Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_025115.1 Length=40002 Score E Sequences producing significant alignments: (Bits) Value seq248802 524 2e-144 seq129892 206 7e-49 seq159964 96.9 9e-16 >seq248802 Length=12257 Score = 524 bits (580), Expect = 2e-144 Identities = 754/1050 (72%), Gaps = 25/1050 (2%) Strand=Plus/Plus Query 24457 GCCACC---TTCCCGCTCGACACCCCCGTCCTGCTGACCAACCCGCAGGCCTACATCGGC 24513 |||||| ||||||||| |||| || || ||| | ||| || |||||| | || Sbjct 2186 GCCACCGTATTCCCGCTCAACACGCCGGTGCTGATTACCGACGTGCAGGCGGCGGTGGGG 2245 Query 24514 AAGGCCGGCAACAAAGGCACGCTCGCCCGCACGCTCGATGCCATCACCGACCAGACCAAC 24573 || ||||| || |||||||| || |||| | || || ||||||||| ||| Sbjct 2246 AAAGCCGGTGTCAGCGGCACGCTGGCGAAAGCGCTGCAGGCGATTGCCGACCAGAGCAAG 2305 Query 24574 CCGCTCACGGTCGTGGTGCGCGTCGCCGGCGGTGCTTCCGAGGCCGAGACCACGTCCAAC 24633 ||| | ||||| ||||||||||| | | |||| ||| || | ||||| ||| Sbjct 2306 CCGGTAACGGTGGTGGTGCGCGTTGAGGAGGGTGAAGACGAAGCGGCAACCACCAGCAAT 2365 Query 24634 CTGATCGGCGCCACCAACGCGGCCGGCCGGTACACCGGCATGAAGGCGTTGCTGGCCGCC 24693 | ||||||| || | | || |||||| |||||||| ||||| ||| |||| || || Sbjct 2366 ATCATCGGCGGCAGCGATGCTAACGGCCGCTACACCGGGATGAAAGCGCTGCTCGCGGC- 2424 Query 24694 CGCA-ACCGTT-TTGGCGTCGCGCCGCGCATCCTGGCTGTGCCGGGGCTCGACAGCCTGC 24751 ||| |||| ||||||| |||||| || || | ||||||||||| || ||| Sbjct 2425 -GCAGACCGACCTTGGCGTTAAGCCGCGTATTCTCGGCGTGCCGGGGCTGGATTCGCTGG 2483 Query 24752 CAGTCGGGACCGAGCTGGTCACCATCGCGCAGAAGCTGCGCGCCTTCGCCTACCTGTCGG 24811 ||| | |||| ||||| | ||| ||| ||||||||||||||| ||| | |||| Sbjct 2484 AAGTGGCCACCGCGCTGGCGGCAATCTGCCAGCAGCTGCGCGCCTTCGGCTATATCTCGG 2543 Query 24812 CGTACGGCTGCCAGAC--TAAGGAAGAGGCCGTCGCCTATCGCAGTAACTTCGGCCAGCG 24869 | |||||||| | || |||| || || || |||||| |||||| ||||||| Sbjct 2544 CTTACGGCTGTAAAACGGTAAGC--GATGCGCTCAAGTATCGCGAAAACTTCAGCCAGCG 2601 Query 24870 CGAAGCGATGGTGATGTGGCCGGATTTCGTCGGCTGGGACACCGCCGCCAACGCCGAGAC 24929 ||| ||||||||| ||||| || || |||| |||| |||||| ||| ||| | | Sbjct 2602 CGAGCTGATGGTGATCTGGCCCGACTTTGTCGCCTGGAACACCGTGACCAGCGCGGCGGA 2661 Query 24930 CACGCTGTGGGCCACGGCCCGCGCGGTTGGCTTGCGCGCCAAGATCGACAACGACACCGG 24989 || | ||||| |||||||| | ||| |||||||||| ||||| ||||||| ||| Sbjct 2662 