Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_024121.1 Length=167266 Score E Sequences producing significant alignments: (Bits) Value seq260686 197 1e-45 seq1462 192 6e-44 seq65234 149 7e-31 seq15764 145 8e-30 >seq260686 Length=13603 Score = 197 bits (218), Expect = 1e-45 Identities = 296/418 (71%), Gaps = 2/418 (0%) Strand=Plus/Minus Query 139708 ACATCAGATCGTTGATTTGCACACCGTAATCCAAGTGACGAATGCGGTTCTCTTCAACGC 139767 ||||||| | ||| | ||||| ||||| |||| ||||| | |||||| ||||||||| Sbjct 5595 ACATCAGCTTGTTCAGCTGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGC 5536 Query 139768 CTTTGTTGTTTTTCAGAACAAGCAAGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACA 139827 | |||||| ||||| || |||| | |||| ||||||| ||||| ||||| ||| ||| Sbjct 5535 CGCGGTTGTTCTTCAGCACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACA 5476 Query 139828 ACGTCGCTGCACCACCACGAACACCACCTTGAGAACAGGATTTAACCGCAGTCTGGAAGT 139887 ||||||||||| || || || || || ||||| ||||| || ||||| |||||||||| Sbjct 5475 GGGTCGCTGCACCGCCGCGCACGCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGT 5416 Query 139888 GTTTCCAGAAAGGAATTACGCCAGTGTGTTTGACTTCACCGAAACCAATTTTTGAGCCTT 139947 | || |||| ||||| ||| ||||| |||||||| | || ||| Sbjct 5415 GCTTATAGAACGGAATGCAGCCGGTGTGGAATGCTTCACCGCCGCGGATCGGGCTGCCCA 5356 Query 139948 CAGCTCGGATTCGACCTGCGTTGATGCCGATTCCAGCTCGTTTAGAAATGTACTTGACAA 140007 || ||||| ||||| ||||| |||||||| || || || | ||||| |||||| |||| Sbjct 5355 GCGCACGGATGCGACCGGCGTTAATGCCGATACCGGCACGCTGAGAAACGTACTTCACAA 5296 Query 140008 TCGATGCT-GCTGAGTCGTTGATACTGTTAAGCGAATCATCAGACTCGATAACAACACAC 140066 ||| ||| | | | |||| || | ||| || | |||| || | || || Sbjct 5295 TCG-CGCTGGAGGTGGCGTTAATGGAATCAAGGCTGTCGCCGCACTCAATCAGTACGCAG 5237 Query 140067 GAACTGAATTGACGAATCGGTGTACGGGCTCCTGCCATAATAGGAGTTGGCAATGAAA 140124 || ||||| || || |||| || || | || | |||||| || || |||| |||| Sbjct 5236 GAGCTGAACTGGCGCGTCGGGGTGCGCACGCCGGACATAATTGGCGTCGGCAGCGAAA 5179 >seq1462 Length=4781 Score = 192 bits (212), Expect = 6e-44 Identities = 295/418 (71%), Gaps = 2/418 (0%) Strand=Plus/Minus Query 139708 ACATCAGATCGTTGATTTGCACACCGTAATCCAAGTGACGAATGCGGTTCTCTTCAACGC 139767 |||| || | ||||||||| || |||||||| | |||||| | ||||| ||||||| | Sbjct 1447 ACATGAGTTTGTTGATTTGTACGCCGTAATCTAGGTGACGGACACGGTTACCTTCAACAC 1388 Query 139768 CTTTGTTGTTTTTCAGAACAAGCAAGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACA 139827 | ||| |||||||| || | ||| |||||| |||||||||||| || || || ||| Sbjct 1387 CACGGTTATTTTTCAGGACTAATAAGCTTTCAATTTCCAAGTGCCACATAGGGTAAAACA 1328 Query 139828 ACGTCGCTGCACCACCACGAACACCACCTTGAGAACAGGATTTAACCGCAGTCTGGAAGT 139887 ||||| ||||| || || || || ||||| || || ||||| || || |||||||||| Sbjct 1327 