Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq36623 98.7 6e-16 seq248630 91.5 1e-13 seq175940 91.5 1e-13 seq58283 89.7 3e-13 seq34210 86.0 4e-12 >seq36623 Length=47820 Score = 98.7 bits (108), Expect = 6e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 |||||| || |||||| ||| || || ||||||||||||| ||| |||| |||| || Sbjct 13062 CACCAAGTGCAGAGTGGACTCCTTCTGAATGTTGTAATCGGTGAGCATGCGGCCGTCCTC 13003 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 | || || || || || |||| |||||||| ||| |||| | || || ||||| Sbjct 13002 GAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTG 12943 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || || || | ||||| ||| | |||||| || ||||| || | ||||| || | Sbjct 12942 GATCTT-TGCCTTAACATTGTCAATGGTGTCAGAGGACTCCACCTCGAGGGTGATAGTCT 12884 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | || || || ||||||||||| Sbjct 12883 TGCCGGTGAGGGTCTTCACGAAGATCTGCAT 12853 >seq248630 Length=92124 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||| || || ||| |||||| || ||||||||||| | Sbjct 18042 ACCACCACGGAGACGGAGAACCAAGTGGAGGGTGGACTCTTTCTGAATGTTGTAATCAGC 18101 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||| || | || || | ||| || |||||||| ||||| |||||||| ||| | || Sbjct 18102 AAGAGTGTGTCCATCCTCAAGTTGCTTGCCGGCAAATATCAACCGCTGCTGGTCTGGGGG 18161 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || ||||| || ||| ||| |||| ||| | || ||| || || | Sbjct 18162 GATGCCCTCCTTGTCTTGGATCTTCACTTT-GACATTGTCAATCGTATCGGAAGACTCAA 18220 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| || || | || | || || |||||||| ||||| Sbjct 18221 CCTCGAGGGTGATGGTCTTGTCGGTGAGGGTCTTCACAAAGATTTGCAT 18269 >seq175940 Length=99262 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| || | ||| | ||||| || || ||| ||| || || |||||||| || | Sbjct 58607 ACCACCCCTGAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGC 58548 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || || | || || || ||||| |||| ||||||||| || | || Sbjct 58547 CAGAGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGTGG 58488 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | ||| || ||||| || ||| |||| ||| |||| |||||| || || | Sbjct 58487 GATACCCTCCTTGTCCTGGATCTTCGCCTTCA-CATTGTCAATGGTGTCTGAAGACTCGA 58429 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | |||||| || || || || | || || || ||||||||||| Sbjct 58428 CCTCGAGCGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 58380 Score = 82.4 bits (90), Expect = 5e-11 Identities = 147/212 (69%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 |||||| || || ||| ||| || || |||||||| || | || ||||| | || || Sbjct 58817 CACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGAGTGCGGCCATCCTC 58758 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 | || || || ||||| || | |||||||| ||| | || | ||| || ||||| Sbjct 58757 AAGCTGCTTACCAGCAAAGATGAGGCGCTGCTGGTCTGGTGGGATACCCTCCTTGTCCTG 58698 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || ||| |||| ||| ||| | |||||| || || || || | |||||| || | Sbjct 58697 GATCTTCGCCTTCA-CATTGTCGATGGTGTCTGAAGACTCGACCTCGAGCGTGATTGTCT 58639 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || | || || || |||||||||||| Sbjct 58638 TGCCGGTGAGGGTCTTCACGAAGATCTGCATA 58607 >seq58283 Length=114251 Score = 89.7 bits (98), Expect = 3e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || || ||| ||| ||||| ||||||||||| | || || |||||||| || Sbjct 24802 CACCAGGTGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGCAAGAGTACGTTCGTCCTC 24743 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 | || || || | || |||| ||||| ||| || |||| | || || ||||| Sbjct 24742 GAGCTGCTTGCCTGTGAATATCAGACGCTACTGGTCCGGCGGGATGCCCTCCTTGTCTTG 24683 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 ||| ||| | | ||||| ||| | ||||||| || ||||| || | ||||| || | Sbjct 24682 AATCTTC-GCCTTAACATTGTCGATGGTGTCGGAGGACTCCACCTCGAGGGTGATAGTCT 24624 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | || || | ||||||||||| Sbjct 24623 TGCCAGTGAGGGTCTTCGCGAAGATCTGCAT 24593 >seq34210 Length=56267 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | || | ||||| ||| || ||| ||| || || ||||||||||||| Sbjct 23104 ACCACCACGGAGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGC 23045 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || || | || || ||||| || |||| |||||||| || |||| Sbjct 23044 AAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGG 22985 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || ||||| || || | | || | ||| | ||||||| || |||| Sbjct 22984 GATGCCCTCCTTGTCCTGGATCTT-GGCCTTGACGTTGTCGATGGTGTCGGAGGACTCCA 22926 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||| ||||| || || || || | || || || ||||||||||| Sbjct 22925 CCTCAAGTGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 22877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 326704080736320