Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_023575.1 Length=45550 Score E Sequences producing significant alignments: (Bits) Value seq497144 113 1e-20 seq136258 104 7e-18 seq410746 86.0 2e-12 seq153502 82.4 2e-11 >seq497144 Length=1636 Score = 113 bits (124), Expect = 1e-20 Identities = 140/190 (74%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 30203 TCCGCCAACTTCCCGAAGAACACCACGCGGTGCCATTCGGTGCGCTCCT--GTTGCTGGC 30260 || |||| ||| ||||| | ||| |||||||||||||| || ||| | ||| | || Sbjct 1303 TCAGCCAGCTTGCCGAACAGCACAACGCGGTGCCATTCAGTTTTCTCTTTGGTTTC--GC 1246 Query 30261 CGGTCTGCTTGTCCTTCCAGCTCTCGCTGGTGGCGAGGGTGATGTTGGTCACCGCATTGC 30320 ||||||||||||| |||| ||| ||| || || |||||||||| || ||| || Sbjct 1245 CGGTCTGCTTGTCGCGCCAGGATTCGGAGGTAGCCAGAGTGATGTTGGCAACGGCACCGC 1186 Query 30321 CGTTGGGCATATAGCGAGTTTCCGGGTCACCACCGACGTTGCCAACCAGAATGACTTTGT 30380 | || ||||| |||||| ||||||||| || | || || || | ||| ||||||| Sbjct 1185 CATTCGGCATGTAGCGAACTTCCGGGTCCTGCCCCAGATTTCCGACTAAAATTACTTTGT 1126 Query 30381 TAACGCCTCT 30390 | |||||||| Sbjct 1125 TTACGCCTCT 1116 >seq136258 Length=1331 Score = 104 bits (114), Expect = 7e-18 Identities = 199/291 (68%), Gaps = 2/291 (1%) Strand=Plus/Plus Query 30098 TCTGTTGTGTAGCGGTCCTGACCGTCCTGCGCCTGCCACTTTCGAGTTCTGAGTGAACCC 30157 || || ||||| || ||||| || |||| ||||||| || || || | || || Sbjct 59 TCGGTGGTGTAACGCTCCTGGCCACCCTGATCCTGCCATTTACGGGTGCGCAGCTGGCCT 118 Query 30158 TCGACGTACAGTTGCTGACCCTTCTTT-ACGTGCTGCCCGACGATCTCCGCCAACTTCCC 30216 |||| || | ||| ||||||| ||| | || | || ||| || |||| || || Sbjct 119 TCGATATAGACCTGC-GACCCTTTTTTCAGGTATTCACCCGCGACTTCAGCCAGTTTGCC 177 Query 30217 GAAGAACACCACGCGGTGCCATTCGGTGCGCTCCTGTTGCTGGCCGGTCTGCTTGTCCTT 30276 || | ||||| ||||||||||| ||| ||| | | | |||||||||||||| Sbjct 178 AAACAGAACCACACGGTGCCATTCAGTGATCTCTTTGTTTTCACCGGTCTGCTTGTCGCG 237 Query 30277 CCAGCTCTCGCTGGTGGCGAGGGTGATGTTGGTCACCGCATTGCCGTTGGGCATATAGCG 30336 |||||| || || || || || ||||||| || || || || |||||||| || Sbjct 238 CCAGCTTTCCGACGTAGCCAGCGTAATGTTGGCAACAGCGCCACCATTTGGCATATAACG 297 Query 30337 AGTTTCCGGGTCACCACCGACGTTGCCAACCAGAATGACTTTGTTAACGCC 30387 |||||| || ||| | || || || ||||| |||||||||||||| Sbjct 298 TACTTCCGGATCCTGACCCAGATTCCCGACAAGAATCACTTTGTTAACGCC 348 >seq410746 Length=249 Score = 86.0 bits (94), Expect = 2e-12 Identities = 126/172 (73%), Gaps = 5/172 (3%) Strand=Plus/Minus Query 30152 GAACCCTCGACGTACAGTTGCTGACCCTTCTTTACGTGCTGCCCGACGATCTCCGCCAAC 30211 ||||| || ||||| | ||| |||||| | || || ||| ||||||| | | | Sbjct 204 GAACCTTCCACGTAGACCTGCGAACCCTTGCGCAGGTACTCGCCGGCGATCTCGCCGAGC 145 Query 30212 TTCCCGAAGAACACCACGCGGTGCCATTCGGTGCGCTCCTGTTGCTGGCCGGTCTGCTTG 30271 || |||||||| ||| ||||||||||||||||||||||| | ||| ||| || | Sbjct 144 TTGCCGAAGAAGGTCACCCGGTGCCATTCGGTGCGCTCCTGGGTGTTGCC-GTC-GC-GG 88 Query 30272 TCCTTCCAGCTCTC-GCTGGTGGCGAGGGTGATGTTGGTCACCGCATTGCCG 30322 ||||| | || | | | ||||||| ||| |||| |||||||| || ||||| Sbjct 87 TCCTTGC-GCACGCTGGTGGTGGCCAGGCTGATCTTGGTCACGGCCATGCCG 37 >seq153502 Length=4143 Score = 82.4 bits (90), Expect = 2e-11 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 30203 TCCGCCAACTTCCCGAAGAACACCACGCGGTGCCATTCGGTGCGCTCCTGTTGCTGGCCG 30262 || || || || ||||| ||||| || ||||||||||| || ||| | | | ||| Sbjct 2070 TCTGCTAATTTACCGAACAACACAACACGGTGCCATTCAGTAATCTCTTTATTTTCACCG 2129 Query 30263 GTCTGCTTGTCCTTCCAGCTCTCGCTGGTGGCGAGGGTGATGTTGGTCACCGCATTGCCG 30322 || ||||| || |||||| || ||| || || || ||||| ||||| || || Sbjct 2130 GTTTGCTTATCACGCCAGCTTTCAGAGGTTGCCAGTGTAATGTTTGTCACAGCCCCTCCA 2189 Query 30323 TTGGGCATATAGCGAGTTTCCGGGTCACCACCGACGTTGCCAACCAGAATGACTTTGTTA 30382 || |||||||| || ||| || || ||| | || || || ||||| |||||||| Sbjct 2190 TTTGGCATATACCGGACTTCTGGATCTTGACCCAAATTACCGACAAGAATCACTTTGTTT 2249 Query 30383 ACGCC 30387 ||||| Sbjct 2250 ACGCC 2254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144775019246224