Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_024360.1 Length=138036 Score E Sequences producing significant alignments: (Bits) Value seq46653 179 3e-40 seq481313 150 2e-31 seq342286 87.8 2e-12 >seq46653 Length=1539 Score = 179 bits (198), Expect = 3e-40 Identities = 601/929 (65%), Gaps = 6/929 (1%) Strand=Plus/Plus Query 104798 TATCCGTCTTTCTATCGAGCTTACAAGGAGTTAACTACAAATTACTGGTTGCCCGATGAG 104857 || ||||| |||||||| || |||||||| | | || || | |||| | || || ||| Sbjct 3 TACCCGTCGTTCTATCGCGCCTACAAGGAACTCTCGACCAACTTCTGGATTCCGGACGAG 62 Query 104858 GTAGATATGAAGAGTGATGCCAAACAGTACAACCACTTACCCGAAGAAGAGAAGTATGCG 104917 || || |||||| | || ||||| |||||| | | | | | |||||| | || Sbjct 63 GTCGACATGAAGGGCGACGCCAAGCAGTACGGCGAGCTCTCGGCGCGCGAGAAGAACGCC 122 Query 104918 TTTGATTCCATTATTGGACTTTTAGCTACACTTGACTCACCTCAAACACGTTTTATTTAT 104977 | || ||||| || || || | || || || || || || || || ||||| || || Sbjct 123 TACGACTCCATCATCGGCCTGCTCGCCACGCTGGATTCGCCGCAGACGCGTTTCATCTAC 182 Query 104978 AATATCGCAGAATATGTCAGTGATGCCTCTGTTCATGCTATTACTGCTATCATTGCACAA 105037 || |||| ||||| ||| || | | | || || | | | || ||||| | || Sbjct 183 AACGTCGCCGAATACATCACCGACCCGGCCGCGCACGCCAATGCCGCGATCATCGGCCAG 242 Query 105038 CAAGAAGCTATTCATAACGAAAGCTACTCTTATGTACTTGCTTCTATTACTAACTTACAG 105097 || |||| || || ||||| |||||| || || || || || || || | | Sbjct 243 CAGGAAGTGATCCACAACGAGAGCTACAGCTACGTGCTGGCCTCGATCACCGGCCTGGCC 302 Query 105098 GAGCAGAATCGAGTATTTGAGGAAGCTAGAACACACCCTACGATTATTAAACGTAATGCA 105157 || ||||| || || || || || | || ||||| ||||| || || || Sbjct 303 GACCAGAACCGCGTGTTCGAACTCGCGCGCACGCACCCCACGATCATCGCGCGCAACCAG 362 Query 105158 CCTATTATGGAGTCTTATGACGATTTCATGAATAATAAAACACCTGAGAATATGGTAAAA 105217 || || ||| || || ||||| |||||| | || | | |||| || | Sbjct 363 CCGATCATGACCTCGTACGACGACTTCATGCGCGAGAAGTCCGCCGAGACGCTGATCCGC 422 Query 105218 GCTTTAGTACAATCATCTATCTTAGAGGGTATTAATTTCTACAGCGGTTTTGCTTACTTC 105277 | | | || || || ||| | || || || || |||||| ||| || || |||||| Sbjct 423 TCGCTGATCCAGTCGTCGATCCTGGAAGGCATCAACTTCTACTCCGGCTTCGCCTACTTC 482 Query 105278 TATAACCTCGTTCGTCAAAACAAGATGACAGGGACAGGTAAAATCATCAGCTTCATTAAT 105337 || ||||| || || || ||| |||||| || || || || |||||||||||||| || Sbjct 483 TACAACCTGGTCCGCCAGAACCGGATGACCGGCACCGGCAAGATCATCAGCTTCATCAAC 542 Query 105338 CGTGATGAGTTAGCCCATTCGAAGTTTATTTCTGAGCTAATTAGAGCTATTGTAGGGGAA 105397 || || ||| | || ||||| ||||| || || || || | || || | || || Sbjct 543 CGCGACGAGCTGGCGCATTCCAAGTTCATCAGCGAACTGATCCGCGCGATCATCGGCGAG 602 Query 105398 AACCCTGAACTACAAACAGATGAACTAAATGACTACGTATATGCTTCTTTTAGACATGCT 105457 |||| || || || || || | || |||||| | | | || || || Sbjct 603 AACCAGAGCCTGCAGGGCGACGAGCTCACCGAGTACGTACACACCGCGTTCGAGCACGCG 662 Query 105458 GTAGAGCTAGAACAAGC-ATGGTCTAGTGAGGTACTACAGGGCATTGAAGGAATTGATGT 105516 | ||||| ||| | || ||| | |||||| || | ||||| || || || || || Sbjct 663 ATCGAGCTGGAA-ACGCGCTGGACGGCTGAGGTGCTCGACGGCATCGACGGCATCGACGT 721 Query 105517 GGAAGAAATGTTAGACTATGTAAAATATCGCGCTAATAAAATGTTAGGGATGCTAGG--T 105574 || || ||| | ||| || || || ||||| || || ||| || ||||| || | Sbjct 722 CGACGAGATGGTCCGCTACGTGAAGTACCGCGCCAACAAGATGGCCGGCATGCTCGGCAT 781 Query 105575 