Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_025414.1 Length=178171 Score E Sequences producing significant alignments: (Bits) Value seq260686 232 8e-56 seq1462 197 2e-45 seq79071 170 2e-37 seq494847 116 4e-21 seq498467 100 3e-16 seq15764 96.9 4e-15 seq93888 91.5 2e-13 >seq260686 Length=13603 Score = 232 bits (256), Expect = 8e-56 Identities = 429/624 (69%), Gaps = 18/624 (3%) Strand=Plus/Plus Query 41167 TAAGCTGTCGTTACCTACGCCTATTATGGCTGGTGTGCGTACTCCTACGCGTCAGTTTTC 41226 |||| | ||| | || ||||| |||||| | || ||||| || || ||||| ||||| Sbjct 5174 TAAGATTTCGCTGCCGACGCCAATTATGTCCGGCGTGCGCACCCCGACGCGCCAGTTCAG 5233 Query 41227 CAGTTGCGTAGTGATTGAATCAGGTGATTCCCTGGGTTCTCTGAATGCTGTAACCTCT-- 41284 | |||||| ||||||| | || || ||| | ||| | || || ||||| Sbjct 5234 CTCCTGCGTACTGATTGAGTGCGGCGACAGCCTTGATTCCATTAACGCC---ACCTCCAG 5290 Query 41285 -GCGATCGTGAAGTATATTTCACAACGTGCTGGTATCGGTGTTAATGCTGGACACATTCG 41343 ||||| |||||||| |||| || ||||| |||||||| |||| || || | ||| || Sbjct 5291 CGCGATTGTGAAGTACGTTTCTCAGCGTGCCGGTATCGGCATTAACGCCGGTCGCATCCG 5350 Query 41344 CGCAATGGGTTCTAAAATCCGTGGTGGTGAAGCAGTACATACAGGCGTGATCCCGTTCTG 41403 || |||| ||||| || ||||||||| | || || ||| || ||||||| Sbjct 5351 TGCGCTGGGCAGCCCGATCCGCGGCGGTGAAGCATTCCACACCGGCTGCATTCCGTTCTA 5410 Query 41404 GAAACATATTCAGACAGCGGTTAAATCCTGTTCACAAGGTGGCGTTCGTGGTGGTGCTGC 41463 || || | ||||| ||||| || ||||| || || || ||||| || || ||||| || Sbjct 5411 TAAGCACTTCCAGACCGCGGTGAAGTCCTGCTCTCAGGGCGGCGTGCGCGGCGGTGCAGC 5470 Query 41464 AACGTTGTATTATCCGATCTGGCATTTGGAAGTTGAAAACCTGCTGGTTCTGAAAAACAA 41523 || ||| || || || |||||| ||||||| |||| ||||||||| ||||| ||||| Sbjct 5471 GACCCTGTTCTACCCAATGTGGCATCTGGAAGTGGAAAGCCTGCTGGTGCTGAAGAACAA 5530 Query 41524 CAAAGGTGTTGAGAATAACCGCATTCGTCACCTGGATTATGGCGTTCAGCTTAACGATTT 41583 | || ||||| |||||| | ||||| |||| || ||||| ||||| ||| | | Sbjct 5531 CCGCGGCGTTGAAGGCAACCGCGTGCGTCATATGGACTACGGCGTGCAGCTGAACAAGCT 5590 Query 41584 GATGTATAAGCGTTTAATCAATAACGATTACATCACACTGTTCAGCC---CTGACGTTGC 41640 ||||||| |||| | | || || | || || |||||||||| | |||| ||| Sbjct 5591 GATGTATCAGCGCCTGCTGAAGGGTGAAGAGATTACTCTGTTCAGCCCGTCCGACG-TGC 5649 Query 41641 AAATGATCGCCTGTATGATGCTTTCTATCAAGCTGATCAGACTGAGTTCGAAGAACTCTA 41700 | || ||||||| || |||| || || |||||| |||||| || || || Sbjct 5650 -----CTGGCTTGTATGACGCGTTCT-TC--GCCGATCAGGATGAGTTTGAGCGCCTGTA 