Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_025437.1 Length=169062 Score E Sequences producing significant alignments: (Bits) Value seq79071 208 8e-49 seq222524 187 3e-42 seq1462 145 8e-30 seq65234 138 1e-27 seq209331 134 1e-26 seq213894 125 8e-24 seq260686 91.5 2e-13 >seq79071 Length=852 Score = 208 bits (230), Expect = 8e-49 Identities = 157/185 (85%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 62329 TTATAGACTCTCAGTAAAGGTACGAGCGATAACGTCACGCTGCTGTTCCGGAGTCAGAGA 62388 ||| ||||| |||||||||||||| | || ||||| |||||||| || || ||||| || Sbjct 181 TTAAAGACTTTCAGTAAAGGTACGGGTAATTACGTCGCGCTGCTGCTCAGGCGTCAGTGA 240 Query 62389 GTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAACTGCGGATATTTTTCTGGATG 62448 |||||| || || ||||| || || |||||||| |||| ||||||||| ||||| ||||| Sbjct 241 GTTAAAACGCACGGCATAGCCTGAAACACGGATAGTCAGCTGCGGATAGTTTTCAGGATG 300 Query 62449 CTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACC 62508 ||||||||||||||||| ||||| |||||||||||||| |||||||| || || ||||| Sbjct 301 TTTAACTGCATCTTCCAGCGTTTCGCGACGCAGAACGTTGACGTTCAGATGCTGTCCACC 360 Query 62509 TTCAA 62513 ||||| Sbjct 361 TTCAA 365 >seq222524 Length=8439 Score = 187 bits (206), Expect = 3e-42 Identities = 151/183 (83%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 62329 TTATAGACTCTCAGTAAAGGTACGAGCGATAACGTCACGCTGCTGTTCCGGAGTCAGAGA 62388 ||| || || |||||||||||||| | || ||||||||||||||||| || |||| ||| Sbjct 4025 TTAAAGGCTTTCAGTAAAGGTACGCGTAATCACGTCACGCTGCTGTTCTGGCGTCAAAGA 4084 Query 62389 GTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAACTGCGGATATTTTTCTGGATG 62448 |||||| || || ||||||||||| || || ||||||| |||||||||||| || || || Sbjct 4085 GTTAAAACGCACGGCATAACCGGAAACGCGAATGGTCAGCTGCGGATATTTCTCCGGGTG 4144 Query 62449 CTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACC 62508 ||| || || |||||||| |||||||| | ||| ||||| |||||||| || ||||| || Sbjct 4145 CTTCACCGCCTCTTCCAGCGTTTCACGGCTCAGGACGTTGACGTTCAGATGCTGACCGCC 4204 Query 62509 TTC 62511 || Sbjct 4205 CTC 4207 >seq1462 Length=4781 Score = 145 bits (160), Expect = 8e-30 Identities = 313/467 (67%), Gaps = 1/467 (0%) Strand=Plus/Minus Query 142341 TTTTACCAAGGCGTTCCATCATAAGGTCATTAATCTGAATTCCGTAGTCCATATGTCTAA 142400 |||||||| | |||| ||| || | || || || | ||||| || | || | | Sbjct 1464 TTTTACCA-GACGTTGATACATGAGTTTGTTGATTTGTACGCCGTAATCTAGGTGACGGA 1406 Query 142401 TACGGTTTTCATCCACGCCTTTGTTATTTTTCAGAACCAACAGGTTCTCTACTTCTAAGT 142460 |||||| | || || || |||||||||||| || || | | | || | ||| |||| Sbjct 1405 CACGGTTACCTTCAACACCACGGTTATTTTTCAGGACTAATAAGCTTTCAATTTCCAAGT 1346 Query 142461 GCCACATCGGATAATACGCTGTAGCAGCACCACCACGAATACCACCTTGAGAACAAGATT 142520 ||||||| || ||| || ||| || ||||| || || | || ||||| || ||||||| Sbjct 1345 GCCACATAGGGTAAAACAGTGTCGCGGCACCCCCGCGTACGCCGCCTTGCGAGCAAGATT 1286 Query 142521 TTACTGCAGTTTGGAAATGTTTCCAGAATGGAATAACACCCGTATGTCGAACTTCACCCA 142580 | || || || ||||| ||||| |||| || ||| ||| ||||| | ||||||| Sbjct 1285 TCACGGCCGTCTGGAAGTGTTTGTAGAACGGGATACAACCGGTATGGAAAGCTTCACCAC 1226 Query 142581 TACCAATCTTAGAACCTTCTGCACGAAGCATACCAACGTTGATACCGATACCAGCTCGTT 142640 || || ||| ||||||| ||| | ||||||||||| || || |||| Sbjct 1225 CACGGATTGGGCTGCCTAGCGCACGAATACGGCCAGCATTGATACCGATCCCTGCGCGTT 1166 Query 142641 TAGAAATATATTCAATAATTGATGCTGAAGTTTTGTTAATAGATTTTAACGAATCACCGG 142700 |||| |||| || || | ||||| ||| ||||| | ||| ||| || Sbjct 1165 GTGAAACGTATTTAACGATAGCACTAGAAGTGGCGTTGATAGAGTCTAAGCTATCGCCAC 