Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_023610.1 Length=218339 Score E Sequences producing significant alignments: (Bits) Value seq495623 269 4e-67 seq155894 230 3e-55 seq206465 212 9e-50 seq67594 132 7e-26 seq279251 114 2e-20 seq494847 87.8 2e-12 seq63939 84.2 3e-11 >seq495623 Length=1190 Score = 269 bits (298), Expect = 4e-67 Identities = 431/611 (71%), Gaps = 12/611 (2%) Strand=Plus/Plus Query 87330 CTGACAGAGCTCAGAGCGCACGCAGTCATCCTTCGTGAACTCTACAACCCCAATGCGGGA 87389 ||||||||||| ||| ||||||||||| || || ||| || || | | | Sbjct 84 CTGACAGAGCTGAGAACGCACGCAGTCCTCTTTTCCGAAACGGACCACGCTCAC-CATCT 142 Query 87390 CGTGGTACTGAAA-CGCTGTAGCGCGTCGGAAAGTCCACTTTGGACCCCTCTCGGTAAAT 87448 ||| || ||| || ||| |||||||| | || || || || |||||||| Sbjct 143 CGTCGTCCTGGAAGCGCGACAGCGCGTCAGCCAGGCCGGACTGAACATGGGACGGTAAAT 202 Query 87449 CACACTGAGCCACGTCTCCGTTAACAATCACGGTCACGTTCTCACCCAGACGTGTCAGGA 87508 ||||||| | | || ||||||||||| ||||||||||| || || || || ||||||| Sbjct 203 CACACTGGGTGATATCGCCGTTAACAATGACGGTCACGTTTTCCCCAAGGCGCGTCAGGA 262 Query 87509 ACATTTTCATCTGTGCCTTGGTTACGTTCTGGGCTTCGTCCAGGATAACTACCGCGTTCT 87568 |||| ||||| || || ||| |||||||| || || ||||| || || || ||||| | Sbjct 263 ACATCTTCATTTGGGCGGCGGTGACGTTCTGCGCCTCATCCAGAATCACCACGGCGTTTT 322 Query 87569 CAAACGTGCGGCCACGCATATACGCGAAGGGAGCAATTTCCACCTTCTTCACATCCGGGC 87628 ||||||||||||| |||||||| || || || || |||||||| || | || || | Sbjct 323 CAAACGTGCGGCCTCGCATATAGGCAAACGGCGCGATTTCCACTTTGCCAATTTCGGGAC 382 Query 87629 GCAAGCAGTACTGAAGGAACGTACCACCAAGGCGTTTCTCCAGGATGTCTTGAACCGGGC 87688 ||| ||||||||| | || | | ||||| ||||| |||| | ||| | ||||| | Sbjct 383 GCAGGCAGTACTGCATAAAGGAAGAGCCAAGACGTTTAACCAGAACGTCATATACCGGCC 442 Query 87689 GGAAATACGGGGCGAATTTCTCGCTGATGTCCCCAGGCAAGAAGCCCAGGTTCTCACCGG 87748 ||||||||||||||||||| || ||| ||||| || | ||| |||| | |||| | | Sbjct 443 GGAAATACGGGGCGAATTTTTCTGAGATATCCCCTGGAAGGAATCCCAAATCCTCATCCG 502 Query 87749 ACTCTAAGACAGGACGCGTCACGATGATGCGCTCCACCTCTTTATCCAGCAATGCTTTGG 87808 || | || || || ||||| || || | || || || |||| | || || | || Sbjct 503 CCTGAAGTACCGGGCGAGTCACTATAATCCTGTCAACATCCTTATGAATCAGGGCCTCGG 562 Query 87809 CCGC--GTGCGCAGTTGA--CAGGAATGTTTTACCACAACCGGCTTCACCCGTTGCAAAG 87864 |||| |||| | ||| ||| |||||||||||||| ||||| ||||| || ||| Sbjct 563 CCGCTTTTGCGGCGCTGATCCAG----GTTTTACCACAACCTGCTTCGCCCGTAGCGAAG 618 Query 87865 ATTAATTGCTTCGTGTTCAGCTGC-TCGAGGTAAAGTACCTGGTTTTCATTGCGCGCTTC 87923 || | |||||| || ||| || | ||| || | |||| |||||| | ||||| Sbjct 619 ATCAGTTGCTTGGT-TTCTATGGCGTTGAGATAGTGCGCCTGAGCTTCATTTCTGGCTTC 