Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_025434.1 Length=62699 Score E Sequences producing significant alignments: (Bits) Value seq201909 412 1e-110 seq369136 159 1e-34 seq194023 131 7e-26 seq203346 82.4 3e-11 >seq201909 Length=21394 Score = 412 bits (456), Expect = 1e-110 Identities = 429/563 (76%), Gaps = 0/563 (0%) Strand=Plus/Minus Query 1780 CGCCATTGCTCCCCAAATACAAAACTAATTTCAGCCAGTGCTTCGTCCATTTTTTCGATG 1839 |||||||| || ||||| | || | |||||||| || | ||||||||| |||||| Sbjct 20626 CGCCATTGGTCGCCAAACTCGAAGCCTATTTCAGCGAGCGAGATGTCCATTTTCTCGATG 20567 Query 1840 AACTCCGGCACCATCTCGTCAAAACCAGCCATGTATTTTTCATCCCGCTCGACCACGACA 1899 |||||||||||||| || ||||| ||| ||||||||||| || ||||| || | | Sbjct 20566 AACTCCGGCACCATTTCCTCAAAGTCAGAAATGTATTTTTCGTCACGCTCAACGATAATG 20507 Query 1900 TAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCGAAGTACCAGGCATCTTTT 1959 | ||| | ||||||||||||||||| ||||||||||| ||||| ||||||||||| || Sbjct 20506 TGATGAATACCTTCACGCTTCATGCGAGGGTCATAGTTCGCGAAATACCAGGCATCCTTG 20447 Query 1960 CGAGTCACCCACATGCTGAATTGCACCTGGGCCATGTAAGCTGATTTTATGGCCTCGAAA 2019 | || |||||||||||| ||||||||||||||||||| || ||| ||||| |||||| Sbjct 20446 CCCGTTACCCACATGCTGTATTGCACCTGGGCCATGTACGCACTTTTGATGGCATCGAAA 20387 Query 2020 CCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTAAACGGACATTTCAGCTCAAGGCCG 2079 ||||| |||||||| ||||||||||| || || || || || || |||| || ||||| Sbjct 20386 CCACCAAGCCGGAACTTCATGAAATCGCGAGAAGTGAAAGGGCACTTCAATTCGAGGCCT 20327 Query 2080 TTGCCGTCACTGCATAATCCATCCGGAGAGCAGGCGGTACGCATACTTTCGTCGCGATAG 2139 || |||||||| | || || || ||||| |||||||||| | || ||||||||| Sbjct 20326 CGCCCATCACTGCAAATCCCGTCAGGTGAGCACGCGGTACGCAAAGAATCATCGCGATAG 20267 Query 2140 ATGATCGGGGATTCAGTAACATTCACGCCGGAAGTAAACTCAAACAGGGCTCTGGCGTCG 2199 | ||| || | ||||| ||| ||||| | || |||||||| || ||||| || | Sbjct 20266 AGGATTGGCGCCTCAGTTACAGATACGCCAGTGGTGAACTCAAAAAGAGCTCTCGCTGAG 20207 Query 2200 TTCTCGTACTGTTTTCCCCATGCCAGGGCTTTGGCGTTAACTTCCGGGGCCACACCCGTG 2259 | || | ||| || ||||| || || || ||||| || || ||||| ||||| || ||| Sbjct 20206 TCTTCATGCTGCTTACCCCACGCAAGTGCCTTGGCATTCACCTCCGGAGCCACGCCAGTG 20147 Query 2260 CAGACCTCAGCCAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGCCATTTCTTTCCG 2319 || ||||| || | || ||||||||||||||| |||||||| | |||||| | ||| Sbjct 20146 CATACCTCTGCTAACAACTCGTGGAAGTAGGACATCTTCATGTCCGTCCATTTGGTGCCG 20087 Query 2320 GAGCGGGGTTTGGCTATCACGTT 2342 ||| || || | || ||||| Sbjct 20086 CTGCGTGGCTTTGAAATGACGTT 20064 Score = 143 bits (158), Expect = 1e-29 Identities = 187/259 (72%), Gaps = 0/259 (0%) Strand=Plus/Minus Query 18383 GATGATGGCAAACCTACGCAAAGAAGCGCGTGGCAGAGAATGCCAGGTACGGATTTATGG 18442 ||| |||| || |||| ||||||||||| ||||| ||||||||||| || | || Sbjct 7168 GATAATGGGTAATTTACGAAAAGAAGCGCGGGGCAGGGAATGCCAGGTCAGGCTGCCAGG 7109 Query 18443 CGTATGCAATGGCAATCCTGAAACTACAGTTTTGGCGCATTACCGAATGGCTGGAATTTG 18502 | |||||||||||| ||||||| || | ||||| ||||| |||| || || || Sbjct 7108 TATCTGCAATGGCAATTCTGAAACGGTCGTACTCGCGCACTACCGGATGGTAGGCATCTG 