Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_024365.1 Length=51090 Score E Sequences producing significant alignments: (Bits) Value seq149265 125 2e-24 seq194023 113 1e-20 seq201909 109 2e-19 >seq149265 Length=2172 Score = 125 bits (138), Expect = 2e-24 Identities = 206/291 (71%), Gaps = 6/291 (2%) Strand=Plus/Plus Query 20036 GATCATCCGCTTACCAAAAGCAGATGGGGAATTCGTGACGTGCTCGCCCGA-AAGCGCCT 20094 |||||| || ||||| || | ||| || ||||||||||| ||||| | || | Sbjct 1424 GATCATGCGTTTACCGAACCCCTCCGGGCGGTTAGTGACGTGCTCACCCGACAGGCTGCG 1483 Query 20095 GAAATATCCCGTCAACTCGTTCGGCAAAGAACTTCGTGCGAGCCGCA--AGCAACTCACT 20152 |||| ||||||||||| || || | |||||| ||| || ||| | |||| |||||| Sbjct 1484 GAAA-ATCCCGTCAACGCGCTCAGAAAAGAATTTC-TG-AAGCGAAAACAGCAGCTCACT 1540 Query 20153 CAAGGTTGCGCGCACCGTGCTTTCTTCAAAGTCCGGCGCTTTGTGCTCGCGAATCTGCTC 20212 || |||||| || || ||| || |||||||| |||||||| |||||| ||||| || Sbjct 1541 CAGGGTTGCCCGGACGGTGGCCTCATCAAAGTCTGGCGCTTTCATCTCGCGGATCTGGTC 1600 Query 20213 ATTCCATTCGTTCCGGCGCTTCTGAGGCATTGCGTCGTAAACGTCTGTCAGGGCCAAGGC 20272 ||||| ||||| ||||||| | ||||| || || ||||| || || |||| || Sbjct 1601 GTTCCACTCGTTGCGGCGCTCGTTTGGCATGTACTCATAGACGTCCGTTAGCGCCAGCGC 1660 Query 20273 CTCGCCCCAATATGACGAGTTGAGAGACGCTATAGCGCCTGGCAGCTGGAA 20323 | |||| ||| || || || || || | || || |||||| ||| Sbjct 1661 GCTGGCCCAGTATTCCGCATTCAGCGAGGCAACCGCCCCCTGCAGCTCGAA 1711 >seq194023 Length=5833 Score = 113 bits (124), Expect = 1e-20 Identities = 167/235 (71%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 32486 CGTGAAATCGCCGATCTGACTGGCAAGCGCCACCCTGATGTGAAGCGTGACATTCAGTCC 32545 || ||||| || || ||||| || ||||| ||||| ||||| || |||||||| | Sbjct 1924 CGAGAAATTGCAGAACTGACCGGGAAGCGGCACCCGGATGTTAAACGTGACATCGAAGTG 1865 Query 32546 ATGGCGTCAGAGCTTCAAGAAGATGTGAGCAGCTTTGCGCACATCTATCTGGACAGCATG 32605 ||| | | |||| || ||||||||||||| |||||||| | ||||| |||| ||| Sbjct 1864 ATGATGACTCAGCTCCAGGAAGATGTGAGCAAATTTGCGCATACCTATCAGGACGCGATG 1805 Query 32606 AACCGGCAACAGACCGAATACTTGCTCGACCGGGAGCATACCGACTGCCTCCTCACAGGC 32665 || || ||||| || || |||||||| || || || || ||||| | || || Sbjct 1804 AATCGTAGCCAGACTGAGTATGCACTCGACCGTGAACACACTGAATGCCTTGTTACCGGG 1745 Query 32666 TACAGCGC--TGCAATGCGCATGGCTGTGATCAGGCGCTGGCGTGAGCTGGAAGG 32718 |||| ||| ||| |||| ||| || |||| |||| | |||| ||||||| Sbjct 1744 TACAACGCCATGC--TGCGTATGAAGGTCATCAAGCGCCTACATGAGTTGGAAGG 1692 >seq201909 Length=21394 Score = 109 bits (120), Expect = 2e-19 Identities = 164/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 32486 CGTGAAATCGCCGATCTGACTGGCAAGCGCCACCCTGATGTGAAGCGTGACATTCAGTCC 32545 || ||||| || | ||||| || ||||| ||||| ||||| || |||||||| | Sbjct 13345 CGAGAAATTGCAAAACTGACCGGAAAGCGGCACCCGGATGTTAAACGTGACATCGAAGTG 13286 Query 32546 ATGGCGTCAGAGCTTCAAGAAGATGTGAGCAGCTTTGCGCACATCTATCTGGACAGCATG 32605 ||| | |||| || ||||||||||||| ||| |||||| ||||| |||| |||| Sbjct 13285 ATGATGGTTCAGCTCCAGGAAGATGTGAGCAAATTTTCGCACACCTATCAGGACGCCATG 13226 Query 32606 AACCGGCAACAGACCGAATACTTGCTCGACCGGGAGCATACCGACTGCCTCCTCACAGGC 32665 || || ||||| || || |||||||| || || ||||| ||||| | || || Sbjct 13225 AATCGTAGTCAGACTGAGTATGCACTCGACCGTGAACACACCGAATGCCTGGTGACCGGA 13166 Query 32666 TACAGCGCTGCAATGCGCATGGCTGTGATCAGGCGCTGGCGTGAGCTGGAAGG 32718 || | ||| |||| ||| || || | |||| || |||||||||||| Sbjct 13165 TATAACGCCATGTTGCGTATGAAGGTCATAAAGCGCCTGCATGAGCTGGAAGG 13113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 162397923241304