Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_023693.1 Length=148612 Score E Sequences producing significant alignments: (Bits) Value seq161193 179 3e-40 seq217324 132 5e-26 seq127507 131 2e-25 seq105811 122 8e-23 seq447744 116 3e-21 seq79986 89.7 5e-13 >seq161193 Length=8952 Score = 179 bits (198), Expect = 3e-40 Identities = 238/325 (73%), Gaps = 4/325 (1%) Strand=Plus/Plus Query 25457 ATATCTGGATCATTCCACGCAAGACTACACTCTGAAGTC-GGATCGTAATATTCTGTACA 25515 || ||||| |||||||| || || | || || || |||| ||| || |||||||| Sbjct 273 ATGTCTGGGTCATTCCAGGCGAGGGAAGCTTCA-AACTCAGGATAGTAGTAATCTGTACA 331 Query 25516 TTTGTATTCAAAATCAGCAATATCACTAATCACAACAAAGCCATGAGCGAAACCAGGAGG 25575 ||| || |||||||||||||| ||||| | || ||||| ||||| |||| |||||| || Sbjct 332 TTTATACTCAAAATCAGCAATGTCACTCAAGACTACAAATCCATGTGCGAGACCAGGCGG 391 Query 25576 AATCCAAAATTGTGTTTTATTCTTTTCAGATAAGAGAACACCTACCCATTCTCCAAATGT 25635 | |||||| ||| | || || | || ||| | || ||| |||||| ||||| || Sbjct 392 CACCCAAAACTGTTTCTTGTTTTCCTCGTTTAAAATAAAACCAGCCCATTTGCCAAACGT 451 Query 25636 TGGACTACCAACCCTAATATCTACAGCAACATCATAAACTTCACCACGAACACAGCGTAC 25695 ||| | || || |||||||||||||||||| |||| || || | ||| || || Sbjct 452 AGGAGAATCAGATCTTATATCTACAGCAACATCAAAAACCTCGCCTCTTACAACCCGAAC 511 Query 25696 CAACTTCCCTTGTGGGTTTTTCTTTTGAAAATGAAGCCCACGTAGAAC-TCCTCGGATAG 25754 | || ||||| || || || ||||||||||| || ||||| | || | || || ||| Sbjct 512 AAGTTTTCCTTGCGGATTATTTTTTTGAAAATGCAGACCACGCAATACATTCTTGG-TAG 570 Query 25755 AACGTGAATGGTTATCTTGGACAAA 25779 | || ||||| |||||||| ||||| Sbjct 571 AGCGGGAATGATTATCTTGAACAAA 595 >seq217324 Length=11369 Score = 132 bits (146), Expect = 5e-26 Identities = 500/777 (64%), Gaps = 17/777 (2%) Strand=Plus/Plus Query 26012 AAAGCAATCTCTTCCAGGCATGCAACCTTCATACCTTGTTGCTTCTCTATTGCATGAACA 26071 ||||||||||||||| | || || || |||| || ||| | ||||| | |||| | Sbjct 9338 AAAGCAATCTCTTCCGGACAGGCTACTTTCAGGCCCTGTCGTGATTCTATAGTCTGAATA 9397 Query 26072 AATTGAGATGCTTCCATAAGACTTTCATGTGTTCCTGTATCCAGCCAAGTGAAACCTCTT 26131 || | |||||||| ||||| | ||| || || ||||| ||||| | ||| | Sbjct 9398 AAGTTGTTCGCTTCCATCAGACTCTGATGCGTACCGGTATCAAGCCAGGCATGACCGCGG 9457 Query 26132 CCTAGTTTACAGACACGTAAAGTCTTTTCTT--TCCA-GTACATCTCATTTATATCCGTA 26188 || | | | || || ||||| || ||| |||| ||| || || || || ||| Sbjct 9458 CCCA--TAATGGATACAGAAAGT-TTGCCTTGCTCCATGTAGATACGGTTAATGTCAGTA 9514 Query 26189 ATCTCTAACTCCCCTCTAGCAGAAGGTTTAACGCTCTTAGCTTTCTGTATAACAGAATTA 26248 ||||| | || || | || ||||| | | | | || || | | | |||| || Sbjct 9515 ATCTCGAGTTCACCACGAGGGGAAGGCTGCAGGTTTTTCGCCATTTCCACAACACTGTTG 9574 Query 26249 TCGTAAAAGTACAAGCCTGTGATTGCGTAGTTGCtttttggtgtttttggtttttCTTCA 26308 || ||||| || | || || | || || ||||| || | | |||||||| | Sbjct 9575 