Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_023588.1 Length=33525 Score E Sequences producing significant alignments: (Bits) Value seq248802 475 7e-130 seq283191 125 2e-24 seq407565 111 3e-20 seq440707 96.9 7e-16 seq2689 89.7 1e-13 >seq248802 Length=12257 Score = 475 bits (526), Expect = 7e-130 Identities = 1138/1688 (67%), Gaps = 66/1688 (4%) Strand=Plus/Plus Query 15877 TACCACCACGGCGTACGCGTCATCGAAATCAACGGCGGCGTGCGTCCGATCCGCACTGTG 15936 || |||||||||||||||||| | |||||||| | ||| || || ||| || Sbjct 2081 TATCACCACGGCGTACGCGTCGTTGAAATCAATGACGGAACCCGCAGTATTTCCACGGTA 2140 Query 15937 GCCACCGCTATCGTCGGCGTCGTCTGCACCGCGCAGGACGCAGACGCCACGCTGTTCCCC 15996 ||||| |||| |||||| | |||||||| || ||| || || ||||| | ||||| Sbjct 2141 TCCACCTCTATTGTCGGCATGGTCTGCACTGCAGCGGATGCTGATGCCACCGTATTCCCG 2200 Query 15997 CTCGACCGACCGGTGCTGCTGACCGACGTGCTGGGCGCCGTCGGCAAGGCCGGCACCAGC 16056 ||| || ||||||||| | |||||||||| || || || || || ||||| |||| Sbjct 2201 CTCAACACGCCGGTGCTGATTACCGACGTGCAGGCGGCGGTGGGGAAAGCCGGTGTCAGC 2260 Query 16057 GGCACGCTGCGCGCCA-CGCTGCAGGCCATTGCCGACCAGGCCAACGCCATTACCGTGGT 16115 ||||||||| ||| | |||||||||| |||||||||||| ||| | | || ||||| Sbjct 2261 GGCACGCTG-GCGAAAGCGCTGCAGGCGATTGCCGACCAGAGCAAGCCGGTAACGGTGGT 2319 Query 16116 GGTGCGCGTCACCGAAGGTTCCGACGACAGCGCCA-CCACCGCCAACGTGATCGGCAAGA 16174 ||||||||| || ||| ||||| |||| || ||||| ||| | |||||| | Sbjct 2320 GGTGCGCGTTGAGGAGGGTGAAGACGA-AGCGGCAACCACCAGCAATATCATCGGCGGCA 2378 Query 16175 AGGACGG---CGCCACCTTCACCGGCATGCAGGCGCTGCTGGTGGCTGAGGCGCAGGTAG 16231 || | || | || |||||| ||| | |||||||| | ||| || | | | | Sbjct 2379 GCGATGCTAACGGCCGCTACACCGGGATGAAAGCGCTGCTCGCGGCGCAGACCGACCTTG 2438 Query 16232 GCGTGCGTCCGCGCATCCTCGGCGCACCCGGTCTGGACACCCAGCCGGTTTCGGCCGCAC 16291 |||| ||||| || ||||||| || || ||||| | | | || | |||| | Sbjct 2439 GCGTTAAGCCGCGTATTCTCGGCGTGCCGGGGCTGGATTCGCTGGAAGTGGCCACCGCGC 2498 Query 16292 TGGCGGTCATCGCCAAGAAGCTGCGCGCGATGGCCTACGTGAGCTGTGC---CGCCAGTG 16348 |||||| ||| | || |||||||||| | | ||| | || || || | || Sbjct 2499 TGGCGGCAATCTGCCAGCAGCTGCGCGCCTTCGGCTATAT---CTCGGCTTACGGCTGTA 2555 Query 16349 CCTCGGTCAGCGAGGCCATCGCCTATCGCGAGCAGTTCAGCCAGCGCGAGCTGATGCTGA 16408 |||| ||||| || || |||||||| | ||||||||||||||||||||| ||| Sbjct 2556 AAACGGTAAGCGATGCGCTCAAGTATCGCGAAAACTTCAGCCAGCGCGAGCTGATGGTGA 