677 Query 87924 GATGGGTGTAT 87934 || |||| || Sbjct 678 AATCGGTGAAT 688 >seq155894 Length=1395 Score = 230 bits (254), Expect = 3e-55 Identities = 379/542 (70%), Gaps = 10/542 (2%) Strand=Plus/Plus Query 87330 CTGACAGAGCTCAGAGCGCACGCAGTCATCCTTCGTGAACTCTACAACCCCAATGCGGGA 87389 |||||| ||| |||| ||||| || || || || ||| ||||| |||| | Sbjct 102 CTGACACAGCGCAGAACGCACACAATCTTCTTTGCCGAAGCGTACAATGCCAAC-CATCT 160 Query 87390 CGTGGTACT-GAAACGCTGTAGCGCGTCGGAAAGTCCACTTTGGACCCCTCTCGGTAAAT 87448 ||| | | ||||||| |||||||| | || || | ||||| || || | Sbjct 161 CGTCCTCTTCGAAACGCGCCAGCGCGTCTGCGAGACCGGAAGGCACCCCAGCGGGCAAGT 220 Query 87449 CACACTGAGCCACGTCTCCGTTAACAATCACGGTCACGTTCTCACCCAGACGTGTCAGGA 87508 | ||||| | | || ||||||||||| || || || || || ||||| || ||||||| Sbjct 221 CGCACTGGGTAATATCGCCGTTAACAATGACCGTGACATTTTCGCCCAGTCGGGTCAGGA 280 Query 87509 ACATTTTCATCTGTGCCTTGGTTACGTTCTGGGCTTCGTCCAGGATAACTACCGCGTTCT 87568 ||||||||||||| || ||| |||||||| || |||||||| || || || || || | Sbjct 281 ACATTTTCATCTGCGCGGCGGTGACGTTCTGCGCCTCGTCCAGAATTACCACAGCATTTT 340 Query 87569 CAAACGTGCGGCCACGCATATACGCGAAGGGAGCAATTTCCACCTTCTTCACATCCGGGC 87628 | || ||||| ||||||||||| ||||| || ||||| || ||||| | ||||| | Sbjct 341 CGAAGGTGCGACCACGCATATAGGCGAACGGTGCAATCTCTACCTTGGCAATTTCCGGAC 400 Query 87629 GCAAGCAGTACTGAAGGAACGTACCACCAAGGCGTTTCTCCAGGATGTCTTGAACCGGGC 87688 ||| || || || | || | | ||||| ||||| |||| ||||| | |||||||| Sbjct 401 GCAGACAATATTGCATAAAGGATGCGCCAAGACGTTTAACCAGAATGTCATAAACCGGGC 460 Query 87689 GGAAATACGGGGCGAATTTCTCGCTGATGTCCCCAGGCAAGAAGCCCAGGTTCTCACCGG 87748 ||||||| || ||||||||||| || || || || | ||| ||||| | |||| | | Sbjct 461 GGAAATAAGGCGCGAATTTCTCAGAAATATCGCCGGGAAGGAATCCCAGATCCTCATCTG 520 Query 87749 ACTCTAAGACAGGACGCGTCACGATGATGCGCTCCACCTCTTTATCCAGCAATGCTTTGG 87808 || | || || ||||| ||||| || | || | || |||| | || || | | Sbjct 521 CCTGCAGTACCGGGCGCGTAACGATAATCCTGTCGATATCCTTATTAATCAGGGCCTCAG 580 Query 87809 CCGC--GTGCGCAGTTGA--CAGGAATGTTTTACCACAACCGGCTTCACCCGTTGCAAAG 87864 |||| |||| ||| ||| |||||||| || ||||||||||| ||||| ||| Sbjct 581 CCGCTTTTGCGGCACTGATCCAG----GTTTTACCGCACCCGGCTTCACCGGTTGCGAAG 636 Query 87865 AT 87866 || Sbjct 637 AT 638 >seq206465 Length=5074 Score = 212 bits (234), Expect = 9e-50 Identities = 333/473 (70%), Gaps = 4/473 (1%) Strand=Plus/Plus Query 87400 AAACGCTGTAGCGCGTCGGAAAGTCCACTTTGGACCCCTCTCGGTAAATCACACTGAGCC 87459 |||||||| | ||| || | ||| || || || ||| |||| ||||| || | Sbjct 758 AAACGCTGCATCGCATCAGCAAGCCCGGATTTAACACCTGCTGGTAGGTCACATTGGGTA 817 Query 