AACTGCCTATGCCACCGCCCGCGCCCTCGGCCTGCGCGCCAAAATCGATAACGACAGCGG 2721 Query 24990 CTGGCACAAGACGCTTTCCAACGTGGCTGTGGGTGGCGTGACTGGCCTGTCGCGCGACGT 25049 |||||| || || || || ||||| | || |||||||| ||| | || ||| || Sbjct 2722 CTGGCATAAAACCCTGTCGAACGTCGGCGTCAACGGCGTGACCGGCGTTTC-CGCCTCGG 2780 Query 25050 T-TTCTGGGACCTCCAGGACCCGGCGACCGACGCGG----GCTACCTGAACGCCAACGAG 25104 | ||||||||||| ||| | || |||||| || | ||| |||| |||| || Sbjct 2781 TATTCTGGGACCTGCAGCAGGTGGGGACCGATGCCGATCTGCTGAATGAA-GCCAGCG-- 2837 Query 25105 GTGACCACGCTGGTTCACCGCGACGGCTACCGCTTCTGGGGCTCGCGCACGTGCAGCGCG 25164 | ||||||||| | | | ||||| | ||||||||||||| ||||| || |||| Sbjct 2838 -TCACCACGCTGATCCGCAAAGACGGTTTCCGCTTCTGGGGCAACCGCACCTGTAGCGAT 2896 Query 25165 GATCCGCTGTTCGCCTTCGAGAACTACACCCGCACCGCCCAGGTGCTGGCCGACACCATG 25224 || |||||||||||||| || |||| ||||||| | || |||||| | |||||||||||| Sbjct 2897 GACCCGCTGTTCGCCTTTGAAAACTTCACCCGCTCGGCGCAGGTGATCGCCGACACCATG 2956 Query 25225 GCGGAAGCCCACATGTGGGCAAACGATCTGCCGATGACGCCGACGCTGGTCCGCGATCTG 25284 || || || || |||||||| ||||| |||| |||||||||||||||| ||||| | Sbjct 2957 GCCGATGCGCATATGTGGGCCAACGACAAGCCGCTGACGCCGACGCTGGTGCGCGACATT 3016 Query 25285 CTGGAGGGCATCAACGCCAAGCTGCGCATGCTGACCCGCAACGGCTACCTGCTGGGCGGC 25344 | | || |||||||||||| | || ||||| | | ||| || |||||||||| | Sbjct 3017 ATCGCCGGGATCAACGCCAAGTTCCGTGAGCTGATCAACGCCGGTTATCTGCTGGGCGCC 3076 Query 25345 GCCGCGTGGTTCGACCCGGAA--GCCAACACCAAGGACACGCTGAAGGCCGGCCAGCTCG 25402 | |||| ||| || || ||||||| | |||| | ||||| |||||| |||| Sbjct 3077 AACTGCTGGTACGA--CGAAAGCGCCAACAGCCAGGAGAGCCTGAAAGCCGGCAAGCTGT 3134 Query 25403 CCATCGACTACGACTACACGCCCGTCCCGCCGCTGGAAGACCTCACGTTCCGCCAGCGCA 25462 |||||||||||||| || || || |||||||||||||| || || | || ||||||| Sbjct 3135 ATATCGACTACGACTATACCCCGGTGCCGCCGCTGGAAGATCTGACCCTGCGTCAGCGCA 3194 Query 25463 TCACCGACCGCTACCTGATGCAGTTCGCCG 25492 | |||||| |||||||| | | ||||||| Sbjct 3195 TTACCGACAGCTACCTGGCGAACTTCGCCG 3224 >seq129892 Length=23088 Score = 206 bits (228), Expect = 7e-49 Identities = 815/1257 (65%), Gaps = 75/1257 (6%) Strand=Plus/Minus Query 19969 CTGGAATCCGAGCCGATCACCAAGCTCTTGCAGGAGAACGCCTACCGCGAGCTGGTGTGG 20028 |||| || ||||||||| |||||| || |||||||||||||||||||| || | | Sbjct 