Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_024794.1 Length=167318 Score E Sequences producing significant alignments: (Bits) Value seq79071 212 7e-50 seq222524 181 1e-40 seq1462 181 1e-40 seq65234 141 1e-28 seq209331 125 8e-24 seq213894 120 3e-22 seq260686 91.5 2e-13 >seq79071 Length=852 Score = 212 bits (234), Expect = 7e-50 Identities = 158/185 (85%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 61278 TTATAGACTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGTTGTTCCGGAGTCAGAGA 61337 ||| ||||| |||||||||||||| | || ||||||||||| || || || ||||| || Sbjct 181 TTAAAGACTTTCAGTAAAGGTACGGGTAATTACGTCGCGCTGCTGCTCAGGCGTCAGTGA 240 Query 61338 GTTAAAGCGAACTGCATATCCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATG 61397 |||||| || || ||||| || || |||||||| |||||||||||||| ||||| ||||| Sbjct 241 GTTAAAACGCACGGCATAGCCTGAAACACGGATAGTCAGCTGCGGATAGTTTTCAGGATG 300 Query 61398 CTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACC 61457 ||||||||||||||||| ||||| |||||||||||||| |||||||| || || ||||| Sbjct 301 TTTAACTGCATCTTCCAGCGTTTCGCGACGCAGAACGTTGACGTTCAGATGCTGTCCACC 360 Query 61458 TTCAA 61462 ||||| Sbjct 361 TTCAA 365 >seq222524 Length=8439 Score = 181 bits (200), Expect = 1e-40 Identities = 150/183 (82%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 61278 TTATAGACTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGTTGTTCCGGAGTCAGAGA 61337 ||| || || |||||||||||||| | || ||||| ||||| ||||| || |||| ||| Sbjct 4025 TTAAAGGCTTTCAGTAAAGGTACGCGTAATCACGTCACGCTGCTGTTCTGGCGTCAAAGA 4084 Query 61338 GTTAAAGCGAACTGCATATCCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATG 61397 |||||| || || ||||| ||||| || || |||||||||||||||||||| ||||| || Sbjct 4085 GTTAAAACGCACGGCATAACCGGAAACGCGAATGGTCAGCTGCGGATATTTCTCCGGGTG 4144 Query 61398 CTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACC 61457 ||| || || |||||||| |||||||| | ||| ||||| |||||||| || ||||| || Sbjct 4145 CTTCACCGCCTCTTCCAGCGTTTCACGGCTCAGGACGTTGACGTTCAGATGCTGACCGCC 4204 Query 61458 TTC 61460 || Sbjct 4205 CTC 4207 >seq1462 Length=4781 Score = 181 bits (200), Expect = 1e-40 Identities = 321/467 (69%), Gaps = 1/467 (0%) Strand=Plus/Minus Query 141862 TTTTACCAAGGCGTTCCATCATAAGGTCATTAATCTGAATTCCGTAGTCCATATGTCGAA 141921 |||||||| | |||| ||| || | || || || | ||||| || | || || | Sbjct 1464 TTTTACCA-GACGTTGATACATGAGTTTGTTGATTTGTACGCCGTAATCTAGGTGACGGA 1406 Query 141922 TACGGTTTTCATCCACACCTTTGTTATTTTTCAGAACTAATAGGTTCTCTACTTCTAAGT 141981 |||||| | || ||||| |||||||||||| ||||||| | | || | ||| |||| Sbjct 1405 CACGGTTACCTTCAACACCACGGTTATTTTTCAGGACTAATAAGCTTTCAATTTCCAAGT 1346 Query 141982 GCCACATCGGATAATACGCTGTAGCAGCACCGCCGCGAATACCACCTTGAGAACAAGATT 142041 ||||||| || ||| || ||| || ||||| ||||| | || ||||| || ||||||| Sbjct 1345 GCCACATAGGGTAAAACAGTGTCGCGGCACCCCCGCGTACGCCGCCTTGCGAGCAAGATT 1286 Query 142042 TTACTGCAGTTTGGAAATGTTTCCAGAATGGAATAACACCTGTATGTCGAACTTCACCCA 142101 | || || || ||||| ||||| |||| || ||| ||| ||||| | ||||||| Sbjct 1285 