Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_024369.2 Length=41569 Score E Sequences producing significant alignments: (Bits) Value seq153502 170 5e-38 seq497144 165 2e-36 seq136258 147 6e-31 seq226697 100 8e-17 seq400249 89.7 1e-13 >seq153502 Length=4143 Score = 170 bits (188), Expect = 5e-38 Identities = 189/252 (75%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 38193 AATGGCAAGCAGAGGTGTAAACAAGGTGATCTTAATTGGTCACCTTGGTCAAGATCCAGA 38252 |||||| || | || |||||||| ||||| | | ||| | | |||||||||||||| Sbjct 2267 AATGGCCAGTCGCGGCGTAAACAAAGTGATTCTTGTCGGTAATTTGGGTCAAGATCCAGA 2208 Query 38253 GGTGCGCTATCTACCAAGCGGCGGCGCAGTGGCAAACATCACAATAGCAACGTCTGAGGT 38312 || || ||| | |||| || || || ||| ||||||| ||| | ||||| ||||| Sbjct 2207 AGTCCGGTATATGCCAAATGGAGGGGCTGTGACAAACATTACACTGGCAACCTCTGAAAG 2148 Query 38313 TTGGCGGGATAAGCAAACCGGACAGCCAAAAGAGAAAACAGAGTGGCACCGAGTTACTTT 38372 ||||| |||||||||||||| | ||||||| || || |||||||| ||| || Sbjct 2147 CTGGCGTGATAAGCAAACCGGTGAAAATAAAGAGATTACTGAATGGCACCGTGTTGTGTT 2088 Query 38373 GTTTGGGAAGCTGGCTGAAGTTGCTGGCGAATACCTTCGAAAAGGATCTCATGTTTATAT 38432 ||| || || | || ||||||||||||||||| || || ||||| ||||| |||||||| Sbjct 2087 GTTCGGTAAATTAGCAGAAGTTGCTGGCGAATATCTGCGTAAAGGCTCTCAGGTTTATAT 2028 Query 38433 TGAAGGCCAGCT 38444 ||||| || || Sbjct 2027 CGAAGGTCAACT 2016 >seq497144 Length=1636 Score = 165 bits (182), Expect = 2e-36 Identities = 184/246 (75%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 38194 ATGGCAAGCAGAGGTGTAAACAAGGTGATCTTAATTGGTCACCTTGGTCAAGATCCAGAG 38253 ||||| |||||||| |||||||| || || ||| | || | || || || || || || Sbjct 1107 ATGGCCAGCAGAGGCGTAAACAAAGTAATTTTAGTCGGAAATCTGGGGCAGGACCCGGAA 1166 Query 38254 GTGCGCTATCTACCAAGCGGCGGCGCAGTGGCAAACATCACAATAGCAACGTCTGAGGTT 38313 || ||||| | || | ||||| || || || |||||||| | || || || || Sbjct 1167 GTTCGCTACATGCCGAATGGCGGTGCCGTTGCCAACATCACTCTGGCTACCTCCGAATCC 1226 Query 38314 TGGCGGGATAAGCAAACCGGACAGCCAAAAGAGAAAACAGAGTGGCACCGAGTTACTTTG 38373 ||||| || ||||| ||||| | | ||||||||||| || |||||||| ||| || Sbjct 1227 TGGCGCGACAAGCAGACCGGCGAAACCAAAGAGAAAACTGAATGGCACCGCGTTGTGCTG 1286 Query 38374 TTTGGGAAGCTGGCTGAAGTTGCTGGCGAATACCTTCGAAAAGGATCTCATGTTTATATT 38433 || || |||||||||||||| || || |||||||| || ||||| ||||| |||||||| Sbjct 1287 TTCGGCAAGCTGGCTGAAGTGGCCGGTGAATACCTGCGTAAAGGCTCTCAGGTTTATATC 1346 Query 38434 GAAGGC 38439 |||||| Sbjct 1347 GAAGGC 1352 >seq136258 Length=1331 Score = 147 bits (162), Expect = 