Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_023688.1 Length=222006 Score E Sequences producing significant alignments: (Bits) Value seq1462 165 1e-35 seq498467 159 5e-34 seq260686 105 9e-18 seq129507 87.8 3e-12 >seq1462 Length=4781 Score = 165 bits (182), Expect = 1e-35 Identities = 311/454 (69%), Gaps = 4/454 (1%) Strand=Plus/Minus Query 32761 GGACTAAACAGCGTGATATAATCATCGTTTTTCAGACGTTCCCAGAACATTTTATTGATT 32820 ||||| || |||| ||||| | | ||| |||||||| | | | ||| |||||| Sbjct 1490 GGACTGAATAGCGAGATATCGCCGCCTTTTACCAGACGTTGATACATGAGTTTGTTGATT 1431 Query 32821 TGGATACCGTAGTCCAAGTGTCTGATTCGATTTTCTTCCACACCCTTGTTGTTCTTGAGC 32880 || | ||||| || | ||| | || || || |||| ||||| ||| || || || Sbjct 1430 TGTACGCCGTAATCTAGGTGACGGACACGGTTACCTTCAACACCACGGTTATTTTTCAGG 1371 Query 32881 ACAAGGATTTTTTCAACTTCAAGATGCCACATCGGATAATACAGAGTAGCAGCGCCACCA 32940 || | | |||||| ||| | |||||||| || ||| |||| || || || || || Sbjct 1370 ACTAATAAGCTTTCAATTTCCAAGTGCCACATAGGGTAAAACAGTGTCGCGGCACCCCCG 1311 Query 32941 CGTACACCGCCCTGTGAGCAGCTTTTTACCGCAGTCTGAAAGTATTTCCAGAATGGGATA 33000 ||||| ||||| || ||||| ||| || || ||||| |||| ||| |||| |||||| Sbjct 1310 CGTACGCCGCCTTGCGAGCAAGATTTCACGGCCGTCTGGAAGTGTTTGTAGAACGGGATA 1251 Query 33001 ATACCAGTATGACGAACCTCGCCAGAACGAATTCTAGAGCCTTCAGCACGAATAGCACCA 33060 ||| ||||| | | || ||| ||| ||| |||| ||||||||| ||| Sbjct 1250 CAACCGGTATGGAAAGCTTCACCACCACGGATTGGGCTGCCTAGCGCACGAATACGGCCA 1191 Query 33061 CCATTGATACCGATACCAGCTCTCTTGCTGATA--TAGTCAACGATAGAACTAGCGGTTG 33118 ||||||||||||| || || | ||| ||| | || | |||||||| ||||| || | Sbjct 1190 GCATTGATACCGATCCCTGCGC-GTTG-TGAAACGTATTTAACGATAGCACTAGAAGTGG 1133 Query 33119 CGTTAATGCTATCGAGTTCATCACCACTTTCAATCTTGACGCATGAGCTAAACTGACGGG 33178 |||| || || | ||| |||| || || ||||||||||| || || || | Sbjct 1132 CGTTGATAGAGTCTAAGCTATCGCCACACTCGATAAGCACGCATGAGCTGAATTGGCGAG 1073 Query 33179 TCGGAGTACGAACACCAGCCAGAATAGGAGTCGG 33212 |||| || || || ||||||| || || || || Sbjct 1072 TCGGCGTCCGTACCCCAGCCATGATTGGCGTAGG 1039 Score = 109 bits (120), Expect = 8e-19 Identities = 147/202 (73%), Gaps = 6/202 (3%) Strand=Plus/Minus Query 30744 AGCAATGTCAACCATTTCCGAGTCATCATCGCCGTTCTGCCAAGCACGAATGAG---ATA 30800 |||||| || |||||||| ||||| || ||| | || |||| || | || || Sbjct 3583 AGCAATCTCTTTCATTTCCGGATCATCTTCACCGCTTCGC--AGCA-GATTTAGCATATG 3527 Query 30801 CTGAGTCCCTTTCAAGTGCAATTGTTCGTCGCGAGCGATCAAGCGCATGATCTTGGCGTT 30860 ||| || || ||| ||||| |||||| || ||||| | || ||||||||||| || Sbjct 3526 CTGTGTTCCCGTCAGGTGCAGGGCTTCGTCCCGTGCGATAAGACGGATGATCTTGGCATT 3467 Query 30861 ACCTTCCATCAAACCACGCTCACCAAATGAGAATGTGCAAGCAAAGCTAACATAGAAACG 30920 ||||||||||| ||||||| | || | ||||| ||||||||||| || |||||||| Sbjct 3466 