TCACGGCCGTCTGGAAGTGTTTGTAGAACGGGATACAACCGGTATGGAAAGCTTCACCAC 1226 Query 142102 TACCGATCTTAGAACCTTCTGCACGAAGCATGCCAACGTTGATACCGATACCAGCTCGTT 142161 || ||| ||| ||||||| |||| | ||||||||||| || || |||| Sbjct 1225 CACGGATTGGGCTGCCTAGCGCACGAATACGGCCAGCATTGATACCGATCCCTGCGCGTT 1166 Query 142162 TAGAAATATATTCGATAATTGATGCTGAAGTTTTGTTAATAGATTTTAACGAATCACCGG 142221 |||| |||| | || | ||||| ||| ||||| | ||| ||| || Sbjct 1165 GTGAAACGTATTTAACGATAGCACTAGAAGTGGCGTTGATAGAGTCTAAGCTATCGCCAC 1106 Query 142222 CTTCAATAACTACACAACTAGAGAACTGGCGAGTCGGAGTACGAGCACCTGCCATAATTG 142281 || |||| || || ||| ||||||||||| || || | || ||||| |||| Sbjct 1105 ACTCGATAAGCACGCATGAGCTGAATTGGCGAGTCGGCGTCCGTACCCCAGCCATGATTG 1046 Query 142282 GAGTAGGCAATGAAACTTGATGAGTAGAAACGGCATCATAAAAACGA 142328 | ||||| || |||| || | || || |||||||||||||| ||| Sbjct 1045 GCGTAGGTAAGGAAATTTTAAAGGTCGACACGGCATCATAAAAGCGA 999 >seq65234 Length=1614 Score = 141 bits (156), Expect = 1e-28 Identities = 288/425 (68%), Gaps = 12/425 (3%) Strand=Plus/Plus Query 141927 TTTTCATCCACACCTTTGTTATTTTTCAGAACTAATAGGTTCTCTACTTCTAAGTGCCAC 141986 ||||| || | ||| | |||||||| | |||||||| || || | ||||| ||||| Sbjct 695 TTTTCTTCAATTCCTCTATTATTTTTTAAAACTAATAAATTTTCAATTTCTAGATGCCAT 754 Query 141987 ATCGGATAATACGCTGTAGCAGCACCGCCGCGAATACCACCTTGAGAACAAGATTTTACT 142046 || || ||| | | || || || || || | || |||||||||||||||||||||||| Sbjct 755 ATTGGGTAAAAAACAGTTGCGGCCCCTCCTCTAACTCCACCTTGAGAACAAGATTTTACT 814 Query 142047 GCAGTTTGGAAATGTTTCCAGAATGGAATAACACCTGTATGTCGAACTTCACCCATACCG 142106 || ||||||| ||||| | || |||||| || ||||| |||| || | | | Sbjct 815 GCGCTTTGGAAGTGTTTATAAAAAGGAATACATCCGGTATGAAATGCTTCTCCATTTCTG 874 Query 142107 ATCTTAGAACCTTCT---GCACGAAGCATGCCAACGTTGATACCGATACCAGCTCGTTTA 142163 | ||| || | || || |||| ||| |||| || || || || ||||||| | Sbjct 875 A---TAGGACTTCCTAAAGCTCGAATTTGACCAGCGTTAATGCCTATTCCTGCTCGTTGA 931 Query 142164 GAAATATATTCGATAATTGATGCTGAAGTTTT---GTTAATAGATTTTAACGAATCACCG 142220 |||| ||||| | ||| ||| |||| | |||||||| ||||| ||| | Sbjct 932 GAAACATATTTTACAAT---TGCACTAGTTGTAGCATTAATAGAGTTTAAATTATCTGCA 988 Query 142221 GCTTCAATAACTACACAACTAGAGAACTGGCGAGTCGGAGTACGAGCACCTGCCATAATT 142280 |||||| | |||||| | || || ||||| || || | | |||| |||||| Sbjct 989 CATTCAATTAACACACAAGAACTAAATTGACGAGTTGGTGTTCTTACTCCTGACATAATC 1048 Query 142281 GGAGTAGGCAATGAAACTTGATGAGTAGAAACGGCATCATAAAAACGAATAATATGTTTC 142340 || || || | || | || | ||| |||| |||| |||||| || ||||| ||| Sbjct 1049 GGTGTGGGTAGAGATATTTTAAAAGTGGAAATTGCATTATAAAAGCGCTGAATATAATTC 1108 Query 142341 AAACG 142345 | ||| Sbjct 1109 ATACG 1113 >seq209331 Length=9407 Score = 125 bits (138), Expect = 8e-24 Identities = 132/174 (76%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 61290 AGTAAAGGTACGAGCGATAACGTCGCGCTGTTGTTCCGGAGTCAGAGAGTTAAAGCGAAC 61349 ||| ||||| || | || || || |||| ||||| |||||| ||||||||||| || Sbjct 315 AGTGAAGGTTCGGGTAATCACATCCTGCTGCTGTTCTTTAGTCAGTGAGTTAAAGCGGAC 374 Query 61350 TGCATATCCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATC 