Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_025425.1 Length=163424 Score E Sequences producing significant alignments: (Bits) Value seq1462 163 3e-35 seq260686 161 1e-34 seq65234 156 4e-33 seq209331 134 1e-26 seq222524 122 9e-23 seq79071 122 9e-23 >seq1462 Length=4781 Score = 163 bits (180), Expect = 3e-35 Identities = 307/446 (69%), Gaps = 4/446 (1%) Strand=Plus/Minus Query 135351 CATCAGGTTATTAATCTGTACGCCGTAGTCAAGATGGCGAATGCGGTTATCTTCCACGCC 135410 ||| || || || || ||||||||||| || || || || | |||||| |||| || || Sbjct 1446 CATGAGTTTGTTGATTTGTACGCCGTAATCTAGGTGACGGACACGGTTACCTTCAACACC 1387 Query 135411 CTTATTGTTCTTTAACAC-AATCAGACTTTCAAACTCTAAATGCCACATTGGGTAATAGA 135469 || || || | || ||| || ||||||| || || |||||||| |||||| | | Sbjct 1386 ACGGTTATTTTTCAGGACTAATAAG-CTTTCAATTTCCAAGTGCCACATAGGGTAAAACA 1328 Query 135470 GAGTCGCCGCCCCGCCACGAATACCGCCTTGTGAGCATGACTTAACGGCAGTCTGAAAAT 135529 | ||||| || || || || | |||||||| ||||| || || ||||| ||||| || | Sbjct 1327 GTGTCGCGGCACCCCCGCGTACGCCGCCTTGCGAGCAAGATTTCACGGCCGTCTGGAAGT 1268 Query 135530 GTTTCCAGAATGGGATAACGCCAGTATGACGAACTTCACCATGCCCGATCTTAGAT-CCT 135588 |||| |||| |||||| || ||||| | |||||||| | ||| | | | ||| Sbjct 1267 GTTTGTAGAACGGGATACAACCGGTATGGAAAGCTTCACCACCACGGAT-TGGGCTGCCT 1209 Query 135589 TCCGCGCGAATCATGCCAGCGTTGATACCGATACCCGCACGCTTGCTAATATACTTGATG 135648 ||| ||||| |||||| ||||||||||| || || || | || || || | | Sbjct 1208 AGCGCACGAATACGGCCAGCATTGATACCGATCCCTGCGCGTTGTGAAACGTATTTAACG 1149 Query 135649 ATTGCATTTGCTGTTTCGTTGATGCCCTGCAATGAGTCATCACTTTCAATCACCACACAC 135708 || ||| | | || ||||||| | || || ||| || || | ||| || Sbjct 1148 ATAGCACTAGAAGTGGCGTTGATAGAGTCTAAGCTATCGCCACACTCGATAAGCACGCAT 1089 Query 135709 GAACTAAATTGGCGTGTTGGGGTACGCACACCAGCCATAATCGGAGTAGGCAGAGAGATT 135768 || || |||||||| || || || || || |||||||| || || ||||| | || ||| Sbjct 1088 GAGCTGAATTGGCGAGTCGGCGTCCGTACCCCAGCCATGATTGGCGTAGGTAAGGAAATT 1029 Query 135769 TGCTTATTCGAAACAGCATTATAAAA 135794 | |||| || |||| |||||| Sbjct 1028 TTAAAGGTCGACACGGCATCATAAAA 1003 >seq260686 Length=13603 Score = 161 bits (178), Expect = 1e-34 Identities = 317/464 (68%), Gaps = 6/464 (1%) Strand=Plus/Minus Query 135307 GGACTAAACAGAGTAATGTAATCCCGTTTAAGGAATCGCTCTACCATCAGGTTATTAATC 135366 || || ||||||||||| | || | || || | |||| |||||| || || | | Sbjct 5638 GGGCTGAACAGAGTAATCTCTTCACCCTTCAGCAGGCGCTGATACATCAGCTTGTTCAGC 5579 Query 135367 TGTACGCCGTAGTCAAGATGGCGAATGCGGTTATCTTCCACGCCCTTATTGTTCTTTAAC 135426 || ||||||||||| | ||| || | |||||| |||| ||||| |||||||| | | Sbjct 5578 TGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCCGCGGTTGTTCTTCAGC 5519 Query 135427 ACAATCAGACTTTCAAACTCTAAATGCCACATTGGGTAATAGAGAGTCGCCGCCCCGCCA 135486 || | ||| ||||| | || | ||||||||||||||| | || ||||| || ||||| Sbjct 5518 ACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAGGGTCGCTGCACCGCCG 5459 Query 135487 CGAATACCGCCTTGTGAGCATGACTTAACGGCAGTCTGAAAATGTTTCCAGAATGGGATA 135546 || | ||||| || ||||| ||||| || || ||||| || || || |||| || || Sbjct 5458 CGCACGCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTGCTTATAGAACGGAATG 5399 Query 135547 ACGCCAGTATGACGAA--CTTCACCATGCCCGATCTTAGATCCTTCCGCGCGAATCATGC 135604 ||| || || ||| ||||||| | |||| || ||| || || | Sbjct 5398 CAGCCGGTGTG--GAATGCTTCACCGCCGCGGATCGGGCTGCCCAGCGCACGGATGCGAC 5341 Query 135605 CAGCGTTGATACCGATACCCGCACGCTTGCTAATATACTTGATGATTGCATTTGCTGTTT 135664 | ||||| || |||||||| ||||||| || ||||| | || || | | || Sbjct 5340 CGGCGTTAATGCCGATACCGGCACGCTGAGAAACGTACTTCACAATCGCGCTGGAGGTGG 5281 Query 135665 CGTTGATGCCCTGCAATG-AGTCATCACTTTCAATCACCACACACGAACTAAATTGGCGT 135723 |||| ||| | ||| | ||| | | ||||||| || || || || || ||||| Sbjct 5280 CGTTAATGGAAT-CAAGGCTGTCGCCGCACTCAATCAGTACGCAGGAGCTGAACTGGCGC 5222 Query 135724 GTTGGGGTACGCACACCAGCCATAATCGGAGTAGGCAGAGAGAT 135767 || ||||| ||||| || | |||||| || || ||||| || || Sbjct 5221 GTCGGGGTGCGCACGCCGGACATAATTGGCGTCGGCAGCGAAAT 5178 Score = 93.3 bits (102), Expect = 4e-14 Identities = 119/162 (73%), Gaps = 4/162 (2%) Strand=Plus/Minus Query 134440 CCTTCTTTCGATCCTTTAA--CCGATACAATCCCGCGAGGCGGTTCAATACCGTTTGTGC 134497 || |||||||| |||||| | |||| | ||||| || |||||||||||||| ||| Sbjct 6514 CCGTCTTTCGACGCTTTAATGCTGATATGA--CCGCGCGGTGGTTCAATACCGTTGGTGG 6457 Query 134498 TGTTAGACACCTGAGAAGACGACTCACAAGGCATCAGCGCCGAAAGCGTACTGTTACGAA 134557 ||| || | ||| ||||| | |||| | |||||||| || || |||||| ||| || | Sbjct 6456 CGTTCGAGATCTGGGAAGAGGTCTCAGACGGCATCAGGGCAGAGAGCGTAGAGTTGCGCA 6397 Query 134558 TGCCATATTTTTTCAGGTCTTCGCGCAGTTCTTCCCAATCCA 134599 ||| | |||||| ||| ||||| ||||||| |||| Sbjct 6396 GGCCGTGGGTTTTCACCGATTCACGCAGCGCTTCCCAGTCCA 6355 >seq65234 Length=1614 Score = 156 bits (172), Expect = 4e-33 Identities = 299/438 (68%), Gaps = 2/438 (0%) Strand=Plus/Plus Query 135358 TTATTAATCTGTACGCCGTAGTCAAGATGGCGAATGCGGTTATCTTCCACGCCCTTATTG 135417 |||||||| ||||| | || |||||||| || | | || ||||| | || |||| Sbjct 656 TTATTAATTTGTACAGCATAATCAAGATGACGTACTCTATTTTCTTCAATTCCTCTATTA 715 Query 135418 TTCTTTAACACAATCAGACTTTCAAACTCTAAATGCCACATTGGGTAATAGAGAGTCGCC 135477 || ||||| || | | | |||||| |||| |||||| ||||||||| | | ||| || Sbjct 716 TTTTTTAAAACTAATAAATTTTCAATTTCTAGATGCCATATTGGGTAAAAAACAGTTGCG 775 Query 135478 GCCCCGCCACGAATACCGCCTTGTGAGCATGACTTAACGGCAGTCTGAAAATGTTTCCAG 135537 ||||| || | || || ||||| || || || || || || | || || ||||| | Sbjct 776 GCCCCTCCTCTAACTCCACCTTGAGAACAAGATTTTACTGCGCTTTGGAAGTGTTTATAA 835 Query 135538 AATGGGATAACGCCAGTATGACGAACTTCACCATGCCCGATCTTAGATCCTTCCGCGCGA 135597 || || ||| || |||||| |||| |||| | ||| | |||| || ||| Sbjct 836 AAAGGAATACATCCGGTATGAAATGCTTCTCCATTTCTGATAGGACTTCCTAAAGCTCGA 895 Query 135598 ATCATGCCAGCGTTGATACCGATACCCGCACGCTTGCTAATATACTTGATGATTGCATTT 135657 || |||||||| || || || || || || | || ||| || | |||||| | Sbjct 896 ATTTGACCAGCGTTAATGCCTATTCCTGCTCGTTGAGAAACATATTTTACAATTGCACTA 955 Query 135658 GCTGTTTCGTTGAT-GCCCTGCAATGAGTCATCACTTTCAATCACCACACACGAACTAAA 135716 | ||| | || || | | ||| | || ||| |||||| | |||||| |||||||| Sbjct 956 GTTGTAGCATTAATAGAGTTTAAATTA-TCTGCACATTCAATTAACACACAAGAACTAAA 1014 Query 135717 TTGGCGTGTTGGGGTACGCACACCAGCCATAATCGGAGTAGGCAGAGAGATTTGCTTATT 135776 ||| || ||||| || | || || | ||||||||| || || ||||| |||| | | Sbjct 1015 TTGACGAGTTGGTGTTCTTACTCCTGACATAATCGGTGTGGGTAGAGATATTTTAAAAGT 1074 Query 135777 CGAAACAGCATTATAAAA 135794 |||| ||||||||||| Sbjct 1075 GGAAATTGCATTATAAAA 1092 >seq209331 Length=9407 Score = 134 bits (148), Expect = 1e-26 Identities = 142/187 (76%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 53979 AATTAGAGAGATTCGGTAAAGGTACGCGCGATAACGTCACGCTGCTGGTCTGGAGTCAGA 54038 ||||| || |||| || ||||| || | || || || ||||||| ||| |||||| Sbjct 301 AATTACAGTGATTTAGTGAAGGTTCGGGTAATCACATCCTGCTGCTGTTCTTTAGTCAGT 360 Query 54039 CTATTGAAGCGCACTGCGTAACCAGAAACGCGAATTGTAAGCTGCGGGTACTTCTCAGGA 54098 || ||||| || |||||||| ||||||||||| || |||||||| || ||||| ||| Sbjct 361 GAGTTAAAGCGGACCGCGTAACCGGAAACGCGAATGGTCAGCTGCGGATATTTCTCTGGA 420 Query 54099 TGTTCAACAGCGTCCAGCAACATTTCTCGTAACAATACGTTAACATTCAAATGCTGGCCA 54158 ||||| | |||||||||| |||||| || || |||||||| || | ||||| || Sbjct 421 TGTTCCATCGCGTCCAGCAGCATTTCACGGTTCATAACGTTAACGTTGAGGTGCTGACCG 480 Query 54159 CCTTCGA 54165 ||||||| Sbjct 481 CCTTCGA 487 >seq222524 Length=8439 Score = 122 bits (134), Expect = 9e-23 Identities = 133/177 (75%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 53990 TTCGGTAAAGGTACGCGCGATAACGTCACGCTGCTGGTCTGGAGTCAGACTATTGAAGCG 54049 ||| ||||||||||||| || |||||||||||||| ||||| |||| | || || || Sbjct 4034 TTCAGTAAAGGTACGCGTAATCACGTCACGCTGCTGTTCTGGCGTCAAAGAGTTAAAACG 4093 Query 54050 CACTGCGTAACCAGAAACGCGAATTGTAAGCTGCGGGTACTTCTCAGGATGTTCAACAGC 54109 ||| || ||||| ||||||||||| || |||||||| || ||||| || || | || || Sbjct 4094 CACGGCATAACCGGAAACGCGAATGGTCAGCTGCGGATATTTCTCCGGGTGCTTCACCGC 4153 Query 54110 GTCCAGCAACATTTCTCGTAACAATACGTTAACATTCAAATGCTGGCCACCTTCGAC 54166 || || | |||| || || ||||| || |||| |||||| || || || || Sbjct 4154 CTCTTCCAGCGTTTCACGGCTCAGGACGTTGACGTTCAGATGCTGACCGCCCTCCAC 4210 >seq79071 Length=852 Score = 122 bits (134), Expect = 9e-23 Identities = 139/187 (74%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 53981 TTAGAGAGATTCGGTAAAGGTACGCGCGATAACGTCACGCTGCTGGTCTGGAGTCAGACT 54040 ||| ||| ||| ||||||||||| | || ||||| |||||||| || || ||||| Sbjct 181 TTAAAGACTTTCAGTAAAGGTACGGGTAATTACGTCGCGCTGCTGCTCAGGCGTCAGTGA 240 Query 54041 ATTGAAGCGCACTGCGTAACCAGAAACGCGAATTGTAAGCTGCGGGTACTTCTCAGGATG 54100 || || ||||| || || || ||||| || || || |||||||| || || |||||||| Sbjct 241 GTTAAAACGCACGGCATAGCCTGAAACACGGATAGTCAGCTGCGGATAGTTTTCAGGATG 300 Query 54101 TTCAACAGCGTCCAGCAACATTTCTCGTAACAATACGTTAACATTCAAATGCTGGCCACC 54160 || ||| || || || | |||| || || ||||| || |||| |||||| ||||| Sbjct 301 TTTAACTGCATCTTCCAGCGTTTCGCGACGCAGAACGTTGACGTTCAGATGCTGTCCACC 360 Query 54161 TTCGACA 54167 ||| ||| Sbjct 361 TTCAACA 367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 519566211045440