Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_025429.1 Length=156446 Score E Sequences producing significant alignments: (Bits) Value seq63939 131 2e-25 seq494847 113 4e-20 seq367800 86.0 6e-12 seq2677 82.4 8e-11 >seq63939 Length=2243 Score = 131 bits (144), Expect = 2e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 142238 CAATCTTCGGTCATCAGATGCGTTTCAATCTGGCTCAAGGCTTTCCTCTTCTCTCCACGA 142297 |||| || ||||| |||||||||||||| ||| | || ||||| || || |||| | Sbjct 1982 CAATTTTTGGTCACCAGATGCGTTTCAACCTGCAGGATGGTTTTCCGCTGGTCACCACCA 2041 Query 142298 AGAAGCTGCATCTGAAGTCGATCATCGTCGAACTCCTGTGGTTCCTCAAAGGCGATACGA 142357 |||| ||| | ||||| || || || |||||||| || ||||||||||| | Sbjct 2042 AGAAATGTCATATCCGCTCGATTATTCATGAGCTGCTGTGGTTTCTGAAAGGCGATACCA 2101 Query 142358 ACATCAAGTATCTTCACGATCACAACGTCAAGATCTGGGATGAATGGGCTGATGCCAATG 142417 ||||| ||||| | || |||||||| ||||||||||| ||||| |||| |||| Sbjct 2102 ACATCGGTTATCTCAAAGAAAACAACGTCTCCATCTGGGATGAGTGGGCGGATGAGAATG 2161 Query 142418 GCAACCTCGGACCTGTCTACGGCAAGCAGTGG 142449 || | ||||| || || || ||||| |||||| Sbjct 2162 GCGATCTCGGCCCGGTGTATGGCAAACAGTGG 2193 >seq494847 Length=1062 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 142240 ATCTTCGGTCATCAGATGCGTTTCAATCTGGCTCAAGGCTTTCCTCTTCTCTCCACGAAG 142299 || || |||||||||||||||||||||||| | || ||||| || || |||| ||| Sbjct 679 ATTTTTGGTCATCAGATGCGTTTCAATCTGCAGGACGGTTTTCCGCTGGTCACCACCAAG 620 Query 142300 AAGCTGCATCTGAAGTCGATCATCGTCGAACTCCTGTGGTTCCTCAAAGGCGATACGAAC 142359 ||| ||| || || ||||| || || ||||||||||| || || || || ||| Sbjct 619 AAGTGCCATTTGCGCTCTATCATTCATGAGCTGCTGTGGTTCCTTAACGGTGACACTAAC 560 Query 142360 ATCAAGTATCTTCACGATCACAACGTCAAGATCTGGGATGAATGGGCTGATGCCAATGGC 142419 ||| || || | || | || || ||||||||| || ||||| |||| || || Sbjct 559 ATCGCCTACCTGAAGGAAAATAAGGTGTCGATCTGGGACGAGTGGGCCGATGAAAAGGGT 500 Query 142420 AACCTCGGACCTGTCTACGGCAAGCAGTGG 142449 ||||||| || || || ||||| |||||| Sbjct 499 GACCTCGGGCCGGTTTATGGCAAACAGTGG 470 >seq367800 Length=224 Score = 86.0 bits (94), Expect = 6e-12 Identities = 86/109 (79%), Gaps = 2/109 (2%) Strand=Plus/Plus Query 142243 TTCGGTCATCAGATGCGTTTCAATCTGGCTCAAGGCTTTCCTCTTC-TCTCCACGAAGAA 142301 |||||| |||||||| ||| ||||||| || || ||||| | || || |||| ||||| Sbjct 117 TTCGGTTGGCAGATGCGCTTCGATCTGGCGCAGGG-TTTCCCCATCGTCACCACCAAGAA 175 Query 142302 GCTGCATCTGAAGTCGATCATCGTCGAACTCCTGTGGTTCCTCAAAGGC 142350 |||||| ||| ||||||||| ||| || ||||||||||| || ||| Sbjct 176 GCTGCACCTGCGCTCGATCATCCACGAGCTGCTGTGGTTCCTGAAGGGC 224 >seq2677 Length=2322 Score = 82.4 bits (90), Expect = 8e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 142240 ATCTTCGGTCATCAGATGCGTTTCAATCTGGCTCAAGGCTTTCCTCTTCTCTCCACGAAG 142299 || |||||||| || ||||| ||| ||||| || ||||| || | || ||||||| Sbjct 2121 ATTTTCGGTCACCAAATGCGCTTCGATCTGCAACAGGGCTTCCCCTTAGTCACCACGAAA 2180 Query 142300 AAGCTGCATCTGAAGTCGATCATCGTCGAACTCCTGTGGTTCCTCAAAGGCGATACGAAC 142359 || |||||| ||||| || ||| || |||||||| | || || || || || Sbjct 2181 AAATGCCATCTGCGCTCGATTATTCACGAGCTGCTGTGGTTTTTAAAGGGAGACACCAAT 2240 Query 142360 ATCAAGTATCTTCACGATCACAACGTCAAGATCTGGGATGAATGGGCTGATGCCAATGGC 142419 ||| || || | || |||| || | ||| |||||||||||||| || | | ||| Sbjct 2241 ATCGCTTACCTAAAAGAGAACAAGGTAACGATTTGGGATGAATGGGCAGACGAGCAGGGC 2300 Query 142420 AACCTCGGACCTGTCTACGG 142439 ||| | || || || || || Sbjct 2301 AACTTAGGTCCGGTTTATGG 2320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 497375953610960