Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_023561.1 Length=173276 Score E Sequences producing significant alignments: (Bits) Value seq79071 179 4e-40 seq1462 178 1e-39 seq65234 152 6e-32 seq161181 123 3e-23 seq462907 105 7e-18 seq15764 96.9 4e-15 seq221073 84.2 2e-11 seq211009 84.2 2e-11 seq286911 82.4 8e-11 >seq79071 Length=852 Score = 179 bits (198), Expect = 4e-40 Identities = 162/201 (81%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 61347 TTAAGTGAAAGTGCGTGAAATAACGTCGCGCTGTTGCTCTGGAGTTAGAGCATTAAAACG 61406 || ||| || || || | ||| ||||||||||| ||||| || || || | |||||||| Sbjct 190 TTCAGTAAAGGTACGGGTAATTACGTCGCGCTGCTGCTCAGGCGTCAGTGAGTTAAAACG 249 Query 61407 AACGGCATAGCCAGAAACACGAATAGTCAGCTGAGGATATTTTTCTGGATGTTGAACTGC 61466 ||||||||||| |||||||| ||||||||||| ||||| ||||| ||||||| |||||| Sbjct 250 CACGGCATAGCCTGAAACACGGATAGTCAGCTGCGGATAGTTTTCAGGATGTTTAACTGC 309 Query 61467 ATCTTCTAAAGTTTCTTTAGACAGCACGTTCACGTTCAAATGCTGTCCACCTTCAAC-TT 61525 |||||| | ||||| | ||| ||||| ||||||| |||||||||||||||||| Sbjct 310 ATCTTCCAGCGTTTCGCGACGCAGAACGTTGACGTTCAGATGCTGTCCACCTTCAACACG 369 Query 61526 TAACTGTAGGCTTGGTTTCAA 61546 || ||| ||| ||| |||||| Sbjct 370 TACCTG-AGGTTTGATTTCAA 389 >seq1462 Length=4781 Score = 178 bits (196), Expect = 1e-39 Identities = 335/493 (68%), Gaps = 0/493 (0%) Strand=Plus/Minus Query 145888 TGGAGAGAACAGAGTGATGTAATCGTCTTTAATCAGACGTTCAAACATCAGGTCGTTGAT 145947 |||| ||| || | ||| | || |||| | |||||||| | |||| || | |||||| Sbjct 1491 TGGACTGAATAGCGAGATATCGCCGCCTTTTACCAGACGTTGATACATGAGTTTGTTGAT 1432 Query 145948 TTGAACACCGTAATCCAAGTGACGAATTCGGTTTTCATCTACGCCTTTGTTGTTCTTGAG 146007 ||| || |||||||| | |||||| | ||||| | || || || ||| || || || Sbjct 1431 TTGTACGCCGTAATCTAGGTGACGGACACGGTTACCTTCAACACCACGGTTATTTTTCAG 1372 Query 146008 TACGAGGAGGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACAATGTCGCCGCGCCACC 146067 || | | | |||||| |||||||||||| || || || ||| |||||| || || || Sbjct 1371 GACTAATAAGCTTTCAATTTCCAAGTGCCACATAGGGTAAAACAGTGTCGCGGCACCCCC 1312 Query 146068 GCGAACTCCACCTTGGGAGCAAGACTTAACTGCTGTTTGGATGTGTTTCCAGAAAGGAAT 146127 ||| || || ||||| |||||||| || || || || |||| |||||| |||| || || Sbjct 1311 GCGTACGCCGCCTTGCGAGCAAGATTTCACGGCCGTCTGGAAGTGTTTGTAGAACGGGAT 1252 Query 146128 AACTCCAGTATGCTTGACTTCTCCGAAGCCGATTTTTGAACCTTCTGCACGAATCATACC 146187 | || ||||| |||| || | |||| ||| |||||||| || Sbjct 1251 ACAACCGGTATGGAAAGCTTCACCACCACGGATTGGGCTGCCTAGCGCACGAATACGGCC 1192 Query 146188 TGCGTTAATGCCGATACCAGCACGTTTAGAGATGTACTCTACAATTGATTCAGCAGATTT 146247 || || || ||||| || || |||| || | ||| | || || | || || Sbjct 1191 AGCATTGATACCGATCCCTGCGCGTTGTGAAACGTATTTAACGATAGCACTAGAAGTGGC 1132 Query 146248 GTTAATTGATTTCAGTGAATCACCAGCTTCAATAACAACGCAAGAACTGAATTGACGAGT 146307 ||| || || | | ||| ||| || |||| ||||| || |||||||| ||||| Sbjct 1131 GTTGATAGAGTCTAAGCTATCGCCACACTCGATAAGCACGCATGAGCTGAATTGGCGAGT 