5701 Query 41701 TACCAGTTTGGAAAAAGACCCAACGGTACGCAAGAAACGCATTAAAGCAGCAGACTTATT 41760 |||| | || |||||| | | |||||| | ||| | || || | ||| | || Sbjct 5702 CACCAAATACGAGAAAGACGACAGCATCCGCAAGCAGCGCGTGAAGGCGGTAGATCTGTT 5761 Query 41761 CCAGTTGCTTGTTCAGGAACGCGC 41784 | | || | | ||||||||||| Sbjct 5762 CTCGCTGATGATGCAGGAACGCGC 5785 Score = 105 bits (116), Expect = 8e-18 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 42974 GAAAAACAACTATCATTCTTCTGGCGACCGGAAGAAGTGGATCTGTCGATCGACCGTATG 43033 ||||| || || || ||||||||||| |||||||||||||| | ||| ||| ||||| Sbjct 7066 GAAAAGCAGCTCTCTTTCTTCTGGCGCCCGGAAGAAGTGGACGTCTCGCGCGATCGTATT 7125 Query 43034 CAGTATGCAAAAATGCCGGAACACGAGAAAATCATTTTTGATTCTAACCTGCAATATCAA 43093 | ||| |||| || ||||| ||| ||| ||| |||||| | ||||| Sbjct 7126 GACTATCAGGCGCTGCCAGAGCACGAAAAACACATCTTTATCAGCAACCTGAAGTATCAG 7185 Query 43094 ACCCTGTTAGATACCATTCAGGGACGTGGCCCTAACCTGGCGTTTCTCCCGATTGCCTCT 43153 || ||| | || | ||||||||||| |||| ||| ||||||| || ||| | ||| Sbjct 7186 ACTCTGCTGGACTCTATTCAGGGACGCAGCCCGAACGTGGCGTTGCTGCCGCTGATCTC- 7244 Query 43154 GATGTTTCAA-TGGAAACGTGGATCGAAACATGGGCTTTC 43192 ||| || ||||||| ||||| ||||| ||||| ||| Sbjct 7245 GATCCCGGAACTGGAAACCTGGATTGAAACCTGGGCGTTC 7284 >seq1462 Length=4781 Score = 197 bits (218), Expect = 2e-45 Identities = 300/426 (70%), Gaps = 6/426 (1%) Strand=Plus/Plus Query 41174 TCGTTACCTACGCCTATTATGGCTGGTGTGCGTACTCCTACGCGTCAGTTTTCCAGTTGC 41233 || ||||||||||| || |||||||| || || || || || || || || | ||| Sbjct 1033 TCCTTACCTACGCCAATCATGGCTGGGGTACGGACGCCGACTCGCCAATTCAGCTCATGC 1092 Query 41234 GTAGTGATTGAATCAGGTGATTCCCTGGGTTCTCTGAATGCTGTAACCTCT---GCGATC 41290 || | || || | || ||| | | | ||| | || || || ||| || ||| Sbjct 1093 GTGCTTATCGAGTGTGGCGATAGCTTAGACTCTATCAACGCC---ACTTCTAGTGCTATC 1149 Query 41291 GTGAAGTATATTTCACAACGTGCTGGTATCGGTGTTAATGCTGGACACATTCGCGCAATG 41350 || || || |||||||||| || || |||||| | |||||||| | ||||| || | Sbjct 1150 GTTAAATACGTTTCACAACGCGCAGGGATCGGTATCAATGCTGGCCGTATTCGTGCGCTA 1209 Query 41351 GGTTCTAAAATCCGTGGTGGTGAAGCAGTACATACAGGCGTGATCCCGTTCTGGAAACAT 41410 || |||||||||||||||||| | ||||| || |||||||||| ||||| Sbjct 1210 GGCAGCCCAATCCGTGGTGGTGAAGCTTTCCATACCGGTTGTATCCCGTTCTACAAACAC 1269 Query 41411 ATTCAGACAGCGGTTAAATCCTGTTCACAAGGTGGCGTTCGTGGTGGTGCTGCAACGTTG 41470 | ||||| || || ||||| || || ||||| ||||| || || ||||| || || || Sbjct 