Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_022772.1 Length=156338 Score E Sequences producing significant alignments: (Bits) Value seq260686 89.7 5e-13 seq302683 82.4 8e-11 >seq260686 Length=13603 Score = 89.7 bits (98), Expect = 5e-13 Identities = 269/407 (66%), Gaps = 10/407 (2%) Strand=Plus/Plus Query 104945 CTTCCAACACCCATCATGTCCGGCGTTCGTACCCCAACCCGCCAATTCAGTTCTTGTGTT 105004 || || || || || ||||||||||| || ||||| || ||||| ||||| || || || Sbjct 5184 CTGCCGACGCCAATTATGTCCGGCGTGCGCACCCCGACGCGCCAGTTCAGCTCCTGCGTA 5243 Query 105005 CTTATCAAAACCGGTGACACTTTGGACTCAATCAATGCTACAGCCAAAAGTATTGTTGAT 105064 || || | ||| |||| | || || || || || || ||| ||||| | Sbjct 5244 CTGATTGAGTGCGGCGACAGCCTTGATTCCATTAACGCCACCTCCAGCGCGATTGTGAAG 5303 Query 105065 TATGTATCCAAACGCGCTGGGATCGGATTTGATGTCGGAGCAATTCGTGGCATCGGTAGC 105124 || || || | || || || ||||| || | | ||| || |||| | || ||| Sbjct 5304 TACGTTTCTCAGCGTGCCGGTATCGGCATTAACGCCGGTCGCATCCGTGCGCTGGGCAGC 5363 Query 105125 CCTATCCGAAAAGGTGAAATGGTGCACACAGGTCTG-GTTCCTTTC-ATAA--AATATCT 105180 || ||||| |||||| | ||||| || ||| |||| ||| |||| | | | Sbjct 5364 CCGATCCGCGGCGGTGAAGCATTCCACACCGG-CTGCATTCCGTTCTATAAGCACTTCCA 5422 Query 105181 GACTGGGGCATTAAAGTCTTGCTCTCAAGGCGGTATTCGTGGCGGATCAGC-AACTTGCT 105239 ||| | || | ||||| |||||||| ||||| | || ||||| |||| | | || | Sbjct 5423 GACCGCGG---TGAAGTCCTGCTCTCAGGGCGGCGTGCGCGGCGGTGCAGCGACCCTGTT 5479 Query 105240 ATATCCCTATCTGGCATTATCAATTTGATGATGTTGTGGTCCTGAAGAACAACCGTGGTC 105299 || ||| || |||||| || | || | |||| |||||||||||||| || Sbjct 5480 CTA-CCCAATGTGGCATCTGGAAGTGGAAAGCCTGCTGGTGCTGAAGAACAACCGCGGCG 5538 Query 105300 TTGAAGAGAACCGTGAACGCCGTATCGACTATGGTATTCAGATCAAC 105346 |||||| ||||| | || | ||| ||||| || | ||| | ||| Sbjct 5539 TTGAAGGCAACCGCGTGCGTCATATGGACTACGGCGTGCAGCTGAAC 5585 >seq302683 Length=202 Score = 82.4 bits (90), Expect = 8e-11 Identities = 145/206 (70%), Gaps = 8/206 (4%) Strand=Plus/Plus Query 75535 AACTCACCAAACCATTGGGACGGCGAGCAGACTGGCAACAAGCACGTGTTCTTCATCCTG 75594 ||||| || |||||||||||||| || ||||||||||||||| |||||||| ||| Sbjct 1 AACTCTCCGAACCATTGGGACGGGGAAGCGACTGGCAACAAGCATTACTTCTTCATGCTG 60 Query 75595 GAAGGT--TGCACCAACCCTGTCGGCACTCGTGGCTTCTACAACGAATATCTGAAGCCGG 75652 || ||| || | | || | ||||| || ||||||||||| || ||| | Sbjct 61 GACGGTGCTGTGC--AGCCGGGTTCTACTCGCGGTTTCTACAACGAGTACCTGCGTAATG 118 Query 75653 AACTTGATAAACACCGCAAGGTTTTTGAA-ATGTTAGGC-GGTAAGATTAAAGTACAGCC 75710 |||| | | | |||||||| || || ||| || | ||| || ||||| ||||| | | Sbjct 119 AACTGGTTGAGCACCGCAAAGTGTTCGAACATCT--GGCTGGCAAGATGAAAGTTCCAGC 176 Query 75711 AAGCACTGAGCAGCTGTCCGGTCTGG 75736 | || ||||| ||| ||| |||| Sbjct 177 ATCAACGGAGCAACTGAGCGGCCTGG 202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 497032510245680