2615 Query 16409 TCTATCCCGACTTCGTCGCGTTCAACACTGCCGACGCCACCAC--CAGCATG-GCGTTCG 16465 ||| |||||||| ||||| | ||||| | ||| || | | | | | || | | Sbjct 2616 TCTGGCCCGACTTTGTCGCCTGGAACACCGT-GAC--CAGCGCGGCGGAAACTGCCTATG 2672 Query 16466 CGACCGCCCGCGCCCTGGGCCTGCGCGCGATGATCGATGAGCAGCAG-GGCTGGCACAAA 16524 | |||||||||||||| ||||||||||| | |||||| | | ||| |||||||| ||| Sbjct 2673 CCACCGCCCGCGCCCTCGGCCTGCGCGCCAAAATCGATAACGA-CAGCGGCTGGCATAAA 2731 Query 16525 TCGATCTCCAATGTGGCCGTCGCCGGCGTGACCGGCAT--CAGCCGCGACGTGCACTGGG 16582 | | || || || | |||| ||||||||||||| | | ||| || || ||||| Sbjct 2732 ACCCTGTCGAACGTCGGCGTCAACGGCGTGACCGGCGTTTCCGCCTCG--GTATTCTGGG 2789 Query 16583 ACCTGCAAGATCCGGCGACCGACGCTGGCCTGCTGAACGCCGCCGACATCACCACCCTCA 16642 ||||||| | || |||||| || | |||||||| | ||| | ||||||| || | Sbjct 2790 ACCTGCAGCAGGTGGGGACCGATGCCGATCTGCTGAATGAAGCCAGCGTCACCACGCTGA 2849 Query 16643 TCAACTCCAACGGTTACAAGTTCTGGGGTTCGCGGACCTGCAGCGACGACCCGCTGTTCG 16702 || | |||||| | |||||||| || ||||| ||||| ||||||||||||| Sbjct 2850 TCCGCAAAGACGGTTTCCGCTTCTGGGGCAACCGCACCTGTAGCGATGACCCGCTGTTCG 2909 Query 16703 CCTTCGAGACGGCCACGCGCACCGCGCAGATCCTGGCCGACACCATTGCCGAGGCGCAGA 16762 |||| || | ||| ||| | |||||| | | ||||||||||| ||||| ||||| | Sbjct 2910 CCTTTGAAAACTTCACCCGCTCGGCGCAGGTGATCGCCGACACCATGGCCGATGCGCATA 2969 Query 16763 TGGTGTACATCGACAAGCCCGAGCATCCGTCGCTCATCCGCGACATGCTGGAGAGCATCA 16822 || | || ||||||||| | ||| |||| | |||||||| | | | |||| Sbjct 2970 TGTGGGCCAACGACAAGCCGCTGACGCCGACGCTGGTGCGCGACATTATCGCCGGGATCA 3029 Query 16823 ATGCCAAGTTCCGCGAGCTGGTGAACGCCGGCTACGTGGCTGGTGC--ATCGCT-GTACG 16879 | ||||||||||| |||||| | |||||||| || || || || | ||| ||||| Sbjct 3030 ACGCCAAGTTCCGTGAGCTGATCAACGCCGGTTATCTGCTGGGCGCCAACTGCTGGTACG 3089 Query 16880 ACGAGCG-GCCAACGAGCCCAGCCAG-CTG-AGGCTGG---GGTGACAATCGACTACGAC 16933 |||| | |||||| |||| | || ||| | || || | || |||||||||||| Sbjct 3090 ACGAAAGCGCCAAC-AGCCAGGAGAGCCTGAAAGCCGGCAAGCTGTATATCGACTACGAC 3148 Query 16934 TACACGCCGGTACGCCCGCTGGAGAACCTGGTCCTGAACCAGCGCATCACCGACCGCTAC 16993 || || ||||| | |||||||| | ||| |||| |||||||| |||||| ||||| Sbjct 3149 TATACCCCGGTGCCGCCGCTGGAAGATCTGACCCTGCGTCAGCGCATTACCGACAGCTAC 3208 Query 16994 TTCGCCGACTTC-CCGGCCGTATCAACGGCTGATGCCGTACTGAGGAACCATTCCCATGT 17052 | || ||||| ||| | | ||| || || ||| |||| | |||| Sbjct 3209 