ACCTTCCATCAGCTCACGCTCGGCGAACGCGAATGAACAAGCAAAGCTCACGTAGAAACG 3407 Query 30921 CATTGCCTCAAGAGCGTTTACG 30942 || || || || || || ||| Sbjct 3406 AATGGCTTCGAGGGCATTGACG 3385 >seq498467 Length=2746 Score = 159 bits (176), Expect = 5e-34 Identities = 540/828 (65%), Gaps = 21/828 (3%) Strand=Plus/Plus Query 28212 GAAACTACGGCATCCCATTGGGAATTTGAAACTACCAGTCACTTCAACGATCTTATCATA 28271 ||| || ||||| |||||||| ||| || ||| || || | || | || ||||| Sbjct 1238 GAAGCTGCGGCAGCCCATTGGCGTTTTAAACGAACCGGTGACCTGCACCACCTGGTCATA 1297 Query 28272 GCTCAGAATGTCCGGATACATACGTTTCGCAGCGCATTCCAGAGCCAACTGTTTGATACG 28331 | || || || || ||||| ||||| ||||| ||||| |||| |||||||||| Sbjct 1298 ATTGAGGATATCGGGGTACATGCGTTTACTGGCGCACTCCAGCGCCAGCTGTTTGATATC 1357 Query 28332 ATACAGCGGATCAGTCG----GGTTCAAGTTGTGTCCGTCTTTCAGAGCGAATACCAGTT 28387 || || || | || ||| ||| | ||| |||| | ||||| ||||| | Sbjct 1358 GTAATTTGGCTC-GCCGCGACGGTG---GTTCAGCCCGGCTTTGATGGCGAACACCAGCT 1413 Query 28388 TCGGGAAAACAGGGGTGATACCCTCTTTACCAAGACCAGCCAAACGAACTTTCAGGATTG 28447 | || || || | || | | |||||| || || || | || |||||| | Sbjct 1414 TGGGAAACACGGCAGTTTTGTGATTTTTACCCAGCCCGGCGATGCGGTTACGCAGGATCG 1473 Query 28448 CTTCTTGAATCAGTTCTGACTCCCAGCTAGTACCAAGACCAAAGCCGAAGGT-ACAGAAC 28506 | || || || | ||||||| || || || || ||||||||||| ||| ||| Sbjct 1474 ACTGCTGGATAAGGCGCGCTGCCCAGCTGGTGCCGAGGCCGAAGCCGAAGGTGACA-AAC 1532 Query 28507 GGAGTTTGACCATTTGCGGAGTGCAGAGTGTTGACCTCATACTCCAGACCTTGCATAGCA 28566 || || || || || |||| |||||| || ||||||||||||||||| || | || Sbjct 1533 GGCGTCTGGCCGTTGGCGGTGTGCAGCGTATTGACCTCATACTCCAGCGACTGAAAGGCG 1592 Query 28567 TCATAT-ACAGCTTTGCGAGTCTTTGCAATAGCATATTGCTGTTGA-TCTGGAATTTTCC 28624 || || || ||| || || || ||||| ||| | || | ||| | || Sbjct 1593 TCGTAGCACTCTTTTTCG-GTGCGCGCGCGGGCATAG-GCTTCGGCGTCGGCAATCTGCC 1650 Query 28625 AGTAACGAGCTTCATCCAAGTGCTTTTCGTG--TGTCATTTTAACATACGGTGCCAGCAC 28682 | | || | ||| ||| | | || ||| || |||| |||||||| Sbjct 1651 ATTCGTCGGCGGTGGCGCGGTGTTTTGCCAGGCTGGCATCC--ACGAACGGCGCCAGCAC 1708 Query 28683 TTCGTCAATGCGATTGATTGTGTTACCGCCATAAATGTGACTTGCTACTTGAGCGATGAT 28742 ||| ||||| || || || ||| | || || ||||| || || || || || |||||||| Sbjct 1709 TTCATCAATACGGTTAATGGTGGTGCCCCCGTAAATATGGCTGGCGACCTGGGCGATGAT 1768 Query 28743 TTGAGCAATCACGGCAGCAGCGGTAGAAATGCTTTTCGGAGTCTCGATTTGAGCATTACC 28802 || || | ||||| | ||||| || || || || | ||||| | || ||||| Sbjct 1769 CTGCGCGGTGACGGCGGTGGCGGTGGAGATCGACTTAGGCGGTTCGATCTCGGCGTTACC 1828 Query 28803 CATTCTGAAACCACGTTTCAACATTCCTTCAACATCTATCAACATGCAGTTAAACATTGG 28862 |||| |||| || | ||| ||| || | || |||| ||||||||||||||| || Sbjct 1829 CATTTTGAAGCCGTGCGTCAGCATGCCCCGCAGGTCGATCAGCATGCAGTTAAACATCGG 1888 Query 28863 GAAGAACGGTGAATAATCAAGATCGTGGAAGTGAATCCAACCATTTTCGTGTGCTTGCAT 