CTCCAACCAATGTATCAAGGTCACACAGAAAATTCTATGACATGGATTAAAGCTTACGCC 105634 | || | | | | | ||| || || || ||| | ||||| || || ||||| Sbjct 782 CGAGAAGCTCTACAGCGA-GTCGAAC-GAGAACGTGATGCCGTGGATCAAGGCGTACGCG 839 Query 105635 GATAACTTTACAGAAACAAAAACCGATTTTTTCGAAATGCGTAACTCTAGTTACAAGAAA 105694 || ||||| || || || || || || || ||||| ||||| || | ||||||||| Sbjct 840 GACAACTTCACCGAGACGAAGACGGACTTCTTCGAGATGCGGAATGCGTCTTACAAGAAG 899 Query 105695 ACAAACTTAGACAATGGGTTCGATGACTT 105723 || |||| || || |||||||| ||||| Sbjct 900 ACGAACTCGGATAACGGGTTCGACGACTT 928 >seq481313 Length=471 Score = 150 bits (166), Expect = 2e-31 Identities = 309/454 (68%), Gaps = 4/454 (1%) Strand=Plus/Minus Query 105227 CAATCATCTATCTTAGAGGGTATTAATTTCTACAGCGGTTTTGCTTACTTCTATAACCTC 105286 || ||||| ||| | || || || || ||||| ||| ||||| |||||||| ||| | Sbjct 453 CAGTCATCCATCCTGGAAGGCATCAACTTCTATTCCGGCTTTGCGTACTTCTACAACATG 394 Query 105287 GTTCGTCAAAACAAGATGACAGGGACAGGTAAAATCATCAGCTTCATTAATCGTGATGAG 105346 || || || ||| ||||| || || || || |||||||||||||| || || |||||| Sbjct 393 GTGCGGCAGAACCGCATGACCGGCACCGGCAAGATCATCAGCTTCATCAACCGCGATGAG 334 Query 105347 TTAGCCCATTCGAAGTTTATTTCTGAGCTAATTAGAGCTATTGTAGGGGAAAACCCTGAA 105406 | |||||| | ||||| || || || || | || || | || || ||||| || Sbjct 333 CTGGCCCATACCAAGTTCATCAGCGAACTGATCCGCGCCATCATCGGCGAGAACCCGGAG 274 Query 105407 CTACAAACAGATGAACTAAATGACTACGTATATGCTTCTTTTAGACATGCTGTAGAGCTA 105466 || || || | || || | | |||||| ||| | || ||||| | | ||| Sbjct 273 CTGCAGACCAACGAGCTGACCGCCTACGTGCATGAGGCCTTCGAGCATGCGATCGCGCTG 214 Query 105467 GAACAAGCA-TGGTCTAGTGAGGTACTACAGGGCATTGAAGGAATTGATGTGGAAGAAAT 105525 ||| | || ||||| || || || | ||||| || || || || ||||| || || Sbjct 213 GAA-ATCCAGTGGTCGTCGGAAGTGCTCGATGGCATCGACGGCATCGACGTGGAGGAGAT 155 Query 105526 GTTAGACTATGTAAAATATCGCGCTAATAAAATGTTAGGGATGCTAGGTCTCCAACCAAT 105585 | | ||| || || || ||||| || || ||| || ||||| || || | | | Sbjct 154 GGTGCGCTACGTGAAGTACCGCGCCAACAAGATGGCCGGCATGCTCGGCATCGAGCGCCT 95 Query 105586 GTATCAAGGTCA-CACAGAAAATTCTATGACATGGATTAAAGCTTACGCCGATAACTTTA 105644 ||| || | || ||| || || ||| ||||||| || || |||||||| ||||| | Sbjct 94 GTA-CAGCGACACCACCGACAACGTGATGCCATGGATCAAGGCCTACGCCGACAACTTCA 36 Query 105645 CAGAAACAAAAACCGATTTTTTCGAAATGCGTAA 105678 | || || || ||||| || ||||| ||||| || Sbjct 35 CCGAGACCAAGACCGACTTCTTCGAGATGCGCAA 2 >seq342286 Length=214 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 105174 ATGACGATTTCATGAATAATAAAACACCTGAGAATATGGTAAAAGCTTTAGTACAATCAT 105233 |||||||||||||| | || || | || | || | || | || | || || | Sbjct 214 ATGACGATTTCATGCGCGAGAAGACTGCCGAAACCCTGCTGAAGTCGTTGATCCAGTCCT 155 Query 105234 CTATCTTAGAGGGTATTAATTTCTACAGCGGTTTTGCTTACTTCTATAACCTCGTTCGTC 105293 | ||| | || || || || ||||| |||||| || |||||||| ||| | || || | Sbjct 154 CGATCCTGGAAGGCATCAACTTCTATTCCGGTTTCGCGTACTTCTACAACATGGTGCGGC 95 Query 105294 AAAACAAGATGACAGGGACAGGTAAAATCATCAGCTTCATTAATCGTGATGAGTTAGCCC 105353 | ||| |||| || || || || |||||||||||||| || ||||||||| | |||| Sbjct 94 AGAACCGCATGAACGGCACCGGCAAGATCATCAGCTTCATCAACCGTGATGAGCTGGCCC 35 Query 105354 ATTCGAAGTTTAT 105366 | | ||||| || Sbjct 34 ACACCAAGTTCAT 22 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 438831579955360