CTGGCGAACTTCGCCGCTTCTGTGAACAGC--------TAAGGAGAAACC---CTCATGG 3257 Query 17053 CCATGCCCAGCAAGCTCAAGAATCTCAACCTGTTCAACGACGGCCTCAGCTACCTGGGCC 17112 | |||| | || || || | || || |||| ||||| | | |||||| | ||| Sbjct 3258 CACTGCCTAAGAAACTGAAATACCTGAATTTGTTTAACGATGCCAACAGCTATCAGGGTG 3317 Query 17113 AGGTCACCGAGGTCAAGCTGCCGACCTTGACCCGCAAGATGGAGGAATACCGCGCCGGCG 17172 ||| ||| | | |||||||| || | |||||| | || ||||||| ||||| Sbjct 3318 TGGTGACCTCACTGACGCTGCCGAAGCTGGCGCGCAAGCTCGACCCTTACCGCGGCGGCG 3377 Query 17173 GCATGCTCGG------TCCCATCGATATTGACCTCGGCCAAGAGAAAATCGAACTGGAAT 17226 ||||| ||| | ||||||| || ||| | | || | || ||||| | Sbjct 3378 GCATGAACGGCGTGGCGCATATCGATAATGGCCTGGAAGATGATGCGCTGGATCTGGAGT 3437 Query 17227 GGAAGTGTGGCGGACT-GATGCGCGACGTGCTGCGCCAGTACGGCGCCATCGCCCACAAC 17285 ||| ||| || || | || ||||||| |||||| || | |||| || Sbjct 3438 GGACCATCTCCGGCCTCGACGACCG-CGTGCTGAGCCAGTGGGGTG---GCGCC----AC 3489 Query 17286 GCCGTGCAGCTGCGATTCGCTGGCGCCTATCAGCGCGAAGACAGCGCAGACGTGGACTCG 17345 | |||| |||||| || || |||| ||||| || |||| || || | || Sbjct 3490 G--GTGCCGCTGCGCTTTATGGGTTCCTACCAGCGTGACGACACCGACGAGACCATCGCG 3547 Query 17346 GTCGAGATCGTCATCCGCGGCCGTCA-CAGCGAGATCGACGCCGGCACCGGCAAGGTCGG 17404 || ||| | | | |||||| || |||| || ||||| |||| ||||| || Sbjct 3548 GTGGAGGTGGAGCTGCGCGGCAAGCATCAGC-AGTTCGACTTCGGCGAGAGCAAGCAGGG 3606 Query 17405 TGACGACACCGAGTTCAGCGTGAAGACCACCGCCAGCTACTACAAGCTGAGCATCAATGG 17464 ||| || | ||| || | | |||| || |||||||||||||||| || || Sbjct 3607 TGAGGAGAACGAAACCAAAATCACCACCAAATGCACCTACTACAAGCTGAGCTGGAACGG 3666 Query 17465 CCGTACCGAGATTGAAATCGACATGGTCGGCATGGTGTTCATCGTCAACGGCGTGGACCA 17524 | | |||||| ||||||| ||| |||||| ||||| |||||| | |||| Sbjct 3667 CAAAGCGCTGATTGAGATCGACACCGTCAACATGGTCGAGATCGTGAACGGCATCGACCG 3726 Query 17525 GCTGGCCG 17532 ||||||| Sbjct 3727 CCTGGCCG 3734 >seq283191 Length=2555 Score = 125 bits (138), Expect = 2e-24 Identities = 135/177 (76%), Gaps = 4/177 (2%) Strand=Plus/Minus Query 30582 CGACCATTCTGTACCGGTGGTGAGAGCGGCCGTGAAACCAAAAAAGAAGAGCTAATTTTA 30641 |||||| | | |||| ||| | ||| |||||||||||||| || | ||||||||| Sbjct 974 CGACCACCCCCTGCCGGCGGTCAAAGCAGCCGTGAAACCAAAGAAAGACTGCTAATTTTC 915 Query 30642 CCGGCAA-TTTTACCGGTGGATGCAAAAAGGCCAGCGCACCGCGCTGGCCTTTTTCGTTG 30700 ||| || |||| || || || ||||||||||||||||| |||||| |||| ||||||| Sbjct 