Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_024124.2 Length=169148 Score E Sequences producing significant alignments: (Bits) Value seq79071 203 3e-47 seq222524 190 2e-43 seq1462 163 3e-35 seq65234 159 4e-34 seq209331 127 2e-24 seq213894 114 1e-20 >seq79071 Length=852 Score = 203 bits (224), Expect = 3e-47 Identities = 153/180 (85%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 108422 GGTGGTCAACACCTGAACGTTAACGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 108481 ||||| || || |||||||| |||||||||||||| ||||| ||||||||||||||||| Sbjct 360 GGTGGACAGCATCTGAACGTCAACGTTCTGCGTCGCGAAACGCTGGAAGATGCAGTTAAA 301 Query 108482 CATCCGGAAAAATATCCTCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 108541 ||||| ||||| ||||| |||||||| |||||||| || || ||||| || || |||||| Sbjct 300 CATCCTGAAAACTATCCGCAGCTGACTATCCGTGTTTCAGGCTATGCCGTGCGTTTTAAC 241 Query 108542 TCTCTGACTCCAGAACAGCAGCGCGACGTTATCGCTCGTACCTTTACTGAGAGTCTATAA 108601 || ||||| || || |||||||||||||| || | |||||||||||||| ||||| ||| Sbjct 240 TCACTGACGCCTGAGCAGCAGCGCGACGTAATTACCCGTACCTTTACTGAAAGTCTTTAA 181 >seq222524 Length=8439 Score = 190 bits (210), Expect = 2e-43 Identities = 150/180 (83%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 108422 GGTGGTCAACACCTGAACGTTAACGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 108481 || ||||| || |||||||| ||||| ||| | |||||||| |||||||| || || ||| Sbjct 4204 GGCGGTCAGCATCTGAACGTCAACGTCCTGAGCCGTGAAACGCTGGAAGAGGCGGTGAAG 4145 Query 108482 CATCCGGAAAAATATCCTCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 108541 || ||||| |||||||| ||||||||||| || || ||||||||||| || || |||||| Sbjct 4144 CACCCGGAGAAATATCCGCAGCTGACCATTCGCGTTTCCGGTTATGCCGTGCGTTTTAAC 4085 Query 108542 TCTCTGACTCCAGAACAGCAGCGCGACGTTATCGCTCGTACCTTTACTGAGAGTCTATAA 108601 ||| |||| |||||||||||||| ||||| || | |||||||||||||| || || ||| Sbjct 4084 TCTTTGACGCCAGAACAGCAGCGTGACGTGATTACGCGTACCTTTACTGAAAGCCTTTAA 4025 >seq1462 Length=4781 Score = 163 bits (180), Expect = 3e-35 Identities = 317/467 (68%), Gaps = 1/467 (0%) Strand=Plus/Plus Query 27211 TCGTTTTTATGATGCCGTTTCTACTCATCAAGTTTCATTGCCTACTCCAATTATGGCAGG 27270 ||| |||||||||||||| || || | || |||| || ||||| ||||| ||||| || Sbjct 999 TCGCTTTTATGATGCCGTGTCGACCTTTAAAATTTCCTTACCTACGCCAATCATGGCTGG 1058 Query 27271 TGCTCGTACTCCAACTCGCCAGTTCTCTAGTTGTGTAGTTATTGAAGCCGGTGATTCGTT 27330 | || || || |||||||| ||| || || |||| || || ||| || Sbjct 1059 GGTACGGACGCCGACTCGCCAATTCAGCTCATGCGTGCTTATCGAGTGTGGCGATAGCTT 1118 Query 27331 AAAATCTATTAACAAAACTTCAGCATCAATTATTGAATATATTTCTAAACGAGCTGGTAT 27390 | | ||||| ||| ||||| | || || |||| |||| |||| || || || Sbjct 1119 AGACTCTATCAACGCCACTTCTAGTGCTATCGTTAAATACGTTTCACAACGCGCAGGGAT 1178 Query 27391 AGGTATCAACGTTGGTATGCTTCGTGCAGAAGGTTCTAAGATCGGTATGGGTGAAGTTCG 27450 |||||||| | ||| ||||||| ||| ||| || ||||||| | Sbjct 1179 CGGTATCAATGCTGGCCGTATTCGTGCGCTAGGCAGCCCAATCCGTGGTGGTGAAGCTTT 1238 Query 27451 ACATACGGGTGTTATTCCATTCTGGAAACATTTCCAAACTGCAGTAAAATCTTGTTCTCA 27510 ||||| ||| ||| || |||| ||||| ||||| || || || |||||||| || || Sbjct 1239 CCATACCGGTTGTATCCCGTTCTACAAACACTTCCAGACGGCCGTGAAATCTTGCTCGCA 1298 Query 27511 AGGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTATCCGATGTGGCACTTAGAAGTAGA 27570 ||| || | || || ||||| || ||| || ||| || ||||||||||| ||| | || Sbjct 1299 AGGCGGCGTACGCGGGGGTGCCGCGACACTGTTTTACCCTATGTGGCACTTGGAAATTGA 1358 Query 27571 GAACCTATTAGTTCTGAAAAATAATAAAGGTGTGGATGAAAACCGTATTCGACATATGGA 27630 | | ||||||| ||||||||||| ||||| || | |||||| | || || | || Sbjct 1359 AAGCTTATTAGTCCTGAAAAATAACCGTGGTGTTGAAGGTAACCGTGTCCGTCACCTAGA 