TCATAAAAATAGAGCCCAGTAACGGCATAATTGCTGCGAGGGTTCTCAGGTTTTTCCACC 9634 Query 26309 ATACTCACCACTGTACCTTCAGAATCAAACTCAACAACACCAAATCTTTCAGGATCATTT 26368 | | || |||| || |||||| || ||||||||| | | |||||||| | Sbjct 9635 AGCGAAATAGCTTTACCCTCCTTATCAAATTCTACAACACCATAACGCTCAGGATCGGTA 9694 Query 26369 ACGTGATACCCAAAGATATTAGCTCCACCATTCTTTTCAATATGTTCTTTAGCAGAATCT 26428 |||||||| |||||| |||| ||| ||| ||| |||| |||| || Sbjct 9695 ACGTGATAAGCAAAGACGGTAGCGCCATCATCCTT--CAATGAC-------GCAGCTTC- 9744 Query 26429 AAAATGCTACCAAAACTC-TGACCAAAGAATAAATTATCACCTAGCACAAGTGCTACAGA 26487 || |||| | | || || || |||| | |||||| || || | ||||| || || Sbjct 9745 AAGCTGCTTGTAGAGGTCATGCCCGTAGAAAATATTATCGCCGAGGATTAGTGCGACTGA 9804 Query 26488 ATCTTCACCAATAAAGTTCTCACCAATAATAAACGCTTCTGCTAAACCTTTTGGGCTATC 26547 ||| ||||| || || | |||||||| || ||||| | || | || | || || Sbjct 9805 ATCATCACCGATGAACTCTTCACCAATGATGAACGCCTGAGCCAGGCCATCCGGACTCGG 9864 Query 26548 CTGTATTGCATACTGTAGGGAAATACCAAAAGAAGAACCATCACCTAGAAGATTTACAAA 26607 || | | |||||| | || || || | ||| |||||||| || || || | || Sbjct 9865 TTGCACTTTATACTGAATCGAGATGCCCCACTGAGAGCCATCACCCAGCAGGCTTTCGAA 9924 Query 26608 ATTAATTTGATCTTCTGGTGTTGTAATTATTAGTATTTCCCTAATTCCAGAAAGCATTAG 26667 || | ||||| | || || || || || ||||||| | |||||| || Sbjct 9925 TCGCGGCGTGTCCTGCGGTGTGCTGATAATCAGGATATCGTTAATTCCTGCAAGCATCAG 9984 Query 26668 GACAGAGAGTGGATAATAAATCATAGGTTTATCGTAAATTGGTAATAGTTGTTTACTAAC 26727 |||||||||||||||||| || ||||| |||| ||| | ||||| ||||| || Sbjct 9985 CGTGCTGAGTGGATAATAAATCATCGGCTTATCATAAACTGGAAGCAGTTGCTTACTGAC 10044 Query 26728 CCCTTTAGTAACTGGGTAAAGCCTTGTTCCACTACCACCTGCTAAGATAATACCTTT 26784 | | || || |||||||| | ||||| || || || | ||||||||||| Sbjct 10045 TGCCATTGTTACCGGGTAAAGACGCGTTCCTGAGCCGCCAGCGAGAATAATACCTTT 10101 >seq127507 Length=8921 Score = 131 bits (144), Expect = 2e-25 Identities = 171/235 (73%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 25496 GGATCGTAATATTCTGTACATTTGTATTCAAAATCAGCAATATCACTAATCACAACAAAG 25555 |||| ||||| || || ||||| ||||||||||| |||| || || | |||||||| Sbjct 293 GGATGATAATAATCCGTGCATTTATATTCAAAATCTGCAACGTCGCTTAAAACAACAAAA 352 Query 25556 CCATGAGCGAAACCAGGAGGAATCCAAAATTGTGTTTTATTCTTTTCAGATAAGAGAACA 25615 ||||| || |||||||| |||||||| || ||| ||||||| |||||| | | ||| Sbjct 353 CCATGGGCCAAACCAGGTGGAATCCAGAACTGTTTTTTATTGTTTTCATTGAGTATGACA 412 Query 25616 CCTACCCATTCTCCAAA--TGTTGGACTACCAACCCTAATATCTACAGCAACATCATAAA 25673 || |||||| ||||| | || || | || | ||||| || ||||||||| ||| Sbjct 413 CCATACCATTCGCCAAAGGTTTTTGAGT--CAGGACGTATATCAACTGCAACATCAAAAA 470 Query 25674 CTTCACCACGAACACAGCGTACCAACTTCCCTTGTGGGTTTTTCTTTTGAAAATG 25728 | || || |||||| | || ||||| ||||| |||| | ||||||| || Sbjct 471 CCTCGCCCCGAACAACTCTGACTAACTTTCCTTGCGGGTGTGAGGTTTGAAAGTG 