Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_023568.1 Length=246964 Score E Sequences producing significant alignments: (Bits) Value seq260686 149 1e-30 seq65234 149 1e-30 seq1462 145 1e-29 seq498467 114 2e-20 >seq260686 Length=13603 Score = 149 bits (164), Expect = 1e-30 Identities = 292/425 (69%), Gaps = 10/425 (2%) Strand=Plus/Plus Query 78628 TTCTACAATGCAGTTTCGACTCACAAACTTTCATTACCGACACCGATTATGGCAGGCGTT 78687 |||||| |||| | || || || |||| | ||||| || |||||| | ||||| Sbjct 5151 TTCTACGATGCGATCTCCACCTTTAAGATTTCGCTGCCGACGCCAATTATGTCCGGCGTG 5210 Query 78688 CGTACCCCGACACGCCAGTTTAGTTCGTGTGTTAAGATTGAATCAGGCGACT-CTTTGCA 78746 || |||||||| |||||||| || || || || |||||| | |||||| | ||| | Sbjct 5211 CGCACCCCGACGCGCCAGTTCAGCTCCTGCGTACTGATTGAGTGCGGCGACAGCCTTG-A 5269 Query 78747 TTCAATCAATGAAGTGGCTAAATCAATTGTAAGTTACATTAGTAAGCGTGCAGGTATCGG 78806 ||| || || | | | | ||||| | ||| || | ||||||| |||||||| Sbjct 5270 TTCCATTAACGCCACCTCCAGCGCGATTGTGAAGTACGTTTCTCAGCGTGCCGGTATCGG 5329 Query 78807 TGTTAACGGCGGTGCGATTCGTGCTGAAGGGGCAGTCG--TTCGTTCAGGTGAG--ATTC 78862 |||||| |||| || ||||| |||||| | | || ||||| |||| Sbjct 5330 CATTAACGCCGGTCGCATCCGTGCGCT--GGGCAGCCCGATCCGCGGCGGTGAAGCATTC 5387 Query 78863 GTCACACTGGTGTAATTCCATTCTGGAAACACTTTCAAACTGCGGTTAAATCGTGTTCTC 78922 ||||| || ||||| |||| || ||||| || || ||||| || || || |||| Sbjct 5388 --CACACCGGCTGCATTCCGTTCTATAAGCACTTCCAGACCGCGGTGAAGTCCTGCTCTC 5445 Query 78923 AAGGTGGTGTACGTGGGGGTGCTGCGACTCTAACTTACCCGATTTGGCACTTAGAAGTTG 78982 | || || || || || ||||| ||||| || ||||| || ||||| | ||||| | Sbjct 5446 AGGGCGGCGTGCGCGGCGGTGCAGCGACCCTGTTCTACCCAATGTGGCATCTGGAAGTGG 5505 Query 78983 AAAAACTGTTAGTTCTGAAGAACAACAAAGGTGTTGAAGAAAACCGTATTCGTCATCTTG 79042 ||| ||| | || |||||||||||| || ||||||| ||||| | |||||| | | Sbjct 5506 AAAGCCTGCTGGTGCTGAAGAACAACCGCGGCGTTGAAGGCAACCGCGTGCGTCATATGG 5565 Query 79043 ACTAC 79047 ||||| Sbjct 5566 ACTAC 5570 >seq65234 Length=1614 Score = 149 bits (164), Expect = 1e-30 Identities = 294/426 (69%), Gaps = 12/426 (3%) Strand=Plus/Minus Query 78627 CTTCTACAATGCAGTTTCGACTCACAAACTTTCATTACCGACACCGATTATGGCAGGCGT 78686 ||| || |||||| |||| ||| ||| | || |||| |||||||||||| |||| || Sbjct 1093 CTTTTATAATGCAATTTCCACTTTTAAAATATCTCTACCCACACCGATTATGTCAGGAGT 1034 Query 78687 TCGTACCCCGACACGCCAGTTTAGTTC--GTGTGTTAAGATTGAATCAGGCGACTCTTTG 