1270 TTCCAGACGGCCGTGAAATCTTGCTCGCAAGGCGGCGTACGCGGGGGTGCCGCGACACTG 1329 Query 41471 TATTATCCGATCTGGCATTTGGAAGTTGAAAACCTGCTGGTTCTGAAAAACAACAAAGGT 41530 | ||| || || ||||| |||||| |||||| | | | || |||||||| ||| ||| Sbjct 1330 TTTTACCCTATGTGGCACTTGGAAATTGAAAGCTTATTAGTCCTGAAAAATAACCGTGGT 1389 Query 41531 GTTGAGAATAACCGCATTCGTCACCTGGATTATGGCGTTCAGCTTAACGATTTGATGTAT 41590 ||||| |||||| | |||||||| ||||| ||||| || | ||| | | |||||| Sbjct 1390 GTTGAAGGTAACCGTGTCCGTCACCTAGATTACGGCGTACAAATCAACAAACTCATGTAT 1449 Query 41591 AAGCGT 41596 | ||| Sbjct 1450 CAACGT 1455 Score = 122 bits (134), Expect = 1e-22 Identities = 296/441 (67%), Gaps = 17/441 (4%) Strand=Plus/Plus Query 42338 GATTGGGAATGGTTGCGCGACGAAATCAAAAAATATGGCTTGCGTAACTCAACTCTTTCC 42397 ||||||||| | || || || |||||||| | | ||||||| ||||||||||| ||||| Sbjct 2209 GATTGGGAAAGCTTACGTGAAGAAATCAAGACACATGGCTTACGTAACTCAACGCTTTCA 2268 Query 42398 GCTTTAATGCCATGTGAGAGTAGTTCTCAAGTAAGCAACTCAACAAACGGGATTGAACCG 42457 || || ||||||| || | ||| || | || | |||||||| || || || Sbjct 2269 GCATTGATGCCATCAGAAACCTCTTCGCAGATTTCTAATGCTACAAACGGTATCGAGCCT 2328 Query 42458 CCTCGCGGTCCTGTGAGTGTGAAATCTTCGAAAGAAGGTTCATTCAAC--CAGGTAGTAC 42515 || ||||| ||| ||| | ||| | |||||||| ||| ||| || ||||| || | Sbjct 2329 CCACGCGGCTATGTCAGTATCAAAGCCTCGAAAGACGGT--ATTTTACGTCAGGTCGTTC 2386 Query 42516 C-GAACCAGAACGATCAGATTGATTTCTATGATTATCTCTGGACAATGGCAAAACGCGGT 42574 | || || || | | | ||| ||||| || ||| |||| | | Sbjct 2387 CAGAGTATGAGCGCTTACA-AGATCAGTATGAGCTGCTATGGGAAATG------CCTTCT 2439 Query 42575 AATAAAGGTTATCTGTCTCATGTTGCTGTTATGCAGAAGTTTGTTGATCAAGCGATCTCT 42634 || | ||||| | | ||| | |||||||||||||||| || ||||| |||||| Sbjct 2440 AACGATGGTTACTTACAACTTGTCGGGATTATGCAGAAGTTTGTCGACCAAGCTATCTCT 2499 Query 42635 GCAAACACCAACTATGATCCGGCTAACTTCCCAGATGGTAAAGTGAAATCTGAAACCATC 42694 ||||||||||||| |||||| | | | | | || ||||| | || | | | Sbjct 2500 TCAAACACCAACTACGATCCGACACGTTACACTGGCGGGAAAGT-ACCGATGCAGCAGTT 2558 Query 42695 ATTG-ATGACCTGCTTTATGCGAACTACTACGGCGTGAAAACTCTGTATTATCACAACAC 42753 | || | |||||||| ||| | | | |||||||||||| || || ||||| ||||| Sbjct 2559 ACTGAAAGACCTGCTGACCGCGTATAAATTCGGCGTGAAAACGCTTTACTATCAAAACAC 2618 Query 42754 CCGCGACGGTGCAGGTGAAGA 42774 || || ||||| |||||| Sbjct 2619 GCGTGATGGTGC---TGAAGA 2636 Score = 95.1 bits (104), Expect = 1e-14 Identities = 254/386 (66%), Gaps = 12/386 (3%) Strand=Plus/Plus Query 42894 AACAGCCAATGTTCTTCGGTGAAGATACTGG----GGTTGCCCGATATGAAGAACAAAAA 42949 || ||||||||||||| || | || || ||||| || ||||| |||||||| Sbjct 2829 AAGAGCCAATGTTCTTTGGCCA----ACCGGTCAACGTTGCGCGCTATGACCAACAAAAA 2884 Query 42950 CATCGCGTATTCGAAACTTTGACTGAAAAACAACTATCATTCTTCTGGCGACCGGAAGAA 43009 || | || |||| ||| |||||| ||||| || ||||| ||||| || |||||| Sbjct 2885 TATGAAATTTTTGAAAAACTGATTGAAAAGCAACTCTCCTTCTTTTGGCGCCCTGAAGAA 2944 Query 43010 GTGGATCTGTCGATCGACCGTATGCAGTATGCAAAAATGCCGGAACACGAGAAAATCATT 43069 || ||| | || ||| || || | | | |||| | || |||||| ||| |||| Sbjct 2945 GTCGATGTCTCACGCGATCGGATCGATTTTCAAAAACTTCCTGAACAC--GAACGTCATA 3002 Query 43070 TTTGATT--CTAACCTGCAATATCAAACCCTGTTAGATACCATTCAGGGACGTGGCCCTA 43127 | | || |||| | |||||||||| || || ||| | || || || || | || | Sbjct 3003 TCTTTTTAAGTAACTTAAAATATCAAACGCTATTGGATTCTATCCAAGGGCGCAGTCCGA 3062 Query 43128 ACCTGGCGTTTCTCCCGATTGCCTCTGATGTTTCAATGGAAACGTGGATCGAAACATGGG 43187 || | ||| | | ||| | ||| | | | ||||||| ||| | ||||| |||| Sbjct 3063 ACGTTGCGCTGTTACCGCTAATCTCCATTCCTGAACTGGAAACATGGGTTGAAACCTGGG 3122 Query 43188 CTTTCAGTGAAACAATTCATAGCCGCAGTTATACACACATTCAGCGTAACTTGCATATCG 43247 | ||| ||||| || || || ||| || || ||| ||||| | | || Sbjct 3123 CGTTCTCCGAAACGATCCACTCACGTTCTTACACTCATATTATTCGTAATATCGTGAACG 3182 Query 43248 ACCCGGCTAAAGAGTTCGACAAAATC 43273 |||||||| || |||||| | ||| Sbjct 3183 ACCCGGCTCTAGTATTCGACGATATC 3208 >seq79071 Length=852 Score = 170 bits (188), Expect = 2e-37 Identities = 145/179 (81%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 51018 GTTGAAGGTGGACAGCACCTAAACGTGAATGTGCTACGTCGCGAAACCCTGAAAGATGCT 51077 ||||||||||||||||| || ||||| || || || ||||||||||| ||| ||||||| Sbjct 366 GTTGAAGGTGGACAGCATCTGAACGTCAACGTTCTGCGTCGCGAAACGCTGGAAGATGCA 307 Query 51078 GTGAAACATCCTGAGAAGTACCCACAGTTAACGATCCGCGTTTCAGGTTATGCAGTTCGC 51137 || ||||||||||| || || || ||| | || ||||| |||||||| ||||| || || Sbjct 306 GTTAAACATCCTGAAAACTATCCGCAGCTGACTATCCGTGTTTCAGGCTATGCCGTGCGT 247 Query 51138 TTTAATGCACTGACTCCAGAACAACAGCGCGACGTTATCGCCAGAACCTTTACGGAAAG 51196 ||||| ||||||| || || || ||||||||||| || || | |||||||| ||||| Sbjct 246 TTTAACTCACTGACGCCTGAGCAGCAGCGCGACGTAATTACCCGTACCTTTACTGAAAG 188 >seq494847 Length=1062 Score = 116 bits (128), Expect = 4e-21 Identities = 190/274 (69%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 40066 CTGAAAACCACACCAGACGATCGCGGGATCATCGTTTCCGCATGGAACCCTGTTGATCTG 40125 ||||||| | || ||| ||| | ||||||||||| ||||||||| | || ||| Sbjct 409 CTGAAAAGCGACCCGGACTCGCGCCGCATCATCGTTTCTGCATGGAACGTCGGCGAACTG 350 Query 40126 GATAAAATGGCATTGCGTCCGTGTCACTGTTTCTTCCAGTTCGTCGTAATCAACGGTAAA 40185 ||| | ||||| || ||||| ||| |||||||||||| ||| |||| || Sbjct 349 GATGAGATGGCGCTGGCCCCGTGCCACGCGTTCTTCCAGTTCTACGTTGCGGACGGCAAG 290 Query 40186 CTGTCTCTACAGTGGTATCAGCGTTCGGTTGATGTCTTCTTAGGGTTGCCGTTCAATATC 40245 || || || ||||||||| || ||| ||||| | || |||||||||||||| Sbjct 289 CTCTCCTGCCAACTGTATCAGCGCTCCTGCGATATCTTCCTCGGCCTGCCGTTCAATATC 230 Query 40246 GCCTCCTACGCTCTCCTGACGCATATTATCGCTGATATTTGCGGGTACGAAGTAGGTGAT 40305 ||| ||||||| | ||| |||||| || || | |||| ||||| |||||| Sbjct 229 GCCAGCTACGCTTTGCTGGTGCATATGATGGCCCAGCAGTGCGACCTGGAAGTGGGTGAT 170 Query 40306 CTGGTTTGGACAGGTGGTGATGTCCATATCTACA 40339 | || ||||| ||||| ||| |||| | |||| Sbjct 169 TTTGTCTGGACCGGTGGCGATACCCATCTGTACA 136 >seq498467 Length=2746 Score = 100 bits (110), Expect = 3e-16 Identities = 244/365 (67%), Gaps = 6/365 (2%) Strand=Plus/Minus Query 154259 CAACGAGAACGCGAACAAAGAC-GCAAGGGTTTTCCCGACACAGCGCGATCTGTTGGCGG 154317 ||| || || || || || || |||||| | |||| || |||||||||||| |||| | Sbjct 2057 CAATGAAAATGCCAATAAGGATAGCAAGG-TGATCCCCACTCAGCGCGATCTGCTGGCCG 1999 Query 154318 GTATCGTAGCGAAACACTTCGCACGTAACCACATTCTACCAAAACACATCGTAGAAGCGC 154377 | ||||| || ||||||| ||| ||| | || || || || | | || || | Sbjct 1998 GGATCGTCGCCAAACACTACGCCCGTCAGCATATGCTGCCGCGTGATGTGGTCAGCGCCC 1939 Query 154378 ATGATTCTGGTGATATCCATTATCATGATCTGGATTACAGCCCGTTCACGCCATACACAA 154437 |||| || || ||||| ||||| ||||| || ||| ||||| || | Sbjct 1938 ATGAGCGCGGCGAGATCCACTATCACGATCTCGACTACTCGCCGTTTTTCCCGATGTTTA 1879 Query 154438 ACTGCTGTCTGGTGGATTTGAAAGGTATGCTGGCTAATGGCTTCAAGATGGGTAACGCAG 154497 ||||| ||| | || || || |||||| | | |||||||| ||||||||||| | Sbjct 1878 ACTGCATGCTGATCGACCTGCGGGGCATGCTGACGCACGGCTTCAAAATGGGTAACGCCG 1819 Query 154498 ACATCGAACCCCCGAAATCAATCGGTGTTGCGACTGCTCTTATGGCACAGATCACCGCAC 154557 | |||||||| || || || ||| || || || | | || ||||||| ||| | Sbjct 1818 AGATCGAACCGCCTAAGTCGATCTCCACCGCCACCGCCGTCACCGCGCAGATCATCGCCC 1759 Query 154558 AGATTGCTTCTCACCAGTACGGCGGGACAACCTTTGCAAACG--TTGATAAAGTGCTGGC 154615 || | || || ||||| || || ||| || || || ||||| |||||||||| Sbjct 