Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq240696 266 1e-65 seq174222 147 7e-30 seq81836 125 2e-23 seq97837 116 1e-20 seq404176 96.9 1e-14 >seq240696 Length=1994 Score = 266 bits (294), Expect = 1e-65 Identities = 563/828 (68%), Gaps = 18/828 (2%) Strand=Plus/Minus Query 188763 TAATGTTCTTTTAGTTGGCCCTACTGGTTCAGGTAAAACATTATTTGCTCAAACATTGGC 188822 |||| || | ||| |||| || |||||| || ||||| ||||| || ||||| |||| Sbjct 875 TAATATTTTATTAATTGGACCAACTGGTAGTGGAAAAACTTTATTAGCAGAAACACTGGC 816 Query 188823 TGATATGTTACATGTACC-TCTAGCTATCTCTGATGCAACTTCTTTAACAGAAGCTGGTT 188881 | | ||| ||||||| | |||| || |||| |||||| ||||||| ||||| || | Sbjct 815 AAAATTATTAAATGTACCATTTAGC-ATTGCTGACGCAACTACTTTAACTGAAGCAGGAT 757 Query 188882 ATGTAGGTGAAGATGTGGAAAACGTATTGCTTCGTTTAATCCAAGCAGCTGATTACGATA 188941 | || || ||||| || ||||| || | | || | ||| | | | ||| || Sbjct 756 ACGTCGGAGAAGACGTAGAAAATGTCATACAAAAACTATTGCAAAAATGTAAATACAATG 697 Query 188942 TCGAATTAGCGGAACGTGGAATTGTATATATCGATGAAGTAGATAAAATTGCTAGAAAAT 189001 || || ||| ||| || ||||| ||||| || ||| ||||||||||| | ||||||| Sbjct 696 TCAAAAAAGCAGAATTAGGGATTGTTTATATAGACGAAATAGATAAAATTTCAAGAAAAT 637 Query 189002 CAGAAAGCACATCCATTACCCGAGATGTATCTGGCGAAGGAGTACAGCAAGCTTTATTAA 189061 | || | | || ||||| ||||||| ||||| ||||||||||| |||||||| |||| Sbjct 636 CTGATAATCCTTCTATTACTAGAGATGTTTCTGGAGAAGGAGTACAACAAGCTTTGTTAA 577 Query 189062 AAATCATTGAAGGTACAGTTGCGAAAGTTCCTCCTCAAGGTGGTCGTAAACACCCTCACC 189121 || | |||||||| || | || | |||| || |||||||| | ||||| || || | Sbjct 576 AATTAATTGAAGGCACCTTAGCATCAATTCCACCACAAGGTGGAAGAAAACATCCACAAC 517 Query 189122 AAGAAATGCTTGAAATAGATACAACTAATATCTTGTTTATTCTTGGTGGAGCGTTTGATG 189181 ||||| | | || | |||| | ||||| || ||||| || || || ||| | Sbjct 516 AAGAATTTTTACAAGTTAATACTTCAAATATTTTATTTATATGTGCAGGGGCATTTTCAG 457 Query 189182 GTCTTGAAAACATTAT---CAAGAGACGCGCTAC--AAAATCAACTTTAGGTTTTGATGA 189236 ||| || ||||| || ||| | ||| ||| || | |||||| || Sbjct 456 AACTTTCTAAAATTATTTCTAAAAGAATTGATACTGGTAAT--ACAATTGGTTTTAATAC 399 Query 189237 TAGTGTAGATAAAGTACAAGAAGAAATCAAGGATGACAATAAAGTATTCCAACATCTTCA 189296 |||| | | |||| | || |||||| || | ||||| | | || ||||| | | Sbjct 398 TAGTCT-TAAAAAGAAAAAAAAGAAA-GAATCAGAACAAT-ATTTGTTGCAACAAGTCGA 342 Query 189297 ACCGCAAGATATTGTTAAGTATGGTTTAATTCCAGAATTTATTGGGCGTGTACCAGTAAT 189356 | | ||||| | | || | ||| |||||||| ||||||||||| ||| |||| || | Sbjct 341 ATCAAAAGATTTAATAAAATTTGGATTAATTCCTGAATTTATTGGTCGTTTACCTATAGT 282 Query 189357 CGCAACTCTTAACAAACTTGATCGAGATGCATTGATTAACATTTTAACTGAGCCGCAAAA 189416 | | | | ||| || | || |||||| | |||| || ||| | | || |||| Sbjct 281 TACTATTTTAAACGAATTAAATGAAGATGCTCTCGTTAAGATATTATGTAAACCTAAAAA 222 Query 189417 CGCTATCATTAAACAATATCAGAAATTGTTAGATATGGATGGCGTGGAATTAGAATTCCA 