87460 ACGTCTCCGTTAACAATCACGGTCACGTTCTCACCCAGACGTGTCAGGAACATTTTCATC 87519 | || |||||||| ||||||||||| ||||| || | || || |||||||||||||| Sbjct 818 ATATCACCGTTAACGATCACGGTCACATTCTCCCCTAAGCGAGTGAGGAACATTTTCATT 877 Query 87520 TGTGCCTTGGTTACGTTCTGGGCTTCGTCCAGGATAACTACCGCGTTCTCAAACGTGCGG 87579 |||| ||| |||||||| ||||| || || ||||| | || |||||||| || | | Sbjct 878 TGTGAGGCGGTAACGTTCTGCGCTTCATCAAGAATAACGAAAGCATTCTCAAAGGTTCTG 937 Query 87580 CCACGCATATACGCGAAGGGAGCAATTTCCACCTTCTTCACATCCGGGCGCAAGCAGTAC 87639 || |||||||| ||||| || |||||||| || ||| | || ||||| || ||||| Sbjct 938 CCCCGCATATAAGCGAAAGGTGCAATTTCAACTTTCGCAATTTCAGGGCGTAAACAGTAG 997 Query 87640 TGAAGGAA--CGTACCACCAAGGCGTTTCTCCAGGATGTCTTGAACCGGGCGGAAATACG 87697 || | || | ||| |||| |||||| | | | ||| | ||||||||||| || | Sbjct 998 TGCATAAAAGAGGACC-CCAA-GCGTTTAACTAATACGTCATAGACCGGGCGGAAGTAAG 1055 Query 87698 GGGCGAATTTCTCGCTGATGTCCCCAGGCAAGAAGCCCAGGTTCTCACCGGACTCTAAGA 87757 | || ||||| || ||||| ||||| | ||| |||| || ||| ||| | ||| | Sbjct 1056 GAGCAAATTTTTCAGAAATGTCGCCAGGGAGGAAACCCAAGTCTTCATCGGCTTGTAACA 1115 Query 87758 CAGGACGCGTCACGATGATGCGCTCCACCTCTTTATCCAGCAATGCTTTGGCCGCGTGCG 87817 | || || ||||| ||||| ||||| | ||||| | | || |||| || || | | Sbjct 1116 CTGGGCGAGTCACAATGATCCGCTCAATATCTTTGTTAATTAAGGCTTCTGCGGCTTTAG 1175 Query 87818 CAGTTGACAGGAATGTTTTACCACAACCGGCTTCACCCGTTGCAAAGATTAAT 87870 | || | | ||||||||||| || ||||| || || || || || ||| Sbjct 1176 CGGTACTGATCCAAGTTTTACCACACCCCGCTTCGCCTGTAGCGAAAATCAAT 1228 >seq67594 Length=1251 Score = 132 bits (146), Expect = 7e-26 Identities = 201/286 (70%), Gaps = 0/286 (0%) Strand=Plus/Plus Query 93443 TGCTGGATACCCTTGACTCGAAGATTGACCAGTGGTACGCCAGTGGTTGTACTGGCGATG 93502 ||||||| || || || | || || ||||||||||||||| | || | |||||| Sbjct 459 TGCTGGACACACTCGATTGTAAAATCGACCAGTGGTACGCCTCACGCTGCAGCGGCGATC 518 Query 93503 TCATCAAAGGGTATTGGTCGGGGCGTGCCGCGGGCGTATGGGACCACATGACGGCGGTGG 93562 | || |||| | ||||| || | |||| ||||| |||| || || | | Sbjct 519 TGATTAAAGCGGGCTGGTCAGGACAAAAGCAGGGCAACTGGGATCACAGTACTGCTATTG 578 Query 93563 AGCTGAGTAACTTTAACGTCCAGAACTGTCGGGGCGGAAAGGTACTGAACTTGCCGCGTT 93622 ||||| |||||||||| ||| | || || || || || || || ||| ||||||| | Sbjct 579 AGCTGTCAAACTTTAACGCGCAGCATTGCCGCGGTGGTAAAGTGCTTAACCTGCCGCGCT 638 Query 93623 GCACGCAATCCTTCATCTGGAACGGCTGGATTGAGCACAGTGACAACCCAGGCGACCTGT 93682 | | || || ||||| || ||||||||||||||| |||| ||||| ||||| | | Sbjct 639 GTGCTCAGTCGATCATCCATAATGGCTGGATTGAGCACTGTGATAACCCTGGCGATATCT 698 Query 93683 CGAACGGCCAGTGGATTATCAACGGACTGAACATCGAAGACTGTAA 