1072 Query 146308 AGGAGTACGAGCACCTGCCATAATAGGAGTAGGCAGAGAAATTTTCTTAGTTGACACAGC 146367 || || || | || ||||| || || ||||| | |||||||| || ||||| || Sbjct 1071 CGGCGTCCGTACCCCAGCCATGATTGGCGTAGGTAAGGAAATTTTAAAGGTCGACACGGC 1012 Query 146368 ATCGTAAAAACGA 146380 ||| ||||| ||| Sbjct 1011 ATCATAAAAGCGA 999 >seq65234 Length=1614 Score = 152 bits (168), Expect = 6e-32 Identities = 303/447 (68%), Gaps = 20/447 (4%) Strand=Plus/Plus Query 145943 TTGATTTGAACACCGTAATCCAAGTGACGAATTCGGTTTTCATCTACGCCTTTGTTGTTC 146002 || ||||| ||| | ||||| | ||||| | || ||||| || | ||| | || || Sbjct 659 TTAATTTGTACAGCATAATCAAGATGACGTACTCTATTTTCTTCAATTCCTCTATTATTT 718 Query 146003 TTGAGTACGAGGAGGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACAATGTCGCCGCG 146062 || | || | | ||||||| ||| | ||||| ||||| || | | || || || Sbjct 719 TTTAAAACTAATAAATTTTCAATTTCTAGATGCCATATTGGGTAAAAAACAGTTGCGGCC 778 Query 146063 CCACCGCGAACTCCACCTTGGGAGCAAGACTTAACTGCTGTTTGGATGTGTTTCCAGAAA 146122 || || | |||||||||||| || ||||| || ||||| |||||| |||||| | ||| Sbjct 779 CCTCCTCTAACTCCACCTTGAGAACAAGATTTTACTGCGCTTTGGAAGTGTTTATAAAAA 838 Query 146123 GGAATAACTCCAGTATGCTTGACTTCTCCGAAGCCGATTTTTGA----ACCTTCT---GC 146175 |||||| ||| ||||| ||||||| |||| ||| || | || || Sbjct 839 GGAATACATCCGGTATGAAATGCTTCTCC-------ATTTCTGATAGGACTTCCTAAAGC 891 Query 146176 ACGAATCATACCTGCGTTAATGCCGATACCAGCACGTTTAGAGATGTACTCTACAATTGA 146235 ||||| ||| ||||||||||| || || || |||| ||| | || | |||||||| Sbjct 892 TCGAATTTGACCAGCGTTAATGCCTATTCCTGCTCGTTGAGAAACATATTTTACAATTG- 950 Query 146236 TTCAGCAGATTT---GTTAATTGATTTCAGTGAATCACCAGCTTCAATAACAACGCAAGA 146292 || || | | ||||| || || | ||| || |||||| | || ||||| Sbjct 951 --CACTAGTTGTAGCATTAATAGAGTTTAAATTATCTGCACATTCAATTAACACACAAGA 1008 Query 146293 ACTGAATTGACGAGTAGGAGTACGAGCACCTGCCATAATAGGAGTAGGCAGAGAAATTTT 146352 ||| ||||||||||| || || | | |||| |||||| || || || ||||| ||||| Sbjct 1009 ACTAAATTGACGAGTTGGTGTTCTTACTCCTGACATAATCGGTGTGGGTAGAGATATTTT 1068 Query 146353 CTTAGTTGACACAGCATCGTAAAAACG 146379 ||| || | |||| ||||| || Sbjct 1069 AAAAGTGGAAATTGCATTATAAAAGCG 1095 >seq161181 Length=1368 Score = 123 bits (136), Expect = 3e-23 Identities = 181/253 (72%), Gaps = 6/253 (2%) Strand=Plus/Minus Query 66845 TAGTTTTCCCATGCATATTCACGGAACCATCCAGATGTAATGCTAGTACAAACTTTTTCC 66904 || || | ||| ||||||||||||||||| ||| ||| ||||||||||||||||| | Sbjct 679 TAATTGTTCCAAGCATATTCACGGAACCAACCACTTGTGATGCTAGTACAAACTTTCATC 620 Query 66905 AAAGC--GTACATAAAT-GAACCGGTAGGGTCCGGGTTGAAATTATTTGGAATTTGATGA 66961 || || || || || | ||| | || | || ||||| | | |||||||| | Sbjct 619 AAGGCAAGTTCAAAACTATAACGTGCAG---CTGGTTTGAAGTCAAACGGAATTTGGCTA 563 Query 66962 CGTTCTAAAGCAAGTACACAAGTTTCTTCATATACACCTGCAAGCTTGAGTTCTTCAGGA 67021 || || | |||||||||||||||||||||||| || || || | |||||| Sbjct 562 CGCTCAAGAGCAAGTACACAAGTTTCTTCATAAACCCCAAACAGACGAATCTCTTCATCT 503 Query 67022 