Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq234489 122 6e-22 seq217758 122 6e-22 seq158632 122 6e-22 seq152054 113 3e-19 seq293223 104 2e-16 seq287177 104 2e-16 seq259404 93.3 3e-13 seq205139 93.3 3e-13 seq73823 87.8 1e-11 seq236987 86.0 5e-11 >seq234489 Length=93356 Score = 122 bits (134), Expect = 6e-22 Identities = 165/229 (72%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 282251 CCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGT 282310 || ||||||| | | || | ||||||| ||| |||||||| | ||||| || || Sbjct 49819 CCCTCTTCAATGGTGAGGAGGGAAACATCAAAGGTGCCACCACCAAGGTCAAAGATGAGA 49760 Query 282311 ACATTCATTTCTTTGTCT----TGG--TTTTTATCAAGACCATACGCAAAAGCAGCAGCA 282364 |||||| | || | ||| || || ||||||||||| |||| |||||||||| Sbjct 49759 ACATTCTTCTCACCAACACTGGTGGCCTTCTTGTCAAGACCATAAGCAATAGCAGCAGCA 49700 Query 282365 GTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTG 282424 ||||| || || ||||| | || |||||| || || ||||| ||| ||||| || ||| Sbjct 49699 GTTGGCTCGTTGATAATGCGCATAACATTCAGGCCTGCAATCACTCCAGCATCCTTGGTG 49640 Query 282425 GCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473 || || || || || || || || || ||||| ||||| | ||| |||| Sbjct 49639 GCCTGCCTCTGAGAGTCATTGAAGTAGGCAGGGACAGTGACAACAGCAT 49591 >seq217758 Length=51541 Score = 122 bits (134), Expect = 6e-22 Identities = 305/462 (66%), Gaps = 6/462 (1%) Strand=Plus/Plus Query 282018 AATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 282077 |||||| ||| ||||| | ||||||| || || || ||||| | | ||||| || | Sbjct 26504 AATCAACTCCCTCGAAGAGTGAATCAATCTCGATGGTGGTTTGGGCAGTGGAAGAAAGGG 26563 Query 282078 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCA 282137 | || || | ||||||| ||||| || || | || | | | | | | | Sbjct 26564 TCCTCTTCGCCCTCTCACATGAAGTCCTGAGCCTCCTCAAAGACCTGGGGTTTCCACTGA 26623 Query 282138 AATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAA 282197 ||| | || | || |||||||| |||| ||| | | || | ||| || |||| Sbjct 26624 TATCCTTCTTGTGCTTCCTCTTGAACTCTTGGACAAAGTGGTTCACCATACGGTTGTCAA 26683 Query 282198 AATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTT 282257 | || || || || | | ||| | || | || || | || | |||| || || | Sbjct 26684 AGTCCTCCCCACCAAGGTGAGTGTCACCAGCTGTGGCCTTGACCTCAAAAATACCCTCCT 26743 Query 282258 CAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCA 282317 ||| | | |||| |||||| || |||||||| | ||||| ||||| || ||| Sbjct 26744 CAATGGTAAGGAGAGAGACATCAAAAGTGCCACCACCGAGGTCAAAGATAAGCACGTTCT 26803 Query 282318 TTTCTTTGTCT-TGGT-----TTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTT 282371 | || | | |||| | || ||||||||||| |||| ||||| || ||||| | Sbjct 26804 TCTCACCGACACTGGTAGCCTTCTTGTCAAGACCATAGGCAATTGCAGCTGCTGTTGGCT 26863 Query 282372 CATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTC 282431 | || || || | || ||||||||||||||||| || ||||| || || || || | Sbjct 26864 CGTTGATGATACGCATCACATTAAGACCAGCAATAACACCAGCATCCTTGGTTGCCTGCC 26923 Query 282432 TTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473 | || ||||| || || || ||||| ||||| | |||||||| Sbjct 26924 TCTGGGAATCATTGAAGTAAGCAGGCACAGTGACAACGGCAT 26965 >seq158632 Length=4132 Score = 122 bits (134), Expect = 6e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 282334 TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATT 282393 |||||| | |||||| || | || ||||| || ||||| ||||||||||| || | Sbjct 4027 TTTATCTAAACCATAAGCTAGTGCTGCAGCTGTAGGTTCGTTAATAATTCTTTTGACTTC 3968 Query 282394 AAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 