525 >seq105811 Length=4087 Score = 122 bits (134), Expect = 8e-23 Identities = 502/780 (64%), Gaps = 19/780 (2%) Strand=Plus/Minus Query 26013 AAGCAATCTCTTCCAGGCATGCAACCTTCATACCTTGTTGCTTCTCTATTGCATGAACAA 26072 |||| || || || | || || ||||| | |||||| | | || || | ||||| || Sbjct 2790 AAGCGATTTCCTCTAAACACGCGACCTTGAAACCTTGGCGTTCTTCAATCGTATGAATAA 2731 Query 26073 ATTGAGATGCTTCCATAAGACTTTCATGTGTTCCTGTATCCAGCCAAGTGAAACCTCTTC 26132 | ||||| || || | | ||| || |||||||| ||||| | ||| | || |||| | Sbjct 2730 ACTGAGAGGCATCGAGTAAACTCTCGTGTGTTCCGGTATCTAACCACGCAAAGCCTCGGC 2671 Query 26133 CTAGTTTACAGACACGTAAA-GTCTTTTCTTTCCAGTACATCTCATTTATATCCGTAATC 26191 ||||| | |||| ||| | | ||| || | | ||||||| || || ||||||| Sbjct 2670 CTAGTCTTTCGACATTTAACTGGCCTTT-TTCCAAATACATCTGGTTAATCGCCGTAATT 2612 Query 26192 TCTAACTCCCCTCTAGCAGAAGGTTTAACGCTCT-TAGCTTTCTGTATAACAGAATTATC 26250 ||||| ||||| | | |||||||||||| || | | || ||| |||| | ||| Sbjct 2611 TCTAATTCCCCCCGTGAAGAAGGTTTAAC-CTGTCTGGCCATCTCGGTAACTTGGTGATC 2553 Query 26251 GTAAAAGTACAAGCCTGTGATTGCGTAGTTGCtttttggtgtttttggtttttCTTCAAT 26310 |||||| || | ||| |||| || |||| | ||| | ||||||||||| | Sbjct 2552 GTAAAAATAGAGGCCAGTGACCGCCCAGTTAGATCGTGGCTGCGTCGGTTTTTCTTCTAG 2493 Query 26311 ACTCACCACTGTACCTTCAGAATCAAACTCAACAACACCAAATCTTTCAGGATCATTTAC 26370 | | | || || | ||| || || || || ||| | | ||||| ||| || Sbjct 2492 AGAAAGCGCTTTAAACTGTTGATCGAATTCCACCACCCCATAGCGATCAGGGTCACGCAC 2433 Query 26371 GTGATACCCAAAGATATTAGCTCCACCATTCTTTTCAATATGTTCTTTAGCAGAATCTAA 26430 ||||| || || | | || || || | || ||| | | || |||| Sbjct 2432 TTGATAGCCGAAAACCGTCGCACC-GGAT--------AAATTTTCAGCAACCGATACTAA 2382 Query 26431 AATGCTACCAAAACTCTGACCAAAGAATAAATTATCACCTAGCACAAGTGCTACAGAATC 26490 | || ||||| | || || || || | |||||| || || || || || | || Sbjct 2381 CTTACTGCCAAATCCTTGCCCGAAAAAGATATTATCCCCCAGTACCAGCGCGCAATCCTC 2322 Query 26491 TTCACCAATAAAGTTCTCACCAATAATAAACGCTTCTGCTAAACCTTTTGGGCTATCCTG 26550 | | | ||||||| ||||||||| | ||| |||| || | |||| ||| | ||| Sbjct 2321 TCCGGCTATAAAGTCCTCACCAATCAGAAAAGCTTGCGCGAGTCCTTCTGGTTTCGGCTG 2262 Query 26551 TATTGCAT-ACTGTAGGGAAATACCAAAAGAAGAACCATC-ACCTAGAAGATTTACAAAA 26608 | | ||| | | | | || |||||| ||||| || | ||| || ||| Sbjct 2261 CACTTCATAAGTCAAACGTAA-ACCAAACTGTTGCCCATCTCCCAACAAGCGTT--GAAA 2205 Query 26609 TTA-ATTTGATCTTCTGGTGTTGTAATTATTAGTATTTCCCTAATTCCAGAAAGCATTAG 26667 | | | |||| || || ||||| || || | || || | || || | | ||||| Sbjct 2204 TGACGTCAGATCGTCGGGCGTTGTGATGATCAAGATATCGCGGATCCCTGCGATCATTAA 2145 Query 26668 GACAGAGAGTGGATAATAAATCATAGGTTTATCGTAAATTGGTAATAGTTGTTTACTAAC 26727 || || || || || || ||||| ||||||||||||| || | || ||||| || Sbjct 2144 TACCGACAGCGGGTAGTAGATCATCGGTTTATCGTAAACAGGGAGTAACTGTTTGGAAAT 