Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_023856.1 Length=152460 Score E Sequences producing significant alignments: (Bits) Value seq302683 86.0 6e-12 seq260686 86.0 6e-12 seq89823 86.0 6e-12 seq266160 82.4 7e-11 >seq302683 Length=202 Score = 86.0 bits (94), Expect = 6e-12 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 150948 AACTCACCAAACCATTGGGATGGTGAACAAACTGGCAACAAGCACGTCTTCTTCATCTTG 151007 ||||| || ||||||||||| || ||| |||||||||||||| ||||||||| || Sbjct 1 AACTCTCCGAACCATTGGGACGGGGAAGCGACTGGCAACAAGCATTACTTCTTCATGCTG 60 Query 151008 GAAGGTTGTGCGAATCCTGAAGGTACTCGTGGTTTCTACAATGAATATCTGAAGCCGGAA 151067 || ||| || | | || | |||||| ||||||||||| || || ||| ||| Sbjct 61 GACGGTGCTGTGCAGCCGGGTTCTACTCGCGGTTTCTACAACGAGTACCTGCGTAATGAA 120 Query 151068 CTGGATAAACATCGTAAGGTTTTTGAAATGTTGGGTAGTAAAATGAAAGT 151117 |||| | | || || || || || ||| ||| | | || |||||||| Sbjct 121 CTGGTTGAGCACCGCAAAGTGTTCGAACATCTGGCTGGCAAGATGAAAGT 170 >seq260686 Length=13603 Score = 86.0 bits (94), Expect = 6e-12 Identities = 266/406 (66%), Gaps = 8/406 (2%) Strand=Plus/Plus Query 31479 CTTCCAACACCCATCATGTCCGGCGTTCGTACCCCAACCCGCCAATTCAGTTCTTGTGTT 31538 || || || || || ||||||||||| || ||||| || ||||| ||||| || || || Sbjct 5184 CTGCCGACGCCAATTATGTCCGGCGTGCGCACCCCGACGCGCCAGTTCAGCTCCTGCGTA 5243 Query 31539 CTTATCAAAACCGGTGACACTTTGGACTCAATCAATGCTACAGCCAAAAGTATTGTTGAT 31598 || || | ||| |||| | || || || || || || ||| ||||| | Sbjct 5244 CTGATTGAGTGCGGCGACAGCCTTGATTCCATTAACGCCACCTCCAGCGCGATTGTGAAG 5303 Query 31599 TATGTATCCAAACGCGCTGGGATCGGATTTGATGTTGGAGCAATTCGTGGCATCGGTAGC 31658 || || || | || || || ||||| || | | || || |||| | || ||| Sbjct 5304 TACGTTTCTCAGCGTGCCGGTATCGGCATTAACGCCGGTCGCATCCGTGCGCTGGGCAGC 5363 Query 31659 CCTATCCGAAAAGGTGAAATGGTGCACACAGGCCTGGTTCCTTTC-ATAA--AATATCTG 31715 || ||||| |||||| | ||||| ||| |||| ||| |||| | | | | Sbjct 5364 CCGATCCGCGGCGGTGAAGCATTCCACACCGGCTGCATTCCGTTCTATAAGCACTTCCAG 5423 Query 31716 ACTGGGGCATTAAAGTCTTGCTCTCAAGGCGGTATTCGTGGCGGATCAGC-AACTTGCTA 31774 || | || | ||||| |||||||| ||||| | || ||||| |||| | | || | Sbjct 5424 ACCGCGG---TGAAGTCCTGCTCTCAGGGCGGCGTGCGCGGCGGTGCAGCGACCCTGTTC 5480 Query 31775 TATCCCTATCTGGCATTATCAATTTGATGATGTTGTGGTCCTGAAGAACAACCGTGGTCT 31834 || ||| || |||||| || | || | |||| |||||||||||||| || | Sbjct 5481 TA-CCCAATGTGGCATCTGGAAGTGGAAAGCCTGCTGGTGCTGAAGAACAACCGCGGCGT 5539 Query 31835 TGAAGAGAACCGTGAACGCCGTATCGACTATGGTATTCAGATCAAC 31880 ||||| ||||| | || | ||| ||||| || | ||| | ||| Sbjct 5540 TGAAGGCAACCGCGTGCGTCATATGGACTACGGCGTGCAGCTGAAC 5585 >seq89823 Length=2041 Score = 86.0 bits (94), Expect = 6e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 96730 CTACTTCAATTTGGCGACGATGGCAGGACTTGAACCTGCGACATACGATTTAACAGACCG 96789 || ||| |||||||| | || | ||||| ||||| | |||||||| ||||||| ||| Sbjct 580 CTTCTTAAATTTGGCTCCTCTGACTGGACTCGAACCAGTGACATACGGATTAACAGTCCG 521 Query 96790 CCGTTCTACCGACTGAACTACA 96811 |||||||||||||||||||||| Sbjct 520 CCGTTCTACCGACTGAACTACA 499 >seq266160 Length=9069 Score = 82.4 bits (90), Expect = 7e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 96737 AATTTGGCGACGATGGCAGGACTTGAACCTGCGACATACGATTTAACAGACCGCCGTTCT 96796 |||||||| | || | ||||| ||||| | |||||||| ||||||| |||||||||| Sbjct 300 AATTTGGCTCCTCTGACTGGACTCGAACCAGTGACATACGGATTAACAGTCCGCCGTTCT 359 Query 96797 ACCGACTGAACTACA 96811 ||||||||||||||| Sbjct 360 ACCGACTGAACTACA 374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 484700349407200