Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq248630 127 2e-24 seq189152 127 2e-24 seq141175 113 3e-20 seq58283 113 3e-20 seq220070 98.7 8e-16 seq175940 95.1 9e-15 seq46279 89.7 4e-13 seq46862 87.8 1e-12 >seq248630 Length=92124 Score = 127 bits (140), Expect = 2e-24 Identities = 160/220 (73%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 ||||||||||| || |||||||| || || || || ||||| |||| || || || Sbjct 18286 AGCACCAAATGGAGGGTGGATTCCTTCTGGATATTGTAATCAGCAAGTGTTCGCCCGTCC 18345 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 ||||| || ||||||||| | || | | |||||||| || || || ||||| || ||| Sbjct 18346 TCGAGCTGCTTGCCAGCAAAGATGAGCCGCTGCTGATCTGGTGGGATTCCCTCCTTATCT 18405 Query 29695 TGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTT 29754 |||| |||| |||||| | || | |||||||| || || ||||| || || || Sbjct 18406 TGTATCTTTTCCTTGACATTGTCGATCGTGTCAGATGACTCAACCTCAAGTGTGATGGTC 18465 Query 29755 TTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTAAAAC 29794 |||||||| | | | || | ||| |||||||| | |||| Sbjct 18466 TTGCCAGTGAGGATCTTCATAAAGATCTGCATCTGCAAAC 18505 >seq189152 Length=79535 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 ||||| || | |||||| |||||||||||||| ||||||||||| || | ||| || | Sbjct 36875 CGCAGGACAAGATGAAGAGTGGATTCTTTTTGGATGTTATAATCTGCCAAGGTACGCCCA 36934 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || ||||| || || ||| | || | || |||||||| || ||||| ||||| ||| Sbjct 36935 TCCTCCAGTTGCTTCCCTGCAAAGATAAGCCTCTGCTGATCTGGAGGAATGCCCTCCTTG 36994 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || || ||| | || | ||||| || || || |||||||| || Sbjct 36995 TCCTGGATCTTGGCCTTCACATTATCGATGGTGTCGGAGCTCTCCACCTCAAGAGTGATG 37054 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || ||||| || || ||||| ||||| || Sbjct 37055 GTCTTTCCTGTTAATGTCTTGACAAAAATCTGTAT 37089 Score = 109 bits (120), Expect = 4e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || |||| ||||| || || || || ||||| || ||||| || | ||||| | Sbjct 37331 CGGAGGACCAGGTGAAGGGTAGACTCCTTCTGAATATTGTAATCTGCCAAAGTGCGCTCA 37390 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || ||||| || || |||||| | || | || ||||| || ||||| ||||| ||||| Sbjct 37391 TCCTCGAGCTGCTTTCCAGCAAAGATGAGCCTCTGCTGGTCAGGCGGGATACCTTCTTTA 37450 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || || ||| | || | ||||| || || ||||||||||| || Sbjct 37451 TCCTGGATCTTAGCCTTCACATTATCAATGGTGTCGGAGCTCTCAACTTCAAGAGTGATG 37510 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || |||| || || |||||||||||||| Sbjct 37511 GTCTTTCCGGTTAGTGTCTTGACAAATATCTGCAT 37545 >seq141175 Length=38247 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 |||||||| ||||| ||||| || || || ||||| || || |||| |||||| ||| Sbjct 25910 AGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCTGCAAGGGTGCGGCCATCC 25851 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || || || |||||||| | || | | ||||| ||||| || |||||||| ||||| Sbjct 25850 TCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATACCCTCCTTGTCC 25791 Query 29695 TGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTT 29754 || | || || ||| | || | ||||| || || || || || || || || Sbjct 25790 TGGATCTTGGCCTTCACATTATCAATGGTGTCCGAGGACTCAACCTCGAGGGTGATGGTC 25731 Query 29755 TTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || | ||| || |||||||||||||| Sbjct 25730 TTGCCGGTGAGGGTCTTCACAAATATCTGCAT 25699 >seq58283 Length=114251 Score = 113 bits (124), Expect = 3e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || ||||||| ||||| ||||| || ||||||||||| ||||| |||| || || Sbjct 24807 CGGAGCACCAGGTGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGCAAGAGTACGTTCG 24748 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || ||||| || ||||| | |||||| | | ||| |||||||| || ||||| ||| Sbjct 24747 TCCTCGAGCTGCTTGCCTGTGAATATCAGACGCTACTGGTCCGGCGGGATGCCCTCCTTG 24688 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| ||| || | || ||| | || | ||||| || || || || || || || Sbjct 24687 TCTTG-AATCTTCGCCTTAACATTGTCGATGGTGTCGGAGGACTCCACCTCGAGGGTGAT 24629 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| |||||||| | ||| || | || |||||||| Sbjct 24628 AGTCTTGCCAGTGAGGGTCTTCGCGAAGATCTGCAT 24593 >seq220070 Length=14372 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||||| | || || || | || || ||||| || || || ||||| || || ||| Sbjct 140 CCTCCCCGAAGGCGGAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCA 199 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| | || || || || |||||||| | || | | ||||| ||||| || Sbjct 200 AGGGTCCTGCCGTCCTCCAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGGGGG 259 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| ||||| || | |||| ||||| | || | |||||||| || || Sbjct 260 ATGCCCTCCTTGTCCTGGATTTTTGCCTTGACGTTGTCAATGGTGTCAGACGACTCCACC 319 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || || ||||| || || || || |||||||||||||| Sbjct 320 TCAAGGGTGATGGTCTTGCCTGTCAATGTCTTCACAAATATCTGCAT 366 >seq175940 Length=99262 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| | || ||||||| || || ||||| || || || ||||| || || || Sbjct 58150 CCACCCCTGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCG 58091 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| || || || || || |||||| | || | | ||||| || || || Sbjct 58090 AGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCAAAGATGAGGCGCTGCTGGTCTGGTGGG 58031 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| ||||| || | || || || | || | ||||| || || || Sbjct 58030 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCAATGGTGTCGGATGACTCGACC 57971 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || || ||||| || | ||| ||||||||||||||||| Sbjct 57970 TCAAGCGTGATGGTCTTGCCGGTGAGGGTCTTAACAAATATCTGCAT 57924 >seq46279 Length=115318 Score = 89.7 bits (98), Expect = 4e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| | | ||| ||||||||||| || || |||||||||||||| || || || Sbjct 66867 CCACCCCTGAGCCTCAGGACCAAATGAAGTGTTGACTCTTTTTGAATGTTGTAGTCAGCT 66808 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || ||| || || || || |||||| | || || |||||||| || ||||| Sbjct 66807 AATGTCCGTCCATCTTCCAGCTGCTTTCCAGCAAAAATTAACCTTTGCTGGTCTGGCGGG 66748 Query 29680 ATACCCTCTTTGTCTTG 29696 || || || ||||| || Sbjct 66747 ATGCCTTCCTTGTCCTG 66731 >seq46862 Length=45342 Score = 87.8 bits (96), Expect = 1e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| ||||| | | ||| |||||||| ||||| || ||||| |||||||| ||||| || Sbjct 22793 TCCACCCCTAAGCCTCAGGACCAAATGGAGCGTCGACTCTTTCTGAATGTTGTAATCAGC 22852 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || || ||| || | || || || ||| | || | ||||||||||| || || Sbjct 22853 TAATGTTCGCCCATCTTCCAACTGCTTTCCGGCAAAAATTAGCCTTTGCTGATCTGGAGG 22912 Query 29679 AATACCCTCTTTGTCTTG 29696 ||| ||||| ||||| || Sbjct 22913 AATGCCCTCCTTGTCCTG 22930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 382875427795161