914 CCGATAAATTTTCCCAGTAGAAGCAAAAAGGCCAGCGCAGTGCGCTGACCTTCTTCGTTG 855 Query 30701 ATAGCCCTATTTTCAAGGGCTTTCGGTGCTTCCCGAGTGGTGCCGCTTATCCGAATC 30757 | | ||| ||||||| |||||| | |||| ||||| ||||||||||||| Sbjct 854 AAACGCCTGAATTCAAGGCGTTTCGGCGATTCCTCTGTGGT---GCTTATCCGAATC 801 >seq407565 Length=246 Score = 111 bits (122), Expect = 3e-20 Identities = 91/111 (82%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 2537 GTAGTCCAGCGCCAGCTGCGAGAACGCCTCGCGGCCCAGCAGCCGGTGCGGTCGGAACGT 2596 ||| |||||||| | |||||||||||| |||| ||||||| || ||||| || || Sbjct 82 GTAATCCAGCGCTAACTGCGAGAACGCGGTGCGGTCCAGCAGTCGATGCGGCGCAAAGGT 141 Query 2597 GCGCACCAGCATGTTGCGTTTGAATGTCAGGCCGCTGTGCAGGTACGGGTT 2647 |||||||||||||||||| ||||| ||||||| ||||||||| |||| || Sbjct 142 GCGCACCAGCATGTTGCGCTTGAAGATCAGGCCACTGTGCAGGAACGGATT 192 >seq440707 Length=283 Score = 96.9 bits (106), Expect = 7e-16 Identities = 189/284 (67%), Gaps = 2/284 (1%) Strand=Plus/Plus Query 2338 TTTCCTGATCCGCGTCCGCCTCGCGCAGCTGGAACACCTCACCAGCGGGAAACTCATGCT 2397 |||||||||| | |||| |||| || ||||| || ||| | | ||| ||||||| Sbjct 1 TTTCCTGATCGGGGTCCACCTCACGTAGCTGATGTACAGAACCGGGCGCAAATTCATGCT 60 Query 2398 CTACCCGTCCGGCNNNNNNNNNNNNNNNNNNNNNGGGCTGCACGCCACGGCGCACGTACT 2457 | |||| | |||| ||| |||||||||||||||| ||||| Sbjct 61 CAACCCTTTCGGCTCGCACCTGAAAGAACTCAGAGGGTTGCACGCCACGGCGCATGTACT 120 Query 2458 GCGCCAGCGGCACCGCAAGACTGTGCGCGGC-TCCTGACATAGCGCGGCGACGCTCGACA 2516 |||||| | | ||| ||| ||| ||| || | | | | ||||| | Sbjct 121 GCGCCATGAGAGGCTGAAG-CTGCAGCAGGCGTCCGGAGTGCGAGAGTTGCCGCTCCAGG 179 Query 2517 TACCCCATGCCGAAGGTGGTGTAGTCCAGCGCCAGCTGCGAGAACGCCTCGCGGCCCAGC 2576 ||| |||||||||| ||| |||||||||| |||||| ||||| ||| ||||| Sbjct 180 TACGCCATGCCGAACACCAGGTAATCCAGCGCCAACTGCGAAAACGCGGTGCGATCCAGC 239 Query 2577 AGCCGGTGCGGTCGGAACGTGCGCACCAGCATGTTGCGTTTGAA 2620 || || || || || |||||||||||||||||||| ||||| Sbjct 240 AGGCGATGTGGCACAAATGTGCGCACCAGCATGTTGCGCTTGAA 283 >seq2689 Length=852 Score = 89.7 bits (98), Expect = 1e-13 Identities = 51/52 (98%), Gaps = 0/52 (0%) Strand=Plus/Minus Query 30738 TGGTGCCGCTTATCCGAATCGAACGGATGACCTACTGTTTACAAGATAGTTG 30789 |||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 90 TGGTGCCGCTTATCCGAATCGAACGGATGACCTACTGTTTACAAGACAGTTG 39 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 106523138282174