1418 Query 27631 CTACGGAATTCAGATTAATGACCTTATGATGGAACGCCTTGGTAAAA 27677 ||||| | || || || | || ||| |||| | |||||||| Sbjct 1419 TTACGGCGTACAAATCAACAAACTCATGTATCAACGTC-TGGTAAAA 1464 >seq65234 Length=1614 Score = 159 bits (176), Expect = 4e-34 Identities = 292/425 (69%), Gaps = 12/425 (3%) Strand=Plus/Minus Query 27194 CGTTTGAAACATATTATTCGTTTTTATGATGCCGTTTCTACTCATCAAGTTTCATTGCCT 27253 ||| |||| ||||| || |||||| |||| |||| ||| | || | || | || Sbjct 1113 CGTATGAATTATATTCAGCGCTTTTATAATGCAATTTCCACTTTTAAAATATCTCTACCC 1054 Query 27254 ACTCCAATTATGGCAGGTGCTCGTACTCCAACTCGCCAGTTCTCTAGTTGTGTAGTTATT 27313 || || |||||| |||| | | || |||||||| || || | |||||| | ||| Sbjct 1053 ACACCGATTATGTCAGGAGTAAGAACACCAACTCGTCAATTTAGTTCTTGTGTGTTAATT 994 Query 27314 GAAGCCGGTGATTCGTTAAAATCTATTAAC---AAAACTTCAGCATCAATTATTGAATAT 27370 ||| | ||| ||||| |||||||| | |||| ||| ||| | ||||| Sbjct 993 GAATGTGCAGATAATTTAAACTCTATTAATGCTACAACTAGTGCA---ATTGTAAAATAT 937 Query 27371 ATTTCTAAACGAGCTGGTATAGGTATCAACGTTGGTATGCTTCGTGC---AGAAGGTTCT 27427 ||||| ||||||| || ||||| || |||| |||| |||| || || | || || Sbjct 936 GTTTCTCAACGAGCAGGAATAGGCATTAACGCTGGTCAAATTCGAGCTTTAGGAAGTCCT 877 Query 27428 AAGATCGGTATGGGTGAAGTTCGACATACGGGTGTTATTCCATTCTGGAAACATTTCCAA 27487 | || | | || |||| ||||| || |||||| || | ||||| |||||| Sbjct 876 A---TCAGAAATGGAGAAGCATTTCATACCGGATGTATTCCTTTTTATAAACACTTCCAA 820 Query 27488 ACTGCAGTAAAATCTTGTTCTCAAGGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTAT 27547 | |||||||||||||||||||||||||| || | || || || || || | | ||| Sbjct 819 AGCGCAGTAAAATCTTGTTCTCAAGGTGGAGTTAGAGGAGGGGCCGCAACTGTTTTTTAC 760 Query 27548 CCGATGTGGCACTTAGAAGTAGAGAACCTATTAGTTCTGAAAAATAATAAAGGTGTGGAT 27607 || || ||||| ||||| | || || |||||||| | |||||||||| ||| | || Sbjct 759 CCAATATGGCATCTAGAAATTGAAAATTTATTAGTTTTAAAAAATAATAGAGGAATTGAA 700 Query 27608 GAAAA 27612 ||||| Sbjct 699 GAAAA 695 >seq209331 Length=9407 Score = 127 bits (140), Expect = 2e-24 Identities = 129/168 (77%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 108422 GGTGGTCAACACCTGAACGTTAACGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 108481 || ||||| ||||| |||||||||||| || ||||||| ||| || || | | Sbjct 482 GGCGGTCAGCACCTCAACGTTAACGTTATGAACCGTGAAATGCTGCTGGACGCGATGGAA 423 Query 108482 CATCCGGAAAAATATCCTCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 108541 ||||| || |||||||| ||||||||||| || || |||||||| || || ||||||||| Sbjct 422 CATCCAGAGAAATATCCGCAGCTGACCATTCGCGTTTCCGGTTACGCGGTCCGCTTTAAC 363 Query 108542 TCTCTGACTCCAGAACAGCAGCGCGACGTTATCGCTCGTACCTTTACT 108589 || |||||| ||||||||||| || || || | || ||||| ||| Sbjct 362 TCACTGACTAAAGAACAGCAGCAGGATGTGATTACCCGAACCTTCACT 315 >seq213894 Length=28734 Score = 114 bits (126), Expect = 1e-20 Identities = 129/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 108422 GGTGGTCAACACCTGAACGTTAACGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 108481 || ||||| ||||| ||||| ||||| || ||||||| ||| || || | | Sbjct 8810 GGGGGTCAGCACCTCAACGTCAACGTGATGAACCGTGAAATGCTGCTGGAAGCGATGGAA 8869 Query 108482 CATCCGGAAAAATATCCTCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 108541 | |||||||||||||| ||| | ||||| || || || || ||||| || ||||| ||| Sbjct 8870 GACCCGGAAAAATATCCGCAGTTAACCATTCGCGTGTCGGGCTATGCGGTACGCTTCAAC 8929 Query 108542 TCTCTGACTCCAGAACAGCAGCGCGACGTTATCGCTCGTACCTTTACTGAGAG 108594 || |||||| ||||||||||| || || ||| | |||||||| ||| |||| Sbjct 8930 TCGCTGACTAAAGAACAGCAGCAGGATGTGATCACCCGTACCTTCACTCAGAG 8982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537768709405280