Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_022768.1 Length=154701 Score E Sequences producing significant alignments: (Bits) Value seq260686 91.5 1e-13 seq302683 82.4 8e-11 >seq260686 Length=13603 Score = 91.5 bits (100), Expect = 1e-13 Identities = 267/406 (66%), Gaps = 8/406 (2%) Strand=Plus/Plus Query 103240 CTTCCAACACCCATCATGTCCGGCGTTCGTACCCCAACCCGCCAATTCAGTTCTTGTGTT 103299 || || || || || ||||||||||| || ||||| || ||||| ||||| || || || Sbjct 5184 CTGCCGACGCCAATTATGTCCGGCGTGCGCACCCCGACGCGCCAGTTCAGCTCCTGCGTA 5243 Query 103300 CTTATCAAAACCGGTGACACTTTGGACTCGATCAATGCTACAGCCAAAAGTATTGTTGAT 103359 || || | ||| |||| | || || || || || || ||| ||||| | Sbjct 5244 CTGATTGAGTGCGGCGACAGCCTTGATTCCATTAACGCCACCTCCAGCGCGATTGTGAAG 5303 Query 103360 TATGTATCCAAACGCGCTGGGATCGGATTTGATGTCGGAGCAATTCGTGGCATCGGTAGC 103419 || || || | || || || ||||| || | | ||| || |||| | || ||| Sbjct 5304 TACGTTTCTCAGCGTGCCGGTATCGGCATTAACGCCGGTCGCATCCGTGCGCTGGGCAGC 5363 Query 103420 CCTATCCGAAAAGGTGAAATGGTGCACACAGGCCTGGTTCCTTTC-ATAA--AATATCTG 103476 || ||||| |||||| | ||||| ||| |||| ||| |||| | | | | Sbjct 5364 CCGATCCGCGGCGGTGAAGCATTCCACACCGGCTGCATTCCGTTCTATAAGCACTTCCAG 5423 Query 103477 ACTGGGGCATTAAAGTCTTGCTCTCAAGGCGGTATTCGTGGCGGATCAGC-AACTTGCTA 103535 || | || | ||||| |||||||| ||||| | || ||||| |||| | | || | Sbjct 5424 ACCGCGG---TGAAGTCCTGCTCTCAGGGCGGCGTGCGCGGCGGTGCAGCGACCCTGTTC 5480 Query 103536 TATCCCTATCTGGCATTATCAATTTGATGATGTTGTGGTCCTGAAGAACAACCGTGGTCT 103595 || ||| || |||||| || | || | |||| |||||||||||||| || | Sbjct 5481 TA-CCCAATGTGGCATCTGGAAGTGGAAAGCCTGCTGGTGCTGAAGAACAACCGCGGCGT 5539 Query 103596 TGAAGAGAACCGTGAACGCCGTATCGACTATGGTATTCAGATCAAC 103641 ||||| ||||| | || | ||| ||||| || | ||| | ||| Sbjct 5540 TGAAGGCAACCGCGTGCGTCATATGGACTACGGCGTGCAGCTGAAC 5585 >seq302683 Length=202 Score = 82.4 bits (90), Expect = 8e-11 Identities = 145/206 (70%), Gaps = 8/206 (4%) Strand=Plus/Plus Query 73782 AACTCACCAAACCATTGGGACGGCGAGCAGACTGGCAACAAGCACGTGTTCTTCATCCTG 73841 ||||| || |||||||||||||| || ||||||||||||||| |||||||| ||| Sbjct 1 AACTCTCCGAACCATTGGGACGGGGAAGCGACTGGCAACAAGCATTACTTCTTCATGCTG 60 Query 73842 GAAGGT--TGCACCAACCCTGTCGGCACTCGTGGCTTCTACAACGAATATCTGAAGCCGG 73899 || ||| || | | || | ||||| || ||||||||||| || ||| | Sbjct 61 GACGGTGCTGTGC--AGCCGGGTTCTACTCGCGGTTTCTACAACGAGTACCTGCGTAATG 118 Query 73900 AACTTGATAAACACCGCAAGGTTTTTGAA-ATGTTAGGC-GGTAAGATTAAAGTACAGCC 73957 |||| | | | |||||||| || || ||| || | ||| || ||||| ||||| | | Sbjct 119 AACTGGTTGAGCACCGCAAAGTGTTCGAACATCT--GGCTGGCAAGATGAAAGTTCCAGC 176 Query 73958 AAGCACTGAGCAGCTGTCCGGTCTGG 73983 | || ||||| ||| ||| |||| Sbjct 177 ATCAACGGAGCAACTGAGCGGCCTGG 202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 491826799236760