCCCAGTGATTGCTGAGCA 41032 ||| ||| || | || |||||| | || || || || || |||||||||||||||||| Sbjct 363 ATTCCCCTGCCTGATTGATTTGCGCTTGTGTTGCACCTTTACCCAGTGATTGCTGAGCA 421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151143440509428