189476 ||| | || |||||||| || | ||||| || | || || |||||||||| Sbjct 221 TGCTTTAATCAAACAATACCAAACGTTGTTTAATCTAGAAAAAGTAAAATTAGAATTTAC 162 Query 189477 AAAAGAAGCATTAGAATCAATTGCAGATGAAGCGATTG---AACGTAATACTGGTGCTCG 189533 ||||||||| | ||| |||||| | |||| | || || || || || || | Sbjct 161 AAAAGAAGCTGTTATATCCATTGCAAAAAAAGC-ACTGTCTAA--AAAAACAGGAGCCAG 105 Query 189534 CGGATTACAATCCATTATTGAAAATATTATGTTAGATGTAATGTATGA 189581 |||||| ||| |||||||||||||| | |||||| | |||||||| Sbjct 104 AGGATTAAGATCTATTATTGAAAATATCTTATTAGATATCATGTATGA 57 >seq174222 Length=9462 Score = 147 bits (162), Expect = 7e-30 Identities = 213/301 (71%), Gaps = 0/301 (0%) Strand=Plus/Plus Query 188882 ATGTAGGTGAAGATGTGGAAAACGTATTGCTTCGTTTAATCCAAGCAGCTGATTACGATA 188941 |||| || |||||||| |||||| | | | || | ||| | ||| |||||| Sbjct 1 ATGTCGGGGAAGATGTTGAAAACATCATCCAGAAGCTACTACAAAAATGTGACTACGATG 60 Query 188942 TCGAATTAGCGGAACGTGGAATTGTATATATCGATGAAGTAGATAAAATTGCTAGAAAAT 189001 | || ||| ||||||| || || ||||||||||| | ||||||||| | | || | Sbjct 61 TTGAGAAAGCACAACGTGGTATCGTTTATATCGATGAGATCGATAAAATTTCACGTAAGT 120 Query 189002 CAGAAAGCACATCCATTACCCGAGATGTATCTGGCGAAGGAGTACAGCAAGCTTTATTAA 189061 |||| | | | || || ||||| ||||| || |||||||| || || ||||| ||| | | Sbjct 121 CAGATAACCCTTCTATCACCCGTGATGTCTCGGGCGAAGGTGTTCAACAAGCCTTACTGA 180 Query 189062 AAATCATTGAAGGTACAGTTGCGAAAGTTCCTCCTCAAGGTGGTCGTAAACACCCTCACC 189121 || | || ||||| ||||| || |||||||| |||||||| |||||||| || || | Sbjct 181 AACTGATCGAAGGGACAGTGGCAGCCGTTCCTCCACAAGGTGGCCGTAAACATCCACAAC 240 Query 189122 AAGAAATGCTTGAAATAGATACAACTAATATCTTGTTTATTCTTGGTGGAGCGTTTGATG 189181 |||| | | || | |||||| | || || | ||||| ||| || || |||| || Sbjct 241 AAGAGTTTTTGCAAGTTGATACATCAAAAATTCTCTTTATCTGTGGGGGCGCTTTTGCTG 300 Query 189182 G 189182 | Sbjct 301 G 301 >seq81836 Length=3333 Score = 125 bits (138), Expect = 2e-23 Identities = 228/331 (69%), Gaps = 2/331 (1%) Strand=Plus/Minus Query 206947 AAAGGTAATGTGAAAGCTCGTATGAGAATGATAGCTCAATATGCTATTGGCGGAGCGAAA 207006 ||||| |||| ||||| | ||||||| || |||||| ||||| | ||| Sbjct 882 AAAGGAAATGAAAAAGCAAGAGAAAGAATGAAAGTACAATATAGTATTGCAGCTATAAAA 823 Query 207007 AATCTATTAGTAATTGGAACAGATCATGCTGCAGAAGCTATAACTGGTTTCTATACAAAA 207066 ||| | |||| ||||||||| | || |||||| | || ||||| |||| ||||||| Sbjct 822 AATGGACTAGTTGTTGGAACAGGAAACGCAGCAGAAACCATTACTGGATTCTTTACAAAA 763 Query 207067 TTTGGAGACAATGGAGTAGATATTTTACCTATAAGCGGTCTTACG-AAAAGACAAGGTAA 207125 |||||| |||||| ||||||| || || | ||| |||||||| || | Sbjct 762 CATGGAGATAATGGAACAGATATTA-ACTTAATTTCTAAATTAAATAAAAGACAGGGGAG 704 Query 207126 AATGTTATTGGAAGAATTAAATGCTCCAGAGAGATTATATTTAAAAGTACCAACAGCAGA 207185 | | || || ||||||||||| ||| || |||||||||||| |||||| || || Sbjct 703 