1272 CTGGCGTCGGAGCCGATCGTCAAGCTGCTGGAGGAGAACGCCTACCGCGAGGTGATCCTG 1213 Query 20029 CGCCAGCGCGTGAACGACGCGGCGCGCGGGGTCATGCTGGCCTTCGCCGAAGGGGAAG-- 20086 ||||||||| | ||||| |||||| | |||| |||| |||||| || || || Sbjct 1212 CGCCAGCGCATTAACGAAGCGGCGAAAGCCACCATGGTGGCATTCGCC--AGCGGCAGCG 1155 Query 20087 ACCTGGAGCAGATCGCGGCGAACTTCAACGTGCAGCGCTTGACCATCACGCCGGCTGACG 20146 | || || ||| | | || ||| | ||| || || | | || || || Sbjct 1154 ATCTCGACCAGCTTGGGGTCAACAACGGCGTCACCCGTCTGGTGCTGAAACCCGCAGATA 1095 Query 20147 ACACCACCGTGCCGCCGACGCCCGCCGTGATGGAGGGCGACGACTCGCTGCGCGAGCGC- 20205 ||| ||| |||||||||| || || | | ||| |||||||| | || |||| Sbjct 1094 ACAGCACGCTGCCGCCGACCCCGGCGCGGCTTGAGAGCGACGACGACTTCCGTCTGCGCA 1035 Query 20206 --GCACAGGAAGCGTTTGAAGGGCTGTCCGTGGCCGGCCCGACCAAGGCCTACGAGCAGT 20263 || |||| | ||||| |||||| ||| || || ||| | |||||| || | Sbjct 1034 TCGCCCAGG---CCTTTGAGGGGCTGAGCGTAGCGGGGCCGGGCGGGGCCTATGAATATC 978 Query 20264 TCGCGCGCTCGGCTGACGGCCGGGTGGCGGACGCGCGCGCGATCAGCCCGGCCGGCGCGG 20323 ||| ||| || || || || |||||||| | ||| ||||||||| | ||| Sbjct 977 ACGCCCGCAGCGCCGATGGTCGCGTGGCGGATGTCACCGCCATCAGCCCGTCTC---CGG 921 Query 20324 AAGTGGTG---GTCTCGGTGCTGTCGCACCTGAACGACGGCACGGC-AGACGAGAGC--- 20376 ||||| ||| | |||||||||| |||| | || |||| || | || || Sbjct 920 CCGTGGTCACCGTCACCGTGCTGTCGCG--TGAAGGGCG---CGGCGAGGCCAGCGCTGA 866 Query 20377 -CTGCTGGCGACTGTACGCACCGCGTTGAGCGATGACGATACCCGGCCGCTCGGCGACCG 20435 |||||||| || | | ||| ||| || || || || ||| | | || || Sbjct 865 ACTGCTGGCCGTCGTCAACGCGGCGCTGAATGACGAGGAGGTGCGCCCGGTGGCGGATCG 806 Query 20436 TCTGACGGTGCAATCCGCCACCATCGTCCCGTACCGCATCCGTGCCACGCTGTACCTGGC 20495 | | ||||| || || | |||||| ||||||| | |||||||||| || Sbjct 805 CGTCAGCGTGCAGTCGGCAAAAATCGTCGAGTACCGCGTTGAGGCCACGCTGTTTCTCTA 746 Query 20496 ATCGGGGCCGGCGGCCGAGCCGATCCTGGACGCGGCTGGCAAGCGGGCTGACA--CTT-- 20551 | ||||||| ||| |||||||||| | ||| | |||| | ||||| | ||| Sbjct 745 TCCCGGGCCGGAGGCGGAGCCGATCCGCGCCGCCTC-GGCAGCCCGGCTGGCGGCCTTTG 687 Query 20552 --ACCGCACCACGCGCCGGCGCATCGGCCGCGACATCAACCGCTCGGCGATCACGGCGGC 20609 ||||| ||| ||| ||| | || ||||| ||| | | || ||| | ||||| Sbjct 686 TAACCGC-CCAGTCGC-GGC---TGGGGCGCGATATCCGCAGGTCAGCGCTGTATGCGGC 632 Query 20610 