2085 Query 26728 CCCTTTAGTAACTGGGTAAAGCCTTGTTCCACTACCACCTGCTAAGATAATACCTTTCAT 26787 ||||| ||| | |||||||||| ||| || ||||| || | | ||| |||||||| Sbjct 2084 CCCTTGAGTGATCGGGTAAAGCCGTGTGCCGGAGCCACCCGCAAGTACAATTCCTTTCAT 2025 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 27208 GGTATTAGTTTTTCTGGATGATGATATGCTCCAAAATTATTTGAACAATTTGTTATAACT 27267 || || |||||||| || ||||| | ||| |||| || || ||||| |||| ||| Sbjct 1547 GGGATAAGTTTTTCCGGGAACTGATAGGGACCATAATTGTTCGAGCAATTGGTTACAACG 1488 Query 27268 GTCGGAATACCATAAGTACGATGCCACGCTCTTACCAAATGATCGCTTGCAGCTTTAGAT 27327 | || | || ||||||||||| || | || || ||||||||||||||||| || Sbjct 1487 ATTGGCAGCTGGTAGGTACGATGCCATGCACGCACTAAGTGATCGCTTGCAGCTTTCGAG 1428 Query 27328 GCAGCATATGGACTACTTGGTTTATAAGGATTCTGTTCTGTAAACGGATAATCTCCTTCT 27387 || | || || || || || |||||| | ||||| ||||| | || || Sbjct 1427 GCGGAGTAAGGGCTGCTCGGCGCATAAGGCGTTTGTTCGGTAAAAAAGTCATTGGTCTCA 1368 Query 27388 TCCAGATCACCATACACTTCATCTGTTGAAATATGATGGAA 27428 | | ||||||| | |||||||| || || ||||| || || Sbjct 1367 GCTAAATCACCAAAAACTTCATCGGTCGAGATATGGTGAAA 1327 >seq447744 Length=295 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 27217 TTTTCTGGATGATGATATGCTCCAAAATTATTTGAACAATTTGTTATAACTGTCGGAATA 27276 ||||| || |||||| | ||| |||||||||| || || || || || ||| | | Sbjct 29 TTTTCAGGGAAATGATAGGGCCCATAATTATTTGAGCAGTTGGTGATGACCACCGGTAAA 88 Query 27277 CCATAAGTACGATGCCACGCTCTTACCAAATGATCGCTTGCAGCTTTAGATGCAGCATAT 27336 ||||| ||||||||||| ||||| || | ||||| || ||||| || || | ||| Sbjct 89 CCATATGTACGATGCCATGCTCTGACTAGGTGATCACTACTCGCTTTCGAGGCTGAATAA 148 Query 27337 GGACTACTTGGTTTATAAGGATTCTGTTCTGTAAACGGATAATCTCCTTCTTCCAGATCA 27396 ||||||||||| |||||| | | ||| |||||| ||| | | | || | ||| Sbjct 149 GGACTACTTGGCGCATAAGGCGTTTCTTCGGTAAACAGATCCTTGGTTCCCTCTAAATCG 208 Query 27397 CCATACACTTCATCTGTTGAAATATGATGGAA 27428 ||||| || ||||| || ||||| |||||||| Sbjct 209 CCATATACCTCATCAGTAGAAATGTGATGGAA 240 >seq79986 Length=14001 Score = 89.7 bits (98), Expect = 5e-13 Identities = 117/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 26623 TGGTGTTGTAATTATTAGTATTTCCCTAATTCCAGAAAGCATTAGGACAGAGAGTGGATA 26682 ||| || |||| || || || |||| |||||||| ||||| ||| | ||||| Sbjct 3717 TGGCGTACTAATAATCAGAATATCCCGAATTCCAGCCAGCATCAGGGTGCTTAACGGATA 3658 Query 26683 ATAAATCATAGGTTTATCGTAAATTGGTAATAGTTGTTTACTAACCCCTTTAGTAACTGG 26742 ||| ||||| || ||||| ||||||||||| ||||| || || || | |||| || || Sbjct 3657 ATAGATCATTGGCTTATCATAAATTGGTAACAGTTGCTTGCTCACAGCCATAGTCACCGG 3598 Query 26743 GTAAAGCCTTGTTCCACTACCACCTGCTAAGATAATACCTTT 26784 ||| || | ||||| || ||||| || ||||| ||||| Sbjct 3597 GTAGAGGCGCGTTCCCGAGCCTCCTGCCAAAATAATTCCTTT 3556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472463589503520