1758 AGGTCGCCAGCCATATTTACGGGGGCACCACCATT--AACCGTATTGATGAAGTGCTGGC 1701 Query 154616 TCCGT 154620 |||| Sbjct 1700 GCCGT 1696 >seq15764 Length=1899 Score = 96.9 bits (106), Expect = 4e-15 Identities = 194/285 (68%), Gaps = 2/285 (1%) Strand=Plus/Plus Query 42944 CAAAAACATCGCGTATTCGAAACTTTGACTGAAAAACAACTATCATTCTTCTGGCGACCG 43003 |||||| || | | || |||| ||| ||||| || || || ||||||||||| ||| Sbjct 640 CAAAAATATGACATCTTTGAAAAGCTGATCGAAAAGCAGCTCTCCTTCTTCTGGCGTCCG 699 Query 43004 GAAGAAGTGGATCTGTCGATCGACCGTATGCAGTATGCAAAAATGCCGGAACACGAGAAA 43063 ||||| || || | || ||| || || | || ||||||| ||||| ||| Sbjct 700 GAAGAGGTCGACGTTTCACGCGATCGCATCGATTACCAGGCGCTGCCGGACCACGAAAAA 759 Query 43064 ATCATTTTTGATTCTAACCTGCAATATCAAACCCTGTTAGATACCATTCAGGGACGTGGC 43123 |||||| |||||| ||||||| || ||| | ||| | |||||||| || || Sbjct 760 CATATTTTTATCAGCAACCTGAAATATCAGACGCTGCTGGATTCTATTCAGGGCCGCAGC 819 Query 43124 CCTAACCTGGCGTTTCTCCCGATTGCCTCTGATGTTTCAA-TGGAAACGTGGATCGAAAC 43182 || ||| | ||| | || ||| | ||| ||| | || ||||||| ||||| ||||| Sbjct 820 CCGAACGTCGCGCTGCTGCCGCTGATCTC-GATTCCTGAACTGGAAACCTGGATTGAAAC 878 Query 43183 ATGGGCTTTCAGTGAAACAATTCATAGCCGCAGTTATACACACAT 43227 ||||| ||| || || ||||| ||| ||| || ||||| Sbjct 879 CTGGGCGTTCTCAGAGACGATTCACTCCCGTTCTTACACCCACAT 923 >seq93888 Length=1140 Score = 91.5 bits (100), Expect = 2e-13 Identities = 164/240 (68%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 40087 CGCGGGATCATCGTTTCCGCATGGAACCCTGTTGATCTGGATAAAATGGCATTGCGTCCG 40146 ||| | |||||||| || |||||||| || || | ||||||||||| || || Sbjct 15 CGCCGCATCATCGTATCGGCATGGAATGTTGGAGAGTTAGATAAAATGGCGCTGGCACCT 74 Query 40147 TGTCACTGTTTCTTCCAGTTCGTCGTAATCAACGGTAAACTGTCTCTACAGTGGTATCAG 40206 || || || ||||| ||| ||| | || || ||||| | ||| |||||| Sbjct 75 TGCCATGCCTTTTTCCAATTCTACGTCGTGAATGGCAAACTCAGTTGCCAGCTCTATCAG 134 Query 40207 CGTTCGGTTGATGTCTTCTTAGGGTTGCCGTTCAATATCGCCTCCTACGCTCTCCTGACG 40266 || || ||||||||| ||||| || || || ||||||||| ||| || || ||| Sbjct 135 CGCTCTTGTGATGTCTTTTTAGGCTTACCCTTTAATATCGCCAGCTATGCGCTACTGGTC 194 Query 40267 CATATTATCGCTGATATTTGCGGGTACGAAGTAGGTGATCTGGTTTGGACAGGTGGTGAT 40326 ||||| ||||| | || | |||||| || ||| | ||||||||||| || ||| Sbjct 195 CATATGGTCGCTCAGCAGTGTGATCTCGAAGTCGGCGATTTTGTTTGGACAGGGGGCGAT 254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566462130561960