Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_024122.1 Length=162910 Score E Sequences producing significant alignments: (Bits) Value seq286911 104 2e-17 seq462907 100 3e-16 seq189010 98.7 1e-15 seq302683 82.4 8e-11 seq163857 82.4 8e-11 >seq286911 Length=6367 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 83207 TGGTGACCCTGGCTGGACTTGAACCAGCGACCAATCGATTATGAGTCGACTGCTCTAACC 83266 ||||| ||| ||||| |||||||||||||||| ||||||||||||| ||||||||||| Sbjct 5715 TGGTGGCCCCTGCTGGGTTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTAACC 5774 Query 83267 ACTGAGCTACGGGGCCA 83283 ||||||||| ||||||| Sbjct 5775 ACTGAGCTAAGGGGCCA 5791 >seq462907 Length=336 Score = 100 bits (110), Expect = 3e-16 Identities = 69/77 (90%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 83207 TGGTGACCCTGGCTGGACTTGAACCAGCGACCAATCGATTATGAGTCGACTGCTCTAACC 83266 ||||| ||| ||||||||||||||||||||||| ||||||||||||| |||||||||| Sbjct 22 TGGTGGCCCCAGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCGTGCTCTAACC 81 Query 83267 -ACTGAGCTACGGGGCC 83282 ||||||||| |||||| Sbjct 82 AACTGAGCTATGGGGCC 98 >seq189010 Length=996 Score = 98.7 bits (108), Expect = 1e-15 Identities = 74/86 (86%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 83198 TTTATTTAGTGGTGACCCTGGCTGGACTTGAACCAGCGACCAATCGATTATGAGTCGACT 83257 ||||||| | || |||| |||||| |||||||||||||||| ||||||||||||| || Sbjct 767 TTTATTT--TAATGGCCCTTGCTGGATTTGAACCAGCGACCAAGCGATTATGAGTCGCCT 824 Query 83258 GCTCTAACCACTGAGCTACGGGGCCA 83283 ||||| |||||||||||| |||||| Sbjct 825 GCTCTGACCACTGAGCTAAAGGGCCA 850 >seq302683 Length=202 Score = 82.4 bits (90), Expect = 8e-11 Identities = 127/178 (71%), Gaps = 5/178 (3%) Strand=Plus/Plus Query 137278 AACTCACCAAACCATTGGGATGGCGAGCAGACAGGCAACAAGCACGTGTTTTTCATCCTG 137337 ||||| || ||||||||||| || || ||| ||||||||||| || ||||| ||| Sbjct 1 AACTCTCCGAACCATTGGGACGGGGAAGCGACTGGCAACAAGCATTACTTCTTCATGCTG 60 Query 137338 GAAGGT--TGTGCTAATCCTGAAGGTACTCGTGGTTTCTACAACGAATATCTGAAGCCGG 137395 || ||| ||||| | || | |||||| |||||||||||||| || ||| | Sbjct 61 GACGGTGCTGTGC--AGCCGGGTTCTACTCGCGGTTTCTACAACGAGTACCTGCGTAATG 118 Query 137396 AACTGGATAAACATCGTAAGGTTTTTGAAATGTTGGGTAGTAAAATGAAAG-TCCAGC 137452 |||||| | | || || || || || ||| ||| | | || ||||||| |||||| Sbjct 119 AACTGGTTGAGCACCGCAAAGTGTTCGAACATCTGGCTGGCAAGATGAAAGTTCCAGC 176 >seq163857 Length=4767 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 82713 TAATCCTGGCGACGATGGCAGGACTTGAACCTGCGACATACGGTTTAACAGACCGCCGTT 82772 ||||| |||| | || | ||||| ||||| | ||||||||| ||||||| |||||||| Sbjct 4363 TAATC-TGGCTCCTCTGACTGGACTCGAACCAGTGACATACGGATTAACAGTCCGCCGTT 4421 Query 82773 CTACCGACTGAACTACA 82789 ||||||||||||||||| Sbjct 4422 CTACCGACTGAACTACA 4438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517931675029200