93728 | ||||||||||||||| || | | || | ||| || || ||||| Sbjct 699 CCAACGGCCAGTGGATTGTCGATGCGCTCAGCATTGAGGATTGTAA 744 >seq279251 Length=8576 Score = 114 bits (126), Expect = 2e-20 Identities = 199/287 (69%), Gaps = 2/287 (1%) Strand=Plus/Plus Query 93443 TGCTGGATACCCTTGACTCGAAGATTGACCAGTGGTACGCCAGTGGTTGTACTGGCGATG 93502 || |||| ||||| |||| || |||||||||||||| || | || | || || | Sbjct 1536 TGATGGACACCCTCGACTGTAAAATTGACCAGTGGTATGCGCTGCGCTGCAGCGGTGACG 1595 Query 93503 TCATCAAAGGGTATTGGTCGGGGCGTGCCGC-GGGCGTATGGGACCACATGACGGCGGTG 93561 | |||||| |||||| || ||||| |||| |||||||||| || || | Sbjct 1596 TAATCAAATCCGTCTGGTCGAA-CGCGCCGCAGGGCAAGTGGGACCACAGCACCGCCATC 1654 Query 93562 GAGCTGAGTAACTTTAACGTCCAGAACTGTCGGGGCGGAAAGGTACTGAACTTGCCGCGT 93621 |||||| ||||||||||| ||| |||| | || || || || ||| ||| ||| Sbjct 1655 GAGCTGTCTAACTTTAACGCGCAGTACTGCACCGAAGGGAAAGTCCTTAACCTGCAGCGC 1714 Query 93622 TGCACGCAATCCTTCATCTGGAACGGCTGGATTGAGCACAGTGACAACCCAGGCGACCTG 93681 ||| || || | ||| ||||||||||| ||||| | || ||| |||||| | Sbjct 1715 TGCGGTCAGTCGCTGATCCACAACGGCTGGATCGAGCATACCGAATTCCCCGGCGACATC 1774 Query 93682 TCGAACGGCCAGTGGATTATCAACGGACTGAACATCGAAGACTGTAA 93728 || |||||||| ||||||||| | | |||| | | ||| |||||| Sbjct 1775 TCCAACGGCCAATGGATTATCGATGCCCTGAGCCTGGAAACCTGTAA 1821 >seq494847 Length=1062 Score = 87.8 bits (96), Expect = 2e-12 Identities = 122/169 (72%), Gaps = 4/169 (2%) Strand=Plus/Plus Query 92156 GCCCACTCGTTCCAGATGGTAACCCCTTCTTTGGC--CAACTCTCGGTTGTCCGTGGAAC 92213 |||||||||| |||||| | || |||| ||| | || | | ||| ||| || Sbjct 513 GCCCACTCGTCCCAGATCG--ACACCTTATTTTCCTTCAGGTAGGCGATGTTAGTGTCAC 570 Query 92214 CCTGCATGAACCAGAGCATCTCGTGAATGATGCTGCGCAAGTGAACTTTCTTGGTGGTGA 92273 | | | |||||| |||| ||| |||||||| |||||| || ||||||||||||| Sbjct 571 CGTTAAGGAACCACAGCAGCTCATGAATGATAGAGCGCAAATGGCACTTCTTGGTGGTGA 630 Query 92274 CTAGCGGAAACCCGTCCGCGAGGTTAAAGCGCATTTGGTGACCAAAGAT 92322 | |||||||| |||||| || || || ||||| || |||||||| || Sbjct 631 CCAGCGGAAAACCGTCCTGCAGATTGAAACGCATCTGATGACCAAAAAT 679 >seq63939 Length=2243 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 92222 AACCAGAGCATCTCGTGAATGATGCTGCGCAAGTGAACTTTCTTGGTGGTGACTAGCGGA 92281 ||||| |||| ||| ||||| || ||| | ||| ||||||||||||||| |||||| Sbjct 2084 AACCACAGCAGCTCATGAATAATCGAGCGGATATGACATTTCTTGGTGGTGACCAGCGGA 2025 Query 92282 AACCCGTCCGCGAGGTTAAAGCGCATTTGGTGACCAAAGAT 92322 || || ||| ||||| || ||||| ||||||||||| || Sbjct 2024 AAACCATCCTGCAGGTTGAAACGCATCTGGTGACCAAAAAT 1984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694197622196840