Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_024139.1 Length=108483 Score E Sequences producing significant alignments: (Bits) Value seq209331 113 3e-20 seq213894 111 1e-19 seq79071 111 1e-19 >seq209331 Length=9407 Score = 113 bits (124), Expect = 3e-20 Identities = 137/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 27340 ATTACATCGCCTGAGTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGAGTCAGTG 27399 |||||| | | ||| || || || |||| || || | ||| ||||| |||||||| Sbjct 302 ATTACAGTGATTTAGTGAAGGTTCGGGTAATCACATCCTGCTGCTGTTCTTTAGTCAGTG 361 Query 27400 CATTAAATCGAACAGCGTAGCCAGAGACACGGATGGTCAACTGAGGATATTTTTCAGGAT 27459 ||||| || || ||||| || || || || ||||||| ||| |||||||| || |||| Sbjct 362 AGTTAAAGCGGACCGCGTAACCGGAAACGCGAATGGTCAGCTGCGGATATTTCTCTGGAT 421 Query 27460 GTTTCTGCGCATCCAAAAGCTGATCACGGCTTAACACATTGACATTTAGGTGCTGACCAC 27519 ||| | ||| |||| ||| |||||| | | || || || || ||||||||||| | Sbjct 422 GTTCCATCGCGTCCAGCAGCATTTCACGGTTCATAACGTTAACGTTGAGGTGCTGACCGC 481 Query 27520 CTTCGAT 27526 ||||||| Sbjct 482 CTTCGAT 488 >seq213894 Length=28734 Score = 111 bits (122), Expect = 1e-19 Identities = 136/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 27341 TTACATCGCCTGAGTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGAGTCAGTGC 27400 |||||| |||||| || ||||| | || || || | ||| ||||| |||||| | Sbjct 8989 TTACATGCTCTGAGTGAAGGTACGGGTGATCACATCCTGCTGCTGTTCTTTAGTCAGCGA 8930 Query 27401 ATTAAATCGAACAGCGTAGCCAGAGACACGGATGGTCAACTGAGGATATTTTTCAGGATG 27460 || || || || || ||||| || || || ||||| ||||| ||||||||||| || | Sbjct 8929 GTTGAAGCGTACCGCATAGCCCGACACGCGAATGGTTAACTGCGGATATTTTTCCGGGTC 8870 Query 27461 TTTCTGCGCATCCAAAAGCTGATCACGGCTTAACACATTGACATTTAGGTGCTGACCACC 27520 || | ||| |||| ||| |||||| | | ||| ||||| || ||||||||||| || Sbjct 8869 TTCCATCGCTTCCAGCAGCATTTCACGGTTCATCACGTTGACGTTGAGGTGCTGACCCCC 8810 Query 27521 TTCGAT 27526 ||| || Sbjct 8809 TTCAAT 8804 >seq79071 Length=852 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 27353 AGTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGAGTCAGTGCATTAAATCGAAC 27412 |||||| ||||| |||| |||||| ||| || ||| | ||||||| ||||| || || Sbjct 193 AGTAAAGGTACGGGTAATTACGTCGCGCTGCTGCTCAGGCGTCAGTGAGTTAAAACGCAC 252 Query 27413 AGCGTAGCCAGAGACACGGATGGTCAACTGAGGATATTTTTCAGGATGTTTCTGCGCATC 27472 || ||||| || |||||||| |||| ||| ||||| |||||||||||||| ||||| Sbjct 253 GGCATAGCCTGAAACACGGATAGTCAGCTGCGGATAGTTTTCAGGATGTTTAACTGCATC 312 Query 27473 CAAAAGCTGATCACGGCTTAACACATTGACATTTAGGTGCTGACCACCTTC------GAT 27526 ||| || || | | || ||||| || || ||||| |||||||| | Sbjct 313 TTCCAGCGTTTCGCGACGCAGAACGTTGACGTTCAGATGCTGTCCACCTTCAACACGTAC 372 Query 27527 TTGAGGGGCGACTTCCACCTTAACTTCACGGAAGGC 27562 ||||| || ||| ||| ||||||||||| || Sbjct 373 CTGAGGTTTGATTTCAACCGGCACTTCACGGAAAGC 408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 344909436637164