78744 | || || || || || |||||||| |||||||| ||||||| | || ||| Sbjct 1033 AAGAACACCAACTCGTCAATTTAGTTCTTGTGTGTTA--ATTGAATGTGCAGATAATTTA 976 Query 78745 CATTCAATCAATGAAGTGGCTAAATCAATTGTAAGTTACATTAGTAAGCGTGCAGGTATC 78804 | || || |||| ||| ||||||||| || || | | || ||||| || Sbjct 975 AACTCTATTAATGCTACAACTAGTGCAATTGTAAAATATGTTTCTCAACGAGCAGGAATA 916 Query 78805 GGTGTTAACGGCGGTGCGATTCGTGCTGAAGGGGCAGTCGT-TCGTTCAGGTGAGATTC- 78862 || |||||| ||| ||||| ||| | || |||| | || | | |||| | Sbjct 915 GGCATTAACGCTGGTCAAATTCGAGCTTTA--GGAAGTCCTATCAGAAATG-GAGAAGCA 859 Query 78863 -GTCACACTGG-TGTAATTCCATTCTGGAAACACTTTCAAACTGCGGTTAAATCGTGTTC 78920 ||| || || ||| ||||| || | |||||||| |||| || || ||||| ||||| Sbjct 858 TTTCATACCGGATGT-ATTCCTTTTTATAAACACTTCCAAAGCGCAGTAAAATCTTGTTC 800 Query 78921 TCAAGGTGGTGTACGTGGGGGTGCTGCGACTCTAACTTACCCGATTTGGCACTTAGAAGT 78980 ||||||||| || | || || || || ||| | |||||| || ||||| ||||| | Sbjct 799 TCAAGGTGGAGTTAGAGGAGGGGCCGCAACTGTTTTTTACCCAATATGGCATCTAGAAAT 740 Query 78981 TGAAAAACTGTTAGTTCTGAAGAACAACAAAGGTGTTGAAGAAAACCGTATTCGTCATCT 79040 |||||| | |||||| | || || || | ||| |||||||||| | | |||||||| Sbjct 739 TGAAAATTTATTAGTTTTAAAAAATAATAGAGGAATTGAAGAAAATAGAGTACGTCATCT 680 Query 79041 TGACTA 79046 ||| || Sbjct 679 TGATTA 674 >seq1462 Length=4781 Score = 145 bits (160), Expect = 1e-29 Identities = 328/491 (67%), Gaps = 4/491 (1%) Strand=Plus/Plus Query 78627 CTTCTACAATGCAGTTTCGACTCACAAACTTTCATTACCGACACCGATTATGGCAGGCGT 78686 ||| || |||| || ||||| ||| |||| ||||| || || || ||||| || || Sbjct 1002 CTTTTATGATGCCGTGTCGACCTTTAAAATTTCCTTACCTACGCCAATCATGGCTGGGGT 1061 Query 78687 TCGTACCCCGACACGCCAGTTTAGTTCGTGTGTTAAGATTGAATCAGGCGACTCTTTGCA 78746 || || ||||| ||||| || || || || || || || | ||||| || | Sbjct 1062 ACGGACGCCGACTCGCCAATTCAGCTCATGCGTGCTTATCGAGTGTGGCGATAGCTTAGA 1121 Query 78747 TTCAATCAATGAAGTGGCTAAATCAATTGTAAGTTACATTAGTAAGCGTGCAGGTATCGG 78806 || ||||| | ||| | || || | ||| || | || ||||| ||||| Sbjct 1122 CTCTATCAACGCCACTTCTAGTGCTATCGTTAAATACGTTTCACAACGCGCAGGGATCGG 1181 Query 78807 TGTTAACGGCGGTGCGATTCGTGCTGAAGGGGCAGTCG--TTCGTTCAGGTGAGATTCGT 78864 | | || | || |||||||| ||| ||| | | ||| ||||| | Sbjct 1182 TATCAATGCTGGCCGTATTCGTGCGCTAGG--CAGCCCAATCCGTGGTGGTGAAGCTTTC 1239 Query 78865 CACACTGGTGTAATTCCATTCTGGAAACACTTTCAAACTGCGGTTAAATCGTGTTCTCAA 