GTGTCGCGGCACCCCCGCGTACGCCGCCTTGCGAGCAAGATTTCACGGCCGTCTGGAAGT 1268 Query 139888 GTTTCCAGAAAGGAATTACGCCAGTGTGTTTGACTTCACCGAAACCAATTTTTGAGCCTT 139947 |||| |||| || || || || || ||||||| || ||| |||| Sbjct 1267 GTTTGTAGAACGGGATACAACCGGTATGGAAAGCTTCACCACCACGGATTGGGCTGCCTA 1208 Query 139948 CAGCTCGGATTCGACCTGCGTTGATGCCGATTCCAGCTCGTTTAGAAATGTACTTGACAA 140007 || || || || || || ||||| ||||| || || |||| |||| ||| || || | Sbjct 1207 GCGCACGAATACGGCCAGCATTGATACCGATCCCTGCGCGTTGTGAAACGTATTTAACGA 1148 Query 140008 TCGATGCTGCTGAGTCGTTGATACTGT-TAAGCGAATCATCAGACTCGATAACAACACAC 140066 | | | | | |||||||| || ||||| ||| || ||||||||| || || Sbjct 1147 TAGCACTAGAAGTGGCGTTGATAGAGTCTAAGC-TATCGCCACACTCGATAAGCACGCAT 1089 Query 140067 GAACTGAATTGACGAATCGGTGTACGGGCTCCTGCCATAATAGGAGTTGGCAATGAAA 140124 || |||||||| ||| |||| || || | || ||||| || || || || || |||| Sbjct 1088 GAGCTGAATTGGCGAGTCGGCGTCCGTACCCCAGCCATGATTGGCGTAGGTAAGGAAA 1031 Score = 136 bits (150), Expect = 4e-27 Identities = 285/417 (68%), Gaps = 16/417 (4%) Strand=Plus/Minus Query 137960 CAGATCGTCGTAGTATTTCGATACTGCTTCAGCACGTTTCATGATAGCGTCATTCAAGAC 138019 ||| ||||| ||||| || || | |||||||||| || ||| ||||||| || Sbjct 3268 CAGGTCGTCATAGTACTTAGAAATATCTTCAGCACGGCGCAGGATCTGGTCATTCGTCAC 3209 Query 138020 GATGGTCTCGAATTCTTTTGCTGGATCAGTGCAA-ACGTTGCGCATGATGTGGGTGTAAG 138078 ||| |||||| || || || || || || | || || || || || ||||||| Sbjct 3208 GATATCGTCGAATACTAGAGCCGGGTC-GTTCACGATATTACGAATAATATGAGTGTAAG 3150 Query 138079 AACGAGAGTGAATGGTCTCAGAGAATGTCCAAGTCTGAATCCATGTTTCAAGTCCAACAT 138138 |||| ||||| || || || ||||| | ||| || | || ||||||||| ||| || | Sbjct 3149 AACGTGAGTGGATCGTTTCGGAGAACGCCCAGGTTTCAACCCATGTTTCCAGTTCAGGAA 3090 Query 138139 CAGA----ACAGATATCAGCGAATGCGATAGCAGGTGCTCGTCCTTGAACTGAATCAAGG 138194 || | | || ||||| | || | | | ||| | ||||| | ||||| | Sbjct 3089 TGGAGATTAGCGGTAACAGCGCAA-CGTTCGGAC-TGCGC--CCTTGGATAGAATCCAAT 3034 Query 138195 AGTGTTTGATATTTCAAGTTGTTGGTGAAAATGCCTTGA---TCGTTTTCAGACATTTTC 138251 || ||||||||||| ||||| | |||| | ||| |||| ||||| | ||| Sbjct 3033 AGCGTTTGATATTTTAAGTTACTT---AAAAAGATATGACGTTCGTGTTCAGGAAGTTTT 2977 Query 138252 TGGAATTGAACACGATCTTTGGATACGTCTACTTCTTCTGGACGCCAAAAGAAGGAGAGT 138311 || || | | ||||| || || || |||||||| || |||||||||||||||||| Sbjct 2976 TGAAAATCGATCCGATCGCGTGAGACATCGACTTCTTCAGGGCGCCAAAAGAAGGAGAGT 2917 Query 138312 TGCTTTTCAGTCAACTTTTCAAATTTTTCGTGTTTTGGATCATCGTATCGAGCTACG 138368 ||||||||| ||| |||||||| |||| | |||| | | || || || || ||| Sbjct 2916 TGCTTTTCAATCAGTTTTTCAAAAATTTCATATTTTTGTTGGTCATAGCGCGCAACG 2860 >seq65234 Length=1614 Score = 149 bits (164), Expect = 7e-31 Identities = 276/405 (68%), Gaps = 14/405 (3%) Strand=Plus/Plus Query 139719 TTGATTTGCACACCGTAATCCAAGTGACGAATGCGGTTCTCTTCAACGCCTTTGTTGTTT 