ACTACATGTGGAGGGCGTGGA------AAAGCTGGTGCTGCATGAACCGGCCGAAGACAT 20663 || || || ||||| || | | |||||| || || || | || || | | Sbjct 631 GCTGCACGTCGAGGGTGTCCAGCGCGTAGAGCTGGCGCAGCCTG---CTGCTGATG---T 578 Query 20664 CGCGCTCGATCTGACACAGGCGGGCTACTGCACCGGCGTGGATATCGTCAACGGGGGCAC 20723 | ||| ||| || ||||||| |||||||||| | | |||| || || | Sbjct 577 GGTGCTGGATAAAACCCAGGCGGCGTACTGCACCGCTACGCAGATCGCGGTAGGAGGTTC 518 Query 20724 CAGTGAGT-AGCGCAACCCTGTTgcc-gccgaacgcgacgccgctggagcgccgcgccgc 20781 | ||||| | ||| ||| |||| | || | || | | ||| ||| |||||| Sbjct 517 CGATGAGTGACCGC----CTGCTGCCCGTCGG-CTCGTCACAGCTCGAGGTGGCCGCCGC 463 Query 20782 gcagacgggcgcacgcatcgaacgcgTGCCGGTGCCGCTGCGCGACCTGTGGAACCCAGC 20841 | | | || ||| | | | ||||||||||||||||| |||||||||||| Sbjct 462 CGAAGCCTGTGCGCGCCTGCAGCAGCTGCCGGTGCCGCTGCGCACCCTGTGGAACCCGCA 403 Query 20842 CACCTGTCCG--GCCGAGCTGTTGCCCTTCCTGGCCTGGTCGTTTTCCGTGGACCGCTGG 20899 || || ||| |||| ||| | |||| || |||||| | | || ||||| |||||| Sbjct 402 GACTTGCCCGCTGCCG--CTGCTCCCCTATCTCGCCTGGGCCTGGTCGGTGGATCGCTGG 345 Query 20900 AACCCTTCCTGGCCGCTCGCCACCAAGCGCGCCGTGACGGCCGCCTCCTACTTCGTGCAC 20959 | | |||||| | ||| ||| || ||| |||||||| | || | ||| Sbjct 344 GATCAGGAGTGGCCGGAAGAGACCCGGCGTGCGGTGGTCGCCGCCTCGCAGTTTATCCAC 285 Query 20960 CGCAAGAAGGGCACGATCGGCGCGCTTCGCCGCGCGGTGGAGCCGCTGGGCTACCTGATT 21019 ||| |||||||| ||| ||| | ||||| | ||||||||||||||| || || || Sbjct 284 CGCCGCAAGGGCACCATCTCGGCGATCCGCCGGGTGGTGGAGCCGCTGGGGTATCTCATC 225 Query 21020 CGCGTCATCGAGTGGTGGCAGACCAACCCGCCCGGGCCGCGC--GGGTCGTTCCGGCTCG 21077 || | | ||| |||||||||| |||| ||||| | || | ||| |||| | Sbjct 224 CGTATTACCGAATGGTGGCAGAACAAC--------GCCGCACCTGGAACTTTCAGGCTGG 173 Query 21078 ATGTGGGCGTGCTGCAAACCGGCATCGACGAGGCCATGTATGCCGAGCTGGAACGCCTCA 21137 | || || || ||| |||| ||||| |||| ||||| |||||||||||| | | Sbjct 172 ACGTCGGTGTACTGGAAACTGGCATTACTGAGGAGATGTACAACGAGCTGGAACGATTGA 113 Query 21138 TTGACGACGCCAAGCCGTGTTCCCGGCCGATGCT--CGGCCTGCAAATCAGCCTGGA 21192 ||| |||||| || || || | ||| || | ||||||| ||||| |||||| Sbjct 112 TTGGCGACGCGAAACC-CGTCAGCCGCC-ATCTTACCGGCCTGACAATCAACCTGGA 58 Score = 89.7 bits (98), Expect = 1e-13 Identities = 116/157 (74%), Gaps = 4/157 (3%) Strand=Plus/Minus Query 19542 