7049 Query 18503 CGGAACGGGAATGAAGCCAGATGACCTGTTGGCTGCATGGGCCTGTAGTGACTGCCATAA 18562 ||||| |||||||| || |||||||| || | |||||||| || | |||||| | Sbjct 7048 TGGAACTGGAATGAAACCTGATGACCTTTTCGGCGCATGGGCGTGCTCTCGCTGCCACGA 6989 Query 18563 TGAAATCGATCGCCGTACTCGCATTCTCGACAACAACGACGCCAGACTTTACCACCTGGA 18622 ||| || || |||||||||||||| || || || || | | || ||||| Sbjct 6988 TGAGATAGACCGCCGTACTCGCATCACTGATGTGAATGAGGCTCGCGTAGCGCATCTGGA 6929 Query 18623 AGGCGTGATCAGGACGCAG 18641 ||||| |||||||||||| Sbjct 6928 GGGCGTTATCAGGACGCAG 6910 >seq369136 Length=224 Score = 159 bits (176), Expect = 1e-34 Identities = 141/176 (80%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 1780 CGCCATTGCTCCCCAAATACAAAACTAATTTCAGCCAGTGCTTCGTCCATTTTTTCGATG 1839 |||||||| || |||||| | || | ||||||||||| | | ||||||||||||||| Sbjct 48 CGCCATTGGTCGCCAAATTCGAAGCCGATTTCAGCCAGAGATAAATCCATTTTTTCGATG 107 Query 1840 AACTCCGGCACCATCTCGTCAAAACCAGCCATGTATTTTTCATCCCGCTCGACCACGACA 1899 || ||||||||||| || || || | | |||||||||||| || ||||| || | | Sbjct 108 AATTCCGGCACCATTTCTTCGAAGTCGGACATGTATTTTTCGTCACGCTCAACGATTATG 167 Query 1900 TAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCGAAGTACCAGGCATC 1955 | ||| | ||||||||||||||||| ||||||||||| ||||| ||||||||||| Sbjct 168 TGATGAATACCTTCACGCTTCATGCGAGGGTCATAGTTCGCGAAATACCAGGCATC 223 >seq194023 Length=5833 Score = 131 bits (144), Expect = 7e-26 Identities = 189/264 (72%), Gaps = 6/264 (2%) Strand=Plus/Minus Query 8666 ATGGCGTAGAGTTTGCCGTCAACAATACGTTTGTTGTTTGTGTCTACTGCGATTGTTGTT 8725 |||||||| | ||||| |||| || ||||| || ||||| || || | |||| Sbjct 3316 ATGGCGTACATCTTGCCATCAATGATTTTTTTGTCGTCTGTGTTTATAGCCACCGTTGCA 3257 Query 8726 CCATCTGGTATCACGGGTTCCATGCTATCACCAGTAGCCGGAAAACAAAGCACACCAGAA 8785 ||||| | || || |||||||| |||||| ||| ||||| || || | || ||| Sbjct 3256 CCATCAGAGATTTTTGGCTCCATGCTGTCACCACGAGCGGGAAAGCATAGAATTCCCGAA 3197 Query 8786 CCATCACTGTTAGCTCCGACACGGCGCAAGGTTGCTTTTGAGAAGCGTAATTTAAAACCA 8845 ||||| |||| || |||||||| |||| || ||||| || || || | |||| || Sbjct 3196 CCATCGGTGTTGGCACCGACACGCCGCAGTGTGGCTTTAGAAAATCGAAGCATAAATCCG 3137 Query 8846 TTATGATCTTCGCAAT--GA-ACTCTTCCGTCACCGCATGCAAACTCAATGTCTTTCAGA 8902 |||| || || || || || || |||| ||||| ||||| || || ||||| | | Sbjct 3136 TTATAGTCCTC---ATCGGAGACGCTACCGTTGCCGCAAGCAAATTCGATATCTTTTAAA 3080 Query 8903 TATGGCACCTCAACTTCATCATCT 8926 |||| |||||||||||||||||| Sbjct 3079 AATGGAACCTCAACTTCATCATCT 3056 >seq203346 Length=2488 Score = 82.4 bits (90), Expect = 3e-11 Identities = 80/98 (82%), Gaps = 4/98 (4%) Strand=Plus/Minus Query 27543 CAGAACCTTT-CAGGATGACCCTTGAGGATGCCGGTTTGGTGATCGGTGCCTTTCTGTGG 27601 |||||||||| ||||||| ||||||||| |||| | | || |||| || |||||| || Sbjct 1096 CAGAACCTTTTCAGGATGCACCTTGAGGAA-CCGGCTAGCTG-TCGGAGC-TTTCTGGGG 1040 Query 27602 GCCGGAATCCTGTGTGACAAGGTTCATCACTTAAAGGT 27639 |||| ||||||| |||| ||||||||||| |||||| Sbjct 1039 GCCGTCTTCCTGTGCGACAGGGTTCATCACTAAAAGGT 1002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 199292033673460