AGAGAATCAAATTTCTCTTTTGAAGTCATTACTTCAGAGCCATCTTTCATGTAAAAAGTA 67081 | || | |||||| ||||| ||||| |||| |||||||||||||| ||||| Sbjct 502 ACAGCAAAAAATTTATCTTTACTGGTCATCACTTGTTCACCATCTTTCATGTAGAAAGTG 443 Query 67082 TAAGCAGGACGAC 67094 || |||||| ||| Sbjct 442 TATGCAGGATGAC 430 >seq462907 Length=336 Score = 105 bits (116), Expect = 7e-18 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 74605 AATTTGGTGACCCCAGCAGGACTCGAACCTGCAACCTAGCGATTATGAGTCGCGTGCTCT 74664 ||| ||||| ||||||| ||||| ||||| || ||| ||||||||||||||||||||||| Sbjct 18 AATCTGGTGGCCCCAGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCGTGCTCT 77 Query 74665 AACCAATTGAGCTATAGGGCC 74685 |||||| |||||||| ||||| Sbjct 78 AACCAACTGAGCTATGGGGCC 98 >seq15764 Length=1899 Score = 96.9 bits (106), Expect = 4e-15 Identities = 146/204 (72%), Gaps = 14/204 (7%) Strand=Plus/Minus Query 143830 ACGATTTCATCAAACACCTTTGCCGGGTCATTCAGCAAGTTACGCATGATGTGCGTATAT 143889 ||||| || ||||||||| |||||| || || | | ||||| |||||||| || || Sbjct 971 ACGATATCGTCAAACACCACTGCCGGATCGTTAACGATATTACGGATGATGTGGGTGTAA 912 Query 143890 GAACGAGAGTGAATCGTTTCGGAGAACGTCCAAGTCTGGTTCCATGTATCAAGTGATGGG 143949 ||||| ||||||||||| || ||||||| ||| || | |||| || || ||| Sbjct 911 GAACGGGAGTGAATCGTCTCTGAGAACGCCCAGGTTTCAATCCAGGTTTCCAGT------ 858 Query 143950 TCAGAAATCAA----AGCGGATAGAACAGC--TGCAGGAGCT-CGGCCTTGAATTGAATC 144002 |||| |||| | ||||| || | || | | ||| ||||| ||||| ||||| Sbjct 857 TCAGGAATCGAGATCAGCGG-CAGCAGCGCGACGTTCGGGCTGCGGCCCTGAATAGAATC 799 Query 144003 CAGAAGACTTTGATATTTCAGGTT 144026 ||| || | |||||||||||||| Sbjct 798 CAGCAGCGTCTGATATTTCAGGTT 775 >seq221073 Length=5188 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 72104 TGGTGCCGGTTAACGGATTCGAACCGCTGACCCTCTCATTACAAATGAGCTGCTCTACCA 72163 ||||||||| || |||| |||||| | ||||| || ||||||| | || |||||||||| Sbjct 1225 TGGTGCCGGCTACCGGAATCGAACTGGTGACCTACTGATTACAAGTCAGTTGCTCTACCA 1284 Query 72164 ACTGAGCTAAACCGGC 72179 |||||||||| ||||| Sbjct 1285 ACTGAGCTAAGCCGGC 1300 >seq211009 Length=1233 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 72104 TGGTGCCGGTTAACGGATTCGAACCGCTGACCCTCTCATTACAAATGAGCTGCTCTACCA 72163 ||||||||| || |||| |||||| | ||||| || ||||||| | || |||||||||| Sbjct 297 TGGTGCCGGCTACCGGAATCGAACTGGTGACCTACTGATTACAAGTCAGTTGCTCTACCA 356 Query 72164 ACTGAGCTAAACCGGC 72179 |||||||||| ||||| Sbjct 357 ACTGAGCTAAGCCGGC 372 >seq286911 Length=6367 Score = 82.4 bits (90), Expect = 8e-11 Identities = 68/82 (83%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 74605 AATTTGGTGACCCCAGCAGGACTCGAACCTGCAACCTAGCGATTATGAGTCGCGTGCTCT 74664 ||||||||| |||| || || | ||||| || ||| |||||||||||||||| |||||| Sbjct 5711 AATTTGGTGGCCCCTGCTGGGTTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCT 5770 Query 74665 AACCAATTGAGCTATAGGGCCA 74686 |||| | ||||||| |||||| Sbjct 5771 AACC-ACTGAGCTAAGGGGCCA 5791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 550895878033760