139778 || ||||| ||| | ||||| | ||||| | | || ||||||| ||| | || ||| Sbjct 659 TTAATTTGTACAGCATAATCAAGATGACGTACTCTATTTTCTTCAATTCCTCTATTATTT 718 Query 139779 TTCAGAACAAGCAAGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACAACGTCGCTGCA 139838 || | ||| | || ||||||| ||| | ||||| ||||| || | | || || || Sbjct 719 TTTAAAACTAATAAATTTTCAATTTCTAGATGCCATATTGGGTAAAAAACAGTTGCGGCC 778 Query 139839 CCACCACGAACACCACCTTGAGAACAGGATTTAACCGCAGTCTGGAAGTGTTTCCAGAAA 139898 || || | ||| |||||||||||||| ||||| || || | ||||||||||| | ||| Sbjct 779 CCTCCTCTAACTCCACCTTGAGAACAAGATTTTACTGCGCTTTGGAAGTGTTTATAAAAA 838 Query 139899 GGAATTACGCCAGTGTGTTTGACTTCACCGAAACCAATTTTTGA---GCCTTC----AGC 139951 ||||| || || || |||| || |||| ||| | |||| ||| Sbjct 839 GGAATACATCCGGTATGAAATGCTTCTCC-------ATTTCTGATAGGACTTCCTAAAGC 891 Query 139952 TCGGATTCGACCTGCGTTGATGCCGATTCCAGCTCGTTTAGAAATGTACTTGACAATCGA 140011 ||| ||| |||| ||||| ||||| ||||| ||||||| ||||| || || ||||| | Sbjct 892 TCGAATTTGACCAGCGTTAATGCCTATTCCTGCTCGTTGAGAAACATATTTTACAATTGC 951 Query 140012 TGCTGCTGAGTCGTTGATACTGTTAAGCGAATCATCAGACTCGATAACAACACACGAACT 140071 | || | || ||| ||| | ||| || | || || | ||||| ||||| Sbjct 952 ACTAGTTGTAGCATTAATAGAGTTTAAATTATCTGCACATTCAATTAACACACAAGAACT 1011 Query 140072 GAATTGACGAATCGGTGTACGGGCTCCTGCCATAATAGGAGTTGG 140116 ||||||||| | ||||| | |||||| |||||| || || || Sbjct 1012 AAATTGACGAGTTGGTGTTCTTACTCCTGACATAATCGGTGTGGG 1056 >seq15764 Length=1899 Score = 145 bits (160), Expect = 8e-30 Identities = 212/297 (71%), Gaps = 12/297 (4%) Strand=Plus/Minus Query 138057 TTGCGCATGATGTGGGTGTAAGAACGAGAGTGAATGGTCTCAGAGAATGTCCAAGTCTGA 138116 || || |||||||||||||||||||| |||||||| ||||| ||||| | ||| || | | Sbjct 932 TTACGGATGATGTGGGTGTAAGAACGGGAGTGAATCGTCTCTGAGAACGCCCAGGTTTCA 873 Query 138117 ATCCATGTTTCAAGTCCAACATCAGAACAGATATCAGCG-----AATGCGATAGCAGGTG 138171 ||||| ||||| ||| || ||| || ||||||| | |||| | | | Sbjct 872 ATCCAGGTTTCCAGTTCA-----GGAATCGAGATCAGCGGCAGCAGCGCGA-CGTTCGGG 819 Query 138172 CT-CGTCCTTGAACTGAATCAAGGAGTGTTTGATATTTCAAGTTGTTGGTGAAAATGCCT 138230 || || || |||| ||||| || || || |||||||||| |||| || | ||||| | Sbjct 818 CTGCGGCCCTGAATAGAATCCAGCAGCGTCTGATATTTCAGGTTGCTGATAAAAATATGT 759 Query 138231 TGATCGTTTTCAGACATTTTCTGGAATTGAACACGATCTTTGGATACGTCTACTTCTTCT 138290 | |||| || | || |||| | | | ||||| || ||||| || ||||| Sbjct 758 TTTTCGTGGTCCGGCAGCGCCTGGTAATCGATGCGATCGCGTGAAACGTCGACCTCTTCC 699 Query 138291 GGACGCCAAAAGAAGGAGAGTTGCTTTTCAGTCAACTTTTCAAATTTTTCGTGTTTT 138347 |||||||| ||||||||||| |||||||| ||| ||||||||| | || | |||| Sbjct 698 GGACGCCAGAAGAAGGAGAGCTGCTTTTCGATCAGCTTTTCAAAGATGTCATATTTT 642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531783890762160