Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_022067.1 Length=109960 Score E Sequences producing significant alignments: (Bits) Value seq72351 91.5 1e-13 seq213894 86.0 4e-12 >seq72351 Length=1439 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/186 (72%), Gaps = 3/186 (2%) Strand=Plus/Minus Query 95671 CGGCACGTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAG 95730 ||| | ||| | |||||| || || || | ||||||||||| || ||||| |||||||| Sbjct 995 CGGAATGTTCGCTTTGATCAGACCGGTAATGACATCCACGGATGGACGCTGTGTCGCCAG 936 Query 95731 GACGAGATGAATGCCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGAC 95790 || ||||| |||||||| || || || ||||| || | |||| |||| | || || Sbjct 935 TACCAGATGGATGCCGGCAGCACGGGCTTTCTGTGCCAGGCGGGCAATCAGCTCTTCCAC 876 Query 95791 TTCTTTCTTGTAGCCGCCCATCATGAGGTCTGCCAGCTCGTCGACCACTACCACGATGTA 95850 |||| || | | |||| || ||||| || | ||| ||||||| || || || || Sbjct 875 --CTTT-TTACCGACTGCCATGATCAGGTCAGCAAACTCATCGACCATCACAACAATATA 819 Query 95851 GGGGAG 95856 || || Sbjct 818 AGGCAG 813 >seq213894 Length=28734 Score = 86.0 bits (94), Expect = 4e-12 Identities = 129/183 (70%), Gaps = 3/183 (2%) Strand=Plus/Plus Query 95671 CGGCACGTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAG 95730 ||| | ||| | ||| || ||||| || | ||||| || || || |||||||| ||||| Sbjct 15609 CGGGATGTTAGCTTTAATCAGGCCGGTAATGACATCGACTGACGGACGCTGCGTTGCCAG 15668 Query 95731 GACGAGATGAATGCCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGAC 95790 || || ||||| || ||||| ||||| ||||| || | ||| | || | || || Sbjct 15669 CACCAGGTGAATACCCGCTGCACGCGCTTTCTGCGCCAGGCGAGCGATCAGCTCTTCCAC 15728 Query 95791 TTCTTTCTTGTAGCCGCCCATCATGAGGTCTGCCAGCTCGTCGACCACTACCACGATGTA 95850 | |||| | || ||| || ||||| || | |||||||||| ||||||||||| Sbjct 15729 CTTTTTCCCGA---CGGTCATAATCAGGTCGGCAAATTCGTCGACCATCACCACGATGTA 15785 Query 95851 GGG 95853 || Sbjct 15786 CGG 15788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 349607080009901