282453 | || |||||||| || |||||||| || |||||||| || | ||| |||||||| || Sbjct 3967 TAATCCTGCAATTCTACCAGCATCTTTGGTTGCTTGTCTCTGAGCATCATTAAAATAGGC 3908 Query 282454 AGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTT 282513 ||||| |||||||| || ||| | ||| || ||| | || | ||| |||| ||| Sbjct 3907 GGGAACTGTAATAACTGCTTCTTTCACTGATTCTCCTAAGTAGTCTTCTGCAGTTTTTTT 3848 Query 282514 CATTTTACTTAAAATCATTGATGAAATTTG 282543 |||||| |||| | || |||||||| Sbjct 3847 CATTTTTTTTAACACTTCTGCAGAAATTTG 3818 Score = 109 bits (120), Expect = 4e-18 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 86114 CTAAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAAC 86173 ||||||| || || || ||||| || || ||||| ||||| ||| | || ||||| | Sbjct 4022 CTAAACCATAAGCTAGTGCTGCAGCTGTAGGTTCGTTAATAATTCTTTTGACTTCTAATC 3963 Query 86174 CCGCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTA 86233 | |||||| || ||| ||| |||||||||||||| || ||||||||||| || || | Sbjct 3962 CTGCAATTCTACCAGCATCTTTGGTTGCTTGTCTCTGAGCATCATTAAAATAGGCGGGAA 3903 Query 86234 CAGTAATAACTGCTT 86248 | ||||||||||||| Sbjct 3902 CTGTAATAACTGCTT 3888 >seq152054 Length=931 Score = 113 bits (124), Expect = 3e-19 Identities = 106/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 282334 TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATT 282393 |||||| | |||||| |||| || ||||| || ||||| ||||||||||| || | Sbjct 136 TTTATCTAAACCATAAGCAAGCGCTGCAGCTGTAGGTTCGTTAATAATTCTTTTGACTTC 77 Query 282394 AAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 282453 | || |||||||| || ||||| ||||| |||||||| || | ||| |||||||| || Sbjct 76 TAATCCTGCAATTCTACCAGCATCCTTAGTTGCTTGTCTCTGAGCATCATTAAAATAGGC 17 Query 282454 AGGAACAGTAATAAC 282468 |||||| |||||||| Sbjct 16 AGGAACTGTAATAAC 2 Score = 111 bits (122), Expect = 1e-18 Identities = 103/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 86114 CTAAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAAC 86173 ||||||| || ||||| ||||| || || ||||| ||||| ||| | || ||||| | Sbjct 131 CTAAACCATAAGCAAGCGCTGCAGCTGTAGGTTCGTTAATAATTCTTTTGACTTCTAATC 72 Query 86174 CCGCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTA 86233 | |||||| || ||| ||| ||||||||||||||| || ||||||||||| || || | Sbjct 71 CTGCAATTCTACCAGCATCCTTAGTTGCTTGTCTCTGAGCATCATTAAAATAGGCAGGAA 12 Query 86234 CAGTAATAACT 86244 | ||||||||| Sbjct 11 CTGTAATAACT 1 >seq293223 Length=445 Score = 104 bits (114), Expect = 2e-16 Identities = 76/88 (86%), Gaps = 3/88 (3%) Strand=Plus/Minus Query 637112 CAAAGAAAATTATTGTCG---ATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTG 637168 |||| |||| |||||| | |||||||||||||||| ||||| |||||||||||| ||| Sbjct 137 CAAAAAAAAATATTGTAGTAGATTATTCTTCTCCAAACATTGCAAAAGAAATGCATGTTG 78 Query 637169 GACATTTAAGATCAACTATTATTGGTGA 637196 ||||||||||||||||||| || || || Sbjct 77 GACATTTAAGATCAACTATAATAGGAGA 50 >seq287177 Length=89695 Score = 104 bits (114), Expect = 2e-16 Identities = 197/289 (68%), Gaps = 6/289 (2%) Strand=Plus/Plus Query 282191 TTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGT 282250 || ||||| || ||||| || | | ||| | || | || ||| | || | ||| | Sbjct 32690 TTGTCAAAGTCCTCACCACCAAGATGAGTGTCACCAGCTGTGGCTTTAACCTCGAAGATA 32749 Query 282251 CCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGT 282310 || || |||| | | ||||| |||||| ||| ||||| || | |||||| || || Sbjct 32750 CCCTCCTCAATGGTGAGAAGAGAGACATCAAAGGTACCACCTCCAAGATCAAAGATGAGG 32809 Query 282311 