ATTATTGTTAAAAGAATTAAATTGTCCTGATCATTTATATTTAAAAAAACCAACTGCTGA 644 Query 207186 TCTTTTAGATGATAAACCATTACAAACAGATGAAGATGAGTTGGGTATGACTTACGATGA 207245 |||| |||||| || ||| | || ||| ||| | || ||| | || || |||| Sbjct 643 TCTTGAAGATGAAAACCCACAAAAAGAAGACGAACTAGCTTTAGGTGTAACATATAATGA 584 Query 207246 AATAGATAGTTACTTAGAAGGATTAGAAATA 207276 ||| ||| ||| ||||| ||| | ||||| Sbjct 583 AATTGATGATTATTTAGAGGGAAAAAAAATA 553 >seq97837 Length=15579 Score = 116 bits (128), Expect = 1e-20 Identities = 280/421 (67%), Gaps = 7/421 (2%) Strand=Plus/Plus Query 54138 ATGATTGAACAAAGATACCAACCAGCTACTCCAACTTTCCTAAATGCTGGTAGAAGCAGA 54197 |||||| ||| ||| || || ||||| || || ||||| || ||||| | | ||| Sbjct 7526 ATGATTAGCCAAGAATATCAGCCCGCTACGCCGACATTCCTGAACGCTGGAAAGAAAAGA 7585 Query 54198 CGCGGAGAAATGGTTTCTTGTTTCTTATTAGAAATGGATGATAGCTTGAATTCAATTGGT 54257 || || | ||||||||||||||| || | | || | ||| || |||||| Sbjct 7586 TCTGGCGAGTTAGTTTCTTGTTTCTTAGATGAGGTTGGCGACAACTTAAACGGAATTGGC 7645 Query 54258 TTCAATATCAATACTGCAATGCAATTATCTAAAATTGGCGGCGGCGTTGCCTTAAACCTT 54317 | | || | | |||||| | ||||| || || || || || | || ||| | Sbjct 7646 TACGCGATTGACTCGGCAATGAAGCTATCTTCTATCGGTGGTGGTGTGTCATTTAACATC 7705 Query 54318 TCTAAACTTAGAG---GAAGAAAAGAGCAAATTAAAGGTATTGATGATGCTGCTTCTGGA 54374 || ||| | | | | | ||| | |||||||| | |||| | ||| || Sbjct 7706 TCCAAAATCCGTGCGCGTGGCGAAGCG---ATTAAAGGAGTAGATGGTCGCGCTGGAGGT 7762 Query 54375 GTAGTACCAGTTATGAAACTTTTAGAAGATAGCTTCTCTTATGCTAATCAGCTTGGCCAA 54434 ||| | || | |||||| | | ||||||| |||||||| || || ||| | || ||| Sbjct 7763 GTATTGCCGATCATGAAAATCATGGAAGATACGTTCTCTTACGCGAACCAGTTAGGGCAA 7822 Query 54435 AGAAAAGGCGCTGGAGCTGTTTACTTAAACATCTTCCACTGGGATATTATTGAATTCTTA 54494 | ||| || || || || || || ||||| ||||||| ||||||| || || || Sbjct 7823 CGCCCAGGTGCAGGTGCGGTATATTTGAACATTTTCCACTCGGATATTGAAGAGTTTTTG 7882 Query 54495 GATACTAAAAAGATCAATGCTGATGAAAAAGCCAGAATTCAATCTTTATCTATTGG-ATT 54553 ||| ||||||||||||||| ||||| |||| | || |||| |||||||||| ||| Sbjct 7883 GATTGTAAAAAGATCAATGCCGATGAGAAAGTGCGTATCAAATCACTATCTATTGGTATT 7942 Query 54554 A 54554 | Sbjct 7943 A 7943 >seq404176 Length=244 Score = 96.9 bits (106), Expect = 1e-14 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 54400 AAGATAGCTTCTCTTATGCTAATCAGCTTGGCCAAAGAAAAGGCGCTGGAGCTGTTTACT 54459 |||||| |||||||||||| ||||| | || ||| | || |||||||| || |||| Sbjct 244 AAGATACCTTCTCTTATGCAAATCAATTAGGACAACGTCCTGGTGCTGGAGCAGTATACT 185 Query 54460 TAAACATCTTCCACTGGGATATTATTGAATTCTTAGATACTAAAAAGATCAATGCTGATG 54519 |||| |||||||||| |||||| || ||| | ||| |||||| ||||||| || | Sbjct 184 TAAATATCTTCCACTCTGATATTGAAGAGTTCCTTGATTGTAAAAAAATCAATGTGGACG 125 Query 54520 AAAAAG 54525 |||||| Sbjct 124 AAAAAG 119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1581728112758208