Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_021772.1 Length=72394 Score E Sequences producing significant alignments: (Bits) Value seq13560 113 2e-20 seq30178 93.3 2e-14 seq404846 87.8 8e-13 seq287784 87.8 8e-13 seq255299 86.0 3e-12 seq366053 82.4 4e-11 >seq13560 Length=35075 Score = 113 bits (124), Expect = 2e-20 Identities = 191/277 (69%), Gaps = 0/277 (0%) Strand=Plus/Plus Query 12385 TGAACCATTTGAATTGAAACCAGGTGAAACCAAGTTAATTGAAACTGGTTTGGCTATTCA 12444 |||| |||| | | |||| || |||| |||| | | | || || |||||||||| Sbjct 3557 TGAAGCATTCGTACTGAATCCGGGTGCCACCACGCTGGTACCCACCGGCCTGGCTATTCA 3616 Query 12445 TCTGGACGATGTACATGTAGCTGCAATGATTCTTCCTCGTTCAGGTCTAGGCCATAAACA 12504 | | | |||| | | || || |||| | || || || || || ||||||||||| Sbjct 3617 TATCGCCGATCCTGAACTGGCCGCGGTGATCTTGCCGCGCTCTGGCCTTGGCCATAAACA 3676 Query 12505 TGGTGTAGTGCTTGGGAACCTTACTGGTCTGATTGATTCAGATTATCAGGGTGAACTTAT 12564 || || || || || || || ||| |||||||| || ||||||||||| | || || Sbjct 3677 CGGCGTGGTTCTGGGCAATCTGGTTGGCCTGATTGACTCTGATTATCAGGGGCAGCTGAT 3736 Query 12565 GGTAAGCCTCTGGAATCGCTCTACAGAGCCTTTTACTGTTAACCCTGGTGACCGTATTGC 12624 ||| | ||||||| ||| || | |||||| | | ||||| || ||||| || Sbjct 3737 GGTTTCCGTCTGGAACCGCGGGCAGGACTCCTTTACTATCGAGCCTGGCGAACGTATCGC 3796 Query 12625 TCAGATGGTAATCGTGCCTGTAATGCAGCCTGAGTTC 12661 ||||||||| ||||||| || | ||| |||| ||| Sbjct 3797 TCAGATGGTGTTCGTGCCGGTGGTACAGGCTGAATTC 3833 >seq30178 Length=30577 Score = 93.3 bits (102), Expect = 2e-14 Identities = 59/64 (92%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 68244 TGGTGAAATCGGTAGACACAAGGGATTTAAAATCCCTCGGCTTATAGCTGTACGAGTTCG 68303 ||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||| Sbjct 9064 TGGTGAAATCGGTAGACACAAGGGATTTAAAATCCCTCGGCTTATGGCTGTGTGGGTTCA 9005 Query 68304 AGTC 68307 |||| Sbjct 9004 AGTC 9001 >seq404846 Length=244 Score = 87.8 bits (96), Expect = 8e-13 Identities = 61/68 (90%), Gaps = 1/68 (1%) Strand=Plus/Minus Query 68244 TGGTGAAATCGGTAGACACAAGGGATTTAAAATCCCTCGGCT-TATAGCTGTACGAGTTC 68302 |||||||||||||||||||||||||||||||||||||||||| || ||||| || |||| Sbjct 242 TGGTGAAATCGGTAGACACAAGGGATTTAAAATCCCTCGGCTGTAAGGCTGTGCGGGTTC 183 Query 68303 GAGTCTCG 68310 |||| || Sbjct 182 AAGTCCCG 175 >seq287784 Length=1247 Score = 87.8 bits (96), Expect = 8e-13 Identities = 61/68 (90%), Gaps = 1/68 (1%) Strand=Plus/Plus Query 68244 TGGTGAAATCGGTAGACACAAGGGATTTAAAATCCCTCGGCT-TATAGCTGTACGAGTTC 68302 |||||||||||||||||||||||||||||||||||||||||| || ||||| || |||| Sbjct 423 TGGTGAAATCGGTAGACACAAGGGATTTAAAATCCCTCGGCTGTAAGGCTGTGCGGGTTC 482 Query 68303 GAGTCTCG 68310 |||| || Sbjct 483 AAGTCCCG 490 >seq255299 Length=12406 Score = 86.0 bits (94), Expect = 3e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 68162 CCTTAGCTCAGCAGGATAGAGCAGTAGCCTTCTAAGCTATTGGTCACTGGTTCGAATCCA 68221 ||||||||||| |||||||||| ||||||||||| | |||||| ||||||||||| Sbjct 3366 CCTTAGCTCAGTTGGATAGAGCACCGGCCTTCTAAGCCGTAGGTCACAGGTTCGAATCCT 3307 Query 68222 GTAGGGTGTACCAAT 68236 |||||| |||||||| Sbjct 3306 GTAGGGCGTACCAAT 3292 >seq366053 Length=223 Score = 82.4 bits (90), Expect = 4e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 68162 CCTTAGCTCAGCAGGATAGAGCAGTAGCCTTCTAAGCTATTGGTCACTGGTTCGAATCCA 68221 ||||||||||| |||||||||| ||||||||||| | |||||| ||||||||||| Sbjct 151 CCTTAGCTCAGTTGGATAGAGCACCGGCCTTCTAAGCCGTAGGTCACAGGTTCGAATCCT 210 Query 68222 GTAGGGTGTACCA 68234 |||||| |||||| Sbjct 211 GTAGGGCGTACCA 223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230127275717255