Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_024383.1 Length=135831 Score E Sequences producing significant alignments: (Bits) Value seq46653 179 3e-40 seq481313 134 1e-26 >seq46653 Length=1539 Score = 179 bits (198), Expect = 3e-40 Identities = 601/929 (65%), Gaps = 6/929 (1%) Strand=Plus/Plus Query 96235 TATCCGTCTTTCTATCGAGCTTACAAAGAGTTAACTACAAATTACTGGTTGCCTGATGAG 96294 || ||||| |||||||| || ||||| || | | || || | |||| | || || ||| Sbjct 3 TACCCGTCGTTCTATCGCGCCTACAAGGAACTCTCGACCAACTTCTGGATTCCGGACGAG 62 Query 96295 GTAGATATGAAGAGCGATGCCAAACAGTACAACCACTTATCCGAAGAAGAGAAGTATGCG 96354 || || |||||| |||| ||||| |||||| | | | || | |||||| | || Sbjct 63 GTCGACATGAAGGGCGACGCCAAGCAGTACGGCGAGCTCTCGGCGCGCGAGAAGAACGCC 122 Query 96355 TTTGACTCCATTATCGGACTTTTAGCTACACTTGACTCACCCCAAACACGTTTTATTTAT 96414 | |||||||| ||||| || | || || || || || || || || ||||| || || Sbjct 123 TACGACTCCATCATCGGCCTGCTCGCCACGCTGGATTCGCCGCAGACGCGTTTCATCTAC 182 Query 96415 AATATCGCAGAGTATGTCAGTGATGCCTCCGTTCATGCTATTACAGCTATCATTGCACAA 96474 || |||| || || ||| || | ||| || || | | | || ||||| | || Sbjct 183 AACGTCGCCGAATACATCACCGACCCGGCCGCGCACGCCAATGCCGCGATCATCGGCCAG 242 Query 96475 CAAGAAGCTATTCATAATGAGAGTTATTCTTATGTACTTGCTTCTATTACTAACTTACAA 96534 || |||| || || || ||||| || || || || || || || || | | Sbjct 243 CAGGAAGTGATCCACAACGAGAGCTACAGCTACGTGCTGGCCTCGATCACCGGCCTGGCC 302 Query 96535 GAGCAGAATCGAGTATTTGAGGAAGCTAGAACACACCCTACGATTATTAAACGTAATGCA 96594 || ||||| || || || || || | || ||||| ||||| || || || Sbjct 303 GACCAGAACCGCGTGTTCGAACTCGCGCGCACGCACCCCACGATCATCGCGCGCAACCAG 362 Query 96595 CCTATTATGAAGTCTTATGACGATTTCATGAATAACAAAACACCTGAGAATATGGTAAAA 96654 || || |||| || || ||||| |||||| | || | | |||| || | Sbjct 363 CCGATCATGACCTCGTACGACGACTTCATGCGCGAGAAGTCCGCCGAGACGCTGATCCGC 422 Query 96655 GCTTTAGTACAATCATCTATCTTAGAGGGTATTAATTTCTACAGCGGTTTTGCTTACTTC 96714 | | | || || || ||| | || || || || |||||| ||| || || |||||| Sbjct 423 TCGCTGATCCAGTCGTCGATCCTGGAAGGCATCAACTTCTACTCCGGCTTCGCCTACTTC 482 Query 96715 TACAACCTCGTTCGTCAAAACAAGATGACGGGGACAGGTAAAATCATTAGCTTCATTAAT 96774 |||||||| || || || ||| |||||| || || || || ||||| |||||||| || Sbjct 483 TACAACCTGGTCCGCCAGAACCGGATGACCGGCACCGGCAAGATCATCAGCTTCATCAAC 542 Query 96775 CGTGATGAATTAGCCCATTCGAAATTTATTTCTGAGCTAATTAGAGCTATTGTAGGGGAA 96834 || || || | || ||||| || || || || || || | || || | || || Sbjct 543 CGCGACGAGCTGGCGCATTCCAAGTTCATCAGCGAACTGATCCGCGCGATCATCGGCGAG 602 Query 96835 AACCCTGAACTACAAACAGATGAACTAAATGACTACGTGTACGCTTCTTTTAGACATGCC 96894 |||| || || || || || | || ||||| || | | || || || Sbjct 603 AACCAGAGCCTGCAGGGCGACGAGCTCACCGAGTACGTACACACCGCGTTCGAGCACGCG 662 Query 96895 GTAGAGCTAGAACAAGCG-TGGTCTAGTGAGGTACTACAAGGCATTGAAGGAATTGATGT 96953 | ||||| ||| | ||| ||| | |||||| || | ||||| || || || || || Sbjct 663 ATCGAGCTGGAA-ACGCGCTGGACGGCTGAGGTGCTCGACGGCATCGACGGCATCGACGT 721 Query 96954 GGAAGAAATGTTAGACTATGTAAAATATCGTGCTAATAAAATGTTAGGGATGTTAGG--T 97011 || || ||| | ||| || || || || || || || ||| || ||| | || | Sbjct 722 CGACGAGATGGTCCGCTACGTGAAGTACCGCGCCAACAAGATGGCCGGCATGCTCGGCAT 781 Query 97012 CTTCAACCAATGTATCAAGGTCACACAGAAAATTCTATGACATGGATTAAAGCTTACGCC 97071 | || | | | | | ||| || || || ||| | ||||| || || ||||| Sbjct 782 CGAGAAGCTCTACAGCGA-GTCGAAC-GAGAACGTGATGCCGTGGATCAAGGCGTACGCG 839 Query 97072 GATAACTTTACAGAAACAAAAACCGACTTTTTCGAAATGCGTAACTCTAGTTACAAGAAA 97131 || ||||| || || || || || ||||| ||||| ||||| || | ||||||||| Sbjct 840 GACAACTTCACCGAGACGAAGACGGACTTCTTCGAGATGCGGAATGCGTCTTACAAGAAG 899 Query 97132 ACAAACTTAGACAATGGGTTCGATGACTT 97160 || |||| || || |||||||| ||||| Sbjct 900 ACGAACTCGGATAACGGGTTCGACGACTT 928 >seq481313 Length=471 Score = 134 bits (148), Expect = 1e-26 Identities = 303/453 (67%), Gaps = 2/453 (0%) Strand=Plus/Minus Query 96664 CAATCATCTATCTTAGAGGGTATTAATTTCTACAGCGGTTTTGCTTACTTCTACAACCTC 96723 || ||||| ||| | || || || || ||||| ||| ||||| |||||||||||| | Sbjct 453 CAGTCATCCATCCTGGAAGGCATCAACTTCTATTCCGGCTTTGCGTACTTCTACAACATG 394 Query 96724 GTTCGTCAAAACAAGATGACGGGGACAGGTAAAATCATTAGCTTCATTAATCGTGATGAA 96783 || || || ||| ||||| || || || || ||||| |||||||| || || ||||| Sbjct 393 GTGCGGCAGAACCGCATGACCGGCACCGGCAAGATCATCAGCTTCATCAACCGCGATGAG 334 Query 96784 TTAGCCCATTCGAAATTTATTTCTGAGCTAATTAGAGCTATTGTAGGGGAAAACCCTGAA 96843 | |||||| | || || || || || || | || || | || || ||||| || Sbjct 333 CTGGCCCATACCAAGTTCATCAGCGAACTGATCCGCGCCATCATCGGCGAGAACCCGGAG 274 Query 96844 CTACAAACAGATGAACTAAATGACTACGTGTACGCTTCTTTTAGACATGCCGTAGAGCTA 96903 || || || | || || | | ||||||| | | | || ||||| | | ||| Sbjct 273 CTGCAGACCAACGAGCTGACCGCCTACGTGCATGAGGCCTTCGAGCATGCGATCGCGCTG 214 Query 96904 GAACAAGCGTGGTCTAGTGAGGTACTACAAGGCATTGAAGGAATTGATGTGGAAGAAATG 96963 ||| |||||| || || || | ||||| || || || || ||||| || ||| Sbjct 213 GAAATCCAGTGGTCGTCGGAAGTGCTCGATGGCATCGACGGCATCGACGTGGAGGAGATG 154 Query 96964 TTAGACTATGTAAAATATCGTGCTAATAAAATGTTAGGGATGTTAGGTCTTCAACCAATG 97023 | ||| || || || || || || || ||| || ||| | || | | | || Sbjct 153 GTGCGCTACGTGAAGTACCGCGCCAACAAGATGGCCGGCATGCTCGGCATCGAGCGCCTG 94 Query 97024 TATCAAGGTCA-CACAGAAAATTCTATGACATGGATTAAAGCTTACGCCGATAACTTTAC 97082 || || | || ||| || || ||| ||||||| || || |||||||| ||||| || Sbjct 93 TA-CAGCGACACCACCGACAACGTGATGCCATGGATCAAGGCCTACGCCGACAACTTCAC 35 Query 97083 AGAAACAAAAACCGACTTTTTCGAAATGCGTAA 97115 || || || |||||||| ||||| ||||| || Sbjct 34 CGAGACCAAGACCGACTTCTTCGAGATGCGCAA 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 431890581496752