78924 || || ||| || || |||| |||||||| || || || || ||||| || || ||| Sbjct 1240 CATACCGGTTGTATCCCGTTCTACAAACACTTCCAGACGGCCGTGAAATCTTGCTCGCAA 1299 Query 78925 GGTGGTGTACGTGGGGGTGCTGCGACTCTAACTTACCCGATTTGGCACTTAGAAGTTGAA 78984 || || ||||| |||||||| ||||| || |||||| || |||||||| ||| ||||| Sbjct 1300 GGCGGCGTACGCGGGGGTGCCGCGACACTGTTTTACCCTATGTGGCACTTGGAAATTGAA 1359 Query 78985 AAACTGTTAGTTCTGAAGAACAACAAAGGTGTTGAAGAAAACCGTATTCGTCATCTTGAC 79044 | | ||||| ||||| || ||| |||||||||| |||||| | ||||| || || Sbjct 1360 AGCTTATTAGTCCTGAAAAATAACCGTGGTGTTGAAGGTAACCGTGTCCGTCACCTAGAT 1419 Query 79045 TACAGTGTATCAATCAGTCGATTGATGCTTGAGCGTCTTGTGAATAACGATTACATCACG 79104 ||| | ||| ||||| | | ||| | | ||||| || || || | ||| || Sbjct 1420 TACGGCGTACAAATCAACAAACTCATGTATCAACGTCTGGTAAAAGGCGGCGATATCTCG 1479 Query 79105 CTATTCAGTCC 79115 ||||||||||| Sbjct 1480 CTATTCAGTCC 1490 >seq498467 Length=2746 Score = 114 bits (126), Expect = 2e-20 Identities = 236/350 (67%), Gaps = 1/350 (0%) Strand=Plus/Minus Query 188168 TGGAAAGAACTGACGGGCTACGGTTTCAGTCTGTACAGTACACCAAGTGAATCGCTGTGT 188227 ||||| || ||| | |||||| ||||| |||||||| || || || ||| ||||| Sbjct 808 TGGAAGGAGGAGACCGACTACGGCTTCAGCCTGTACAGCACGCCGAGCGAAAACCTGTGC 749 Query 188228 GATCGTTTCTGTCGTCTCGACCAAGAGAAATACGGTGTCATTACAGGTATCAATGACAAA 188287 || || ||||| || |||||| | ||| || || | | || ||| |||||| Sbjct 748 GACCGCTTCTGCCGCCTCGACGCCGCCGAATTTGGCGTGGTGCCGGGCGTCACCGACAAA 689 Query 188288 GACTATTACACAAACTCGTTTCACTTAGACGTGTTCAAGAAAGTTAACCCATTTGAGAAA 188347 | || ||||| ||| || ||| | ||||| || || ||||| || | || ||| Sbjct 688 GGTTACTACACCAACAGCTTCCACCTCGACGTTGAGAAAAAGGTTAATCCGTACGACAAA 629 Query 188348 ATTGATTTTGAAGCTGCATACCCAATTCATGCAAACGGTGGTTTCATCTGTTATGCTGAG 188407 || || |||||||| | || || || ||||| ||||| ||||| || | ||| Sbjct 628 ATCGACTTTGAAGCGGGCTATCCGCCGATCGCCAACGGCGGTTTTATCTGCTACGGCGAG 569 Query 188408 TTCCCGAATATGCGAGATAACATCAAAGGTCTAGAGCGCGTATGGGATTATGCTTACACT 188467 | ||||||||| | ||||| | || | || ||| ||| |||||||| |||| Sbjct 568 TACCCGAATATCCAGCATAACCTGAAGGCACTGGAGGACGTCTGGGATTACAGCTACAGC 509 Query 188468 AAAGTAGCTTACTTCGGTACGAATACCCCGATTGATCAGTG-TACGTGTG 188516 || | || | ||| || || |||||||||||| | || |||| ||| Sbjct 508 CGCGTGCCCTATTACGGCACCAACACCCCGATTGATGAATGCTACGAGTG 459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785226014151840