61409 || || ||||| || || |||||||||||||||||||| || ||||| | | || || Sbjct 375 CGCGTAACCGGAAACGCGAATGGTCAGCTGCGGATATTTCTCTGGATGTTCCATCGCGTC 434 Query 61410 TTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAAT 61463 ||| ||||||| || |||||||||||| ||||| ||||| ||||| || Sbjct 435 CAGCAGCATTTCACGGTTCATAACGTTAACGTTGAGGTGCTGACCGCCTTCGAT 488 >seq213894 Length=28734 Score = 120 bits (132), Expect = 3e-22 Identities = 134/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 61285 CTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGTTGTTCCGGAGTCAGAGAGTTAAAG 61344 |||| ||| |||||||| | ||| || || |||| ||||| |||||| ||||| ||| Sbjct 8982 CTCTGAGTGAAGGTACGGGTGATCACATCCTGCTGCTGTTCTTTAGTCAGCGAGTTGAAG 8923 Query 61345 CGAACTGCATATCCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACT 61404 || || ||||| || || || || ||||| | |||||||||||||||||| | | | Sbjct 8922 CGTACCGCATAGCCCGACACGCGAATGGTTAACTGCGGATATTTTTCCGGGTCTTCCATC 8863 Query 61405 GCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAAT 61463 || || ||| ||||||| || ||||| ||||| ||||| ||||| |||||||| Sbjct 8862 GCTTCCAGCAGCATTTCACGGTTCATCACGTTGACGTTGAGGTGCTGACCCCCTTCAAT 8804 >seq260686 Length=13603 Score = 91.5 bits (100), Expect = 2e-13 Identities = 283/429 (66%), Gaps = 8/429 (2%) Strand=Plus/Minus Query 141903 CCGTAGTCCATATGTCGAATACGGTTTTCATCCACACCTTTGTTATTTTTCAGAACTAAT 141962 |||||||||||||| || | ||||| | || || || ||| || ||||| || | Sbjct 5572 CCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCCGCGGTTGTTCTTCAGCACCAGC 5513 Query 141963 AGGTTCTCTACTTCTAAGTGCCACATCGGATAATACGCTGTAGCAGCACCGCCGCGAATA 142022 ||| | || ||||| | |||||||| || || || || || ||||||||||| | Sbjct 5512 AGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAGGGTCGCTGCACCGCCGCGCACG 5453 Query 142023 CCACCTTGAGAACAAGATTTTACTGCAGTTTGGAAATGTTTCCAGAATGGAATAACACCT 142082 || || ||||| || || || || || || ||||| || || |||| ||||| || | Sbjct 5452 CCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTGCTTATAGAACGGAAT-GCAGCC 5394 Query 142083 GTATGTCGAA--CTTCACCCATACCGATCTTAGAACCTTCTGCACGAAGCATGCCAACGT 142140 | ||| ||| ||||||| | |||| || ||||| | || ||| Sbjct 5393 G-GTGTGGAATGCTTCACCGCCGCGGATCGGGCTGCCCAGCGCACGGATGCGACCGGCGT 5335 Query 142141 TGATACCGATACCAGCTCGTTTAGAAATATATTCGATAATTGATGCT-GAAGTTTTGTTA 142199 | || |||||||| || || | ||||| || | | ||| | ||| || || |||| Sbjct 5334 TAATGCCGATACCGGCACGCTGAGAAACGTACTTCACAATCG-CGCTGGAGGTGGCGTTA 5276 Query 142200 ATAGATTTTAACGAATCACCGGCTTCAATAACTACACAACTAGAGAACTGGCGAGTCGGA 142259 || || | | || ||| ||||| | ||| || ||||||||| ||||| Sbjct 5275 ATGGAATCAAGGCTGTCGCCGCACTCAATCAGTACGCAGGAGCTGAACTGGCGCGTCGGG 5216 Query 142260 GTACGAGCACCTGCCATAATTGGAGTAGGCAATGAAA-CTTGATGAGTAGAAACGGCATC 142318 || || | || | ||||||||| || |||| |||| ||| | | || || | ||||| Sbjct 5215 GTGCGCACGCCGGACATAATTGGCGTCGGCAGCGAAATCTTAAAG-GTGGAGATCGCATC 5157 Query 142319 ATAAAAACG 142327 || ||||| Sbjct 5156 GTAGAAACG 5148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531949252382480