6e-31 Identities = 210/296 (71%), Gaps = 0/296 (0%) Strand=Plus/Minus Query 38194 ATGGCAAGCAGAGGTGTAAACAAGGTGATCTTAATTGGTCACCTTGGTCAAGATCCAGAG 38253 ||||| || | || || ||||| ||||| | | || | || ||||| ||||| || Sbjct 360 ATGGCCAGTCGTGGCGTTAACAAAGTGATTCTTGTCGGGAATCTGGGTCAGGATCCGGAA 301 Query 38254 GTGCGCTATCTACCAAGCGGCGGCGCAGTGGCAAACATCACAATAGCAACGTCTGAGGTT 38313 || || ||| | |||| || ||||| || || ||||| || | || ||||| || Sbjct 300 GTACGTTATATGCCAAATGGTGGCGCTGTTGCCAACATTACGCTGGCTACGTCGGAAAGC 241 Query 38314 TGGCGGGATAAGCAAACCGGACAGCCAAAAGAGAAAACAGAGTGGCACCGAGTTACTTTG 38373 ||||| || ||||| ||||| | ||||||| || || |||||||| || | || Sbjct 240 TGGCGCGACAAGCAGACCGGTGAAAACAAAGAGATCACTGAATGGCACCGTGTGGTTCTG 181 Query 38374 TTTGGGAAGCTGGCTGAAGTTGCTGGCGAATACCTTCGAAAAGGATCTCATGTTTATATT 38433 ||||| || ||||||||||| || || |||||||| |||||| || || || ||||| Sbjct 180 TTTGGCAAACTGGCTGAAGTCGCGGGTGAATACCTGAAAAAAGGGTCGCAGGTCTATATC 121 Query 38434 GAAGGCCAGCTTGAAACTAAGAAGTGGCGGGATCAAAGCGGTCAGGACCGATACAC 38489 ||||||||||| || || |||| |||||| | || ||||| || ||||| Sbjct 120 GAAGGCCAGCTGCGCACCCGTAAATGGCAGGATCAGGGTGGCCAGGAGCGTTACAC 65 >seq226697 Length=878 Score = 100 bits (110), Expect = 8e-17 Identities = 121/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 38341 AAAGAGAAAACAGAGTGGCACCGAGTTACTTTGTTTGGGAAGCTGGCTGAAGTTGCTGGC 38400 |||||||||||||| ||||| || | || ||||| || |||||||| ||||||| Sbjct 846 AAAGAGAAAACAGAATGGCATAGAATAGTATTATTTGGAAAATTGGCTGAAATTGCTGGA 787 Query 38401 GAATACCTTCGAAAAGGATCTCATGTTTATATTGAAGGCCAGCTTGAAACTAAGAAGTGG 38460 ||||| | ||||||| ||||| || ||||||||||| ||| |||||| || ||| Sbjct 786 GAATATTTGAGAAAAGGTTCTCAAGTATATATTGAAGGATCCCTTCAAACTAGAAAATGG 727 Query 38461 CGGGATCAAAGCGGTCAGGACCGATACACAATAGGCATTGTGGTT 38505 | || |||| |||| || || || |||| || ||| | ||| Sbjct 726 CAAGACCAAAATGGTCTTGAACGTTATACAACAGAAATTATAGTT 682 >seq400249 Length=241 Score = 89.7 bits (98), Expect = 1e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 38194 ATGGCAAGCAGAGGTGTAAACAAGGTGATCTTAATTGGTCACCTTGGTCAAGATCCAGAG 38253 |||||||| ||||||||||| || || ||||||||||||||| | || |||||||| || Sbjct 157 ATGGCAAGTAGAGGTGTAAATAAAGTAATCTTAATTGGTCACTTAGGCCAAGATCCTGAA 98 Query 38254 GTGCGCTATCTACCAAGCGGCGGCGCAGTGGCAAACATCACAATAGCAACGTCTGAG 38310 || || ||| | |||| || ||||| | ||| || ||| | ||||| || ||| Sbjct 97 GTTCGTTATATGCCAAATGGTAATGCAGTAGTAAATATGACACTTGCAACTTCAGAG 41 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132111340400662