28922 ||| ||||| || || || |||||||| |||| ||| || || || || | Sbjct 1889 GAAAAACGGCGAGTAGTCGAGATCGTGATAGTGGATCTCGCCGCGCTCATGGGCGCTGAC 1948 Query 28923 AACTTCAACAGGCAGATAATGCT---TGGCGAAATGCTTACTAACGATACCAGCTACCAA 28979 || ||| ||||| ||||| |||| | || || ||||| || || | || Sbjct 1949 CACATCACGCGGCAGCATATGCTGACGGGCGTAGTGTTTGGCGACGATCCCGGCCAGCAG 2008 Query 28980 ATCGCGTTGAGTTGGAATTACCTTGGCGTCTTTGTTTGCATTTTCATT 29027 |||||| ||||| || || |||||| || || || ||||||||||| Sbjct 2009 ATCGCGCTGAGTGGGGATCACCTTGCTATCCTTATTGGCATTTTCATT 2056 >seq260686 Length=13603 Score = 105 bits (116), Expect = 9e-18 Identities = 262/395 (66%), Gaps = 12/395 (3%) Strand=Plus/Minus Query 32827 CCGTAGTCCAAGTGTCTGATTCGATTTTCTTCCACACCCTTGTTGTTCTTGAGCACAAGG 32886 |||||||||| || | | || || |||| || || ||||||||| ||||| || Sbjct 5572 CCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCCGCGGTTGTTCTTCAGCACCAGC 5513 Query 32887 ATTTTTTCAACTTCAAGATGCCACATCGGATAATACAGAGTAGCAGCGCCACCACGTACA 32946 | |||| ||||| ||||||||||| || || |||| || || || || || || || Sbjct 5512 AGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAGGGTCGCTGCACCGCCGCGCACG 5453 Query 32947 CCGCCCTGTGAGCAGCTTTTTACCGCAGTCTGAAAGTATTTCCAGAATGGGATAATACCA 33006 |||||||| |||||| || ||||| ||||| |||| || |||| || || || Sbjct 5452 CCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTGCTTATAGAACGGAATGCAGCCG 5393 Query 33007 GTATGACGAA--CCTCGCCAGAACGAATTCTAGAGCCTTCAGCACGAATAGCACCACCAT 33064 || || ||| | || || || || ||| ||||| || ||| | | Sbjct 5392 GTGTG--GAATGCTTCACCGCCGCGGATCGGGCTGCCCAGCGCACGGATGCGACCGGCGT 5335 Query 33065 TGATACCGATACCAGCTCTCTTGCTGATA----TAGTCAACGATAGAACTAGCGGTTGCG 33120 | || |||||||| || | ||||| | || | || || | || | ||| ||| Sbjct 5334 TAATGCCGATACCGGCAC----GCTGAGAAACGTACTTCACAATCGCGCTGGAGGTGGCG 5279 Query 33121 TTAATGCTATCGAGTTCATCACCACTTTCAATCTTGACGCATGAGCTAAACTGACGGGTC 33180 |||||| ||| || || || | |||||| ||||| ||||| ||||| || ||| Sbjct 5278 TTAATGGAATCAAGGCTGTCGCCGCACTCAATCAGTACGCAGGAGCTGAACTGGCGCGTC 5219 Query 33181 GGAGTACGAACACCAGCCAGAATAGGAGTCGGAAG 33215 || || || || || | || ||| || ||||| || Sbjct 5218 GGGGTGCGCACGCCGGACATAATTGGCGTCGGCAG 5184 >seq129507 Length=2248 Score = 87.8 bits (96), Expect = 3e-12 Identities = 72/87 (83%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 97394 AGAAACTGGTAGCCATGGGCAGGATTGAACTGCCGACCCCACCCTTATCAGGGGTGTGCT 97453 || || |||||| ||||||| |||||||||||||| ||||||||||||||||| ||| Sbjct 2030 AGCAATTGGTAGGTCTGGGCAGATTTGAACTGCCGACCTCACCCTTATCAGGGGTGCGCT 1971 Query 97454 CTA--CCACTGAGCTACATGGCTATAA 97478 ||| | ||||||||||| |||||| Sbjct 1970 CTAACCAACTGAGCTACAGACCTATAA 1944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 705858796460560