GCGACATCCTCACCACGCCGATCGGCTCGCGGGTGATGCGCCGCGACTACGGC-AGC-GA 19599 |||||||||| || ||| |||||||||||||||||||| ||||||||| || | Sbjct 1695 GCGACATCCTGCTGACCCCGCAGGGCTCGCGGGTGATGCGCCGTGACTACGGCTCGCTGC 1636 Query 19600 GGTCCCCGATCTGATCGACCAGCCGCTGAACCCGGCAACCCGCCTGCGCACCATGTCCGC 19659 ||| || ||| |||||||||||| |||| | | ||||||| | ||||| || Sbjct 1635 TGTCGGCG--CTGCTCGACCAGCCGCAGAACGAGACGCTGCGCCTGCAGATTATGTCGGC 1578 Query 19660 CGCCGTGTCGGCGCTGGTGCGCTGGGAGCCGCGTATC 19696 | | ||||||| |||||||||||||||| ||| Sbjct 1577 CTGCTACATGGCGCTGCTGCGCTGGGAGCCGCGCATC 1541 >seq159964 Length=5345 Score = 96.9 bits (106), Expect = 9e-16 Identities = 272/414 (66%), Gaps = 8/414 (2%) Strand=Plus/Plus Query 9605 CCGGACCAGAACGGGTAGGCCTCATGCGACAAGCTGGACGGCGTGGAGAAGTACGTTTGC 9664 |||| ||||||||| ||||||| || | | || |||||||| |||||||| Sbjct 610 CCGGTCCAGAACGGATAGGCCTGGTGGGTTTTGGCCGATGGCGTGGAAAAGTACGTGGTG 669 Query 9665 CGCCAGTGCTTGTGGATCGCCATGCCGGACGCGACCTTGCGCAGTTCCTGGAA-GCGCGG 9723 ||||| | | ||| | |||||| || || || | | ||| | || || | ||| Sbjct 670 CGCCATTTATCGTGCGTGGCCATGGCGCTGGCCACTTCGTTCAGG-CGTGCAAAGTTCGG 728 Query 9724 CACCCAGAAGTACTCGTCGAAGTACAGGTTGCCGTGGTAGCTCTGCGCGGTGCGGGCGTT 9783 ||||||||| || || ||| ||||||| | ||| |||| |||||||||| ||| Sbjct 729 CACCCAGAAATATTCATCGCAGTACAGATGCCCGCTGTAGGACTGCGCGGTGTTTTTGTT 788 Query 9784 GGTCCCGAGGAAGTACAGCGTCGCCCCGTTGGGCAACACCATCGGGTCGCCCTTCAGCTC 9843 || |||||| ||| ||| |||||| || | || || | ||| ||||| Sbjct 789 AGTGGACAGGAAGCGCAGTTCCGCACCGTTGCTCAGCCGGATAGGATTACCCGTCAGCGT 848 Query 9844 GACGCCGGCTGCGTCCTTCGCGAATTGGATGATGTACTGCTTGAAGACGTGCGCCTGTGC 9903 || ||| | || ||||| | | |||||| ||| || | |||||| || Sbjct 849 GATGCCAAAATACTGCTCCGCGATGTTCACAATGTACGAGCGGAACACCTCCGCCTGCGC 908 Query 9904 CTTGCTGGCCGATAGAAAAATCTGGTTGCGGCCAGTGGTCAGCGCGTCGAT---GAACGC 9960 ||| || || || ||||||||||| | ||| ||||| || | | ||||| Sbjct 909 CTTACTCGCAGAAAGAAAAATCTGCGGGTCGCC---CGTCAGTACGGCATTCTCAAACGC 965 Query 9961 CTCGCGTGCGAAGTACCACGTCGCGCCGATCTGCCGGCTCTTGAGCAGGTTGCG 10014 || || || ||||| || || |||||||| ||||| ||||| | |||||| Sbjct 966 TTCAAACGCAAAATACCAGGTGGCACCGATCTGGCGGCTTTTGAGGATGTTGCG 1019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127126667014328