ACATTCATTTCTTTGTCT-TGG-----TTTTTATCAAGACCATACGCAAAAGCAGCAGCA 282364 |||||| | || | ||| || || ||||||||||| |||| |||||||| Sbjct 32810 ACATTCTTCTCACCAACACTGGAAGCCTTCTTGTCAAGACCATAAGCAATGGCAGCAGCT 32869 Query 282365 GTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTG 282424 ||||| || || || || | | ||||| | |||||||| || ||||| || || Sbjct 32870 GTTGGCTCGTTGATGATACGAAGGACATTGATGCCAGCAATGACACCAGCATCCTTGGTA 32929 Query 282425 GCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473 || || || || || || || || |||||||| ||||| | ||| |||| Sbjct 32930 GCCTGCCTCTGCGAGTCATTGAAGTATGCAGGTACAGTGACAACAGCAT 32978 >seq259404 Length=617 Score = 93.3 bits (102), Expect = 3e-13 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 432291 AAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTGCACGTACA 432350 || || || ||| || | || || |||||||| |||||||||||| | ||||||||||| Sbjct 184 AAGGAGGGACGTCTTCGTGGTAACTTGATGGGCAAGCGTGTCGATTTTTCTGCACGTACT 125 Query 432351 GTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCTC 432399 || || || ||| ||||| | ||||| |||||||||||||||||| Sbjct 124 GTCATCACAGGTGACCCTAACTTGTCTCTCGATGAAGTTGGTGTTCCTC 76 >seq205139 Length=106759 Score = 93.3 bits (102), Expect = 3e-13 Identities = 194/288 (67%), Gaps = 6/288 (2%) Strand=Plus/Plus Query 282190 ATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG 282249 ||| ||||| || ||||| || | | ||| | || | || ||| | || | || | Sbjct 88167 ATTGTCAAAGTCCTCACCACCAAGATGAGTGTCACCAGCTGTGGCTTTAACCTCAAAGAT 88226 Query 282250 TCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAG 282309 || || |||| | | ||||| |||||| ||| ||||| || | ||||| || || Sbjct 88227 GCCCTCCTCAATGGTGAGAAGAGAGACATCAAAGGTACCACCTCCAAGGTCAAAGATGAG 88286 Query 282310 TACATTCATTTCTTTGTCT-TGG-----TTTTTATCAAGACCATACGCAAAAGCAGCAGC 282363 || ||| | || | ||| || || ||||||||||| |||| |||||||| Sbjct 88287 GACGTTCTTCTCACCAACACTGGAAGCCTTCTTGTCAAGACCATAAGCAATGGCAGCAGC 88346 Query 282364 AGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGT 282423 ||||| ||||| || || | | ||||| | |||||||| || ||||| || || Sbjct 88347 TGTTGGCTCATTGATGATACGGAGGACATTGATGCCAGCAATGACACCAGCATCCTTGGT 88406 Query 282424 GGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 282471 || || || || || || || || |||||||| ||||| | ||| || Sbjct 88407 AGCCTGCCTCTGCGAGTCATTGAAGTATGCAGGTACAGTGACAACAGC 88454 >seq73823 Length=2501 Score = 87.8 bits (96), Expect = 1e-11 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 |||||||| | || || ||||||||||| || || || | | ||| | | || || Sbjct 790 CCATACGCCAGCGCTGCGGCAGTTGGTTCGTTGATGATACGCTTAACTTCTAACCCTGCG 731 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 || | || ||||||||||| ||||| | ||| | |||||| || ||||| || ||||| Sbjct 730 ATACGGCCAGCATCTTTAGTTGCTTGACGTTGCGCATCGTTGAAGTATGCCGGTACAGTG 671 Query 282464 ATAACGGCATCTGTTACT 282481 |||||||| || || ||| Sbjct 670 ATAACGGCTTCAGTCACT 653 >seq236987 Length=98127 Score = 86.0 bits (94), Expect = 5e-11 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 282355 AGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGC 282414 ||||||||||||||||||||| || || || |||| ||| |||||||| | || || Sbjct 66998 AGCAGCAGCAGTTGGTTCATTGATGATCCTTTGGACATCAAGCCCAGCAATACGGCCAGC 67057 Query 282415 ATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 282471 ||| || ||||| || || || | ||| || || || || ||||| ||||| || || Sbjct 67058 ATCCTTGGTGGCCTGCCTCTGAGCATCATTGAAGTAAGCTGGAACGGTAATGACAGC 67114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3716120758607946