1106 Query 142701 CTTCAATAACTACACAACTAGAGAACTGGCGAGTTGGAGTACGAGCACCTGCCATAATTG 142760 || |||| || || ||| |||||||| || || || | || ||||| |||| Sbjct 1105 ACTCGATAAGCACGCATGAGCTGAATTGGCGAGTCGGCGTCCGTACCCCAGCCATGATTG 1046 Query 142761 GGGTTGGCAATGAAACTTGATGAGTAGAAACGGCATCATAAAAACGA 142807 | || || || |||| || | || || |||||||||||||| ||| Sbjct 1045 GCGTAGGTAAGGAAATTTTAAAGGTCGACACGGCATCATAAAAGCGA 999 >seq65234 Length=1614 Score = 138 bits (152), Expect = 1e-27 Identities = 287/425 (68%), Gaps = 12/425 (3%) Strand=Plus/Plus Query 142406 TTTTCATCCACGCCTTTGTTATTTTTCAGAACCAACAGGTTCTCTACTTCTAAGTGCCAC 142465 ||||| || | ||| | |||||||| | ||| || | || || | ||||| ||||| Sbjct 695 TTTTCTTCAATTCCTCTATTATTTTTTAAAACTAATAAATTTTCAATTTCTAGATGCCAT 754 Query 142466 ATCGGATAATACGCTGTAGCAGCACCACCACGAATACCACCTTGAGAACAAGATTTTACT 142525 || || ||| | | || || || || || | || |||||||||||||||||||||||| Sbjct 755 ATTGGGTAAAAAACAGTTGCGGCCCCTCCTCTAACTCCACCTTGAGAACAAGATTTTACT 814 Query 142526 GCAGTTTGGAAATGTTTCCAGAATGGAATAACACCCGTATGTCGAACTTCACCCATACCA 142585 || ||||||| ||||| | || |||||| || ||||| |||| || | | Sbjct 815 GCGCTTTGGAAGTGTTTATAAAAAGGAATACATCCGGTATGAAATGCTTCTCCATTTC-- 872 Query 142586 ATCTTAGAACCTTCT---GCACGAAGCATACCAACGTTGATACCGATACCAGCTCGTTTA 142642 | ||| || | || || |||| |||| |||| || || || || ||||||| | Sbjct 873 -TGATAGGACTTCCTAAAGCTCGAATTTGACCAGCGTTAATGCCTATTCCTGCTCGTTGA 931 Query 142643 GAAATATATTCAATAATTGATGCTGAAGTTTT---GTTAATAGATTTTAACGAATCACCG 142699 |||| ||||| | ||| ||| |||| | |||||||| ||||| ||| | Sbjct 932 GAAACATATTTTACAAT---TGCACTAGTTGTAGCATTAATAGAGTTTAAATTATCTGCA 988 Query 142700 GCTTCAATAACTACACAACTAGAGAACTGGCGAGTTGGAGTACGAGCACCTGCCATAATT 142759 |||||| | |||||| | || || |||||||| || | | |||| |||||| Sbjct 989 CATTCAATTAACACACAAGAACTAAATTGACGAGTTGGTGTTCTTACTCCTGACATAATC 1048 Query 142760 GGGGTTGGCAATGAAACTTGATGAGTAGAAACGGCATCATAAAAACGAATAATATGTTTC 142819 || || || | || | || | ||| |||| |||| |||||| || ||||| ||| Sbjct 1049 GGTGTGGGTAGAGATATTTTAAAAGTGGAAATTGCATTATAAAAGCGCTGAATATAATTC 1108 Query 142820 AAACG 142824 | ||| Sbjct 1109 ATACG 1113 >seq209331 Length=9407 Score = 134 bits (148), Expect = 1e-26 Identities = 134/174 (77%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 62341 AGTAAAGGTACGAGCGATAACGTCACGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAAC 62400 ||| ||||| || | || || || |||||||||| |||||| ||||||||||| || Sbjct 315 AGTGAAGGTTCGGGTAATCACATCCTGCTGCTGTTCTTTAGTCAGTGAGTTAAAGCGGAC 374 Query 62401 TGCATAACCGGATACACGGATGGTCAACTGCGGATATTTTTCTGGATGCTTAACTGCATC 62460 || |||||||| || || ||||||| |||||||||||| |||||||| | | || || Sbjct 375 CGCGTAACCGGAAACGCGAATGGTCAGCTGCGGATATTTCTCTGGATGTTCCATCGCGTC 434 Query 62461 TTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAAT 62514 ||| ||||||| || |||||||||||| ||||| ||||| ||||| || Sbjct 435 CAGCAGCATTTCACGGTTCATAACGTTAACGTTGAGGTGCTGACCGCCTTCGAT 488 >seq213894 Length=28734 Score = 125 bits (138), Expect = 8e-24 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 62336 CTCTCAGTAAAGGTACGAGCGATAACGTCACGCTGCTGTTCCGGAGTCAGAGAGTTAAAG 62395 |||| ||| |||||||| | ||| || || |||||||||| |||||| ||||| ||| Sbjct 8982 CTCTGAGTGAAGGTACGGGTGATCACATCCTGCTGCTGTTCTTTAGTCAGCGAGTTGAAG 8923 Query 62396 CGAACTGCATAACCGGATACACGGATGGTCAACTGCGGATATTTTTCTGGATGCTTAACT 62455 || || ||||| || || || || ||||| ||||||||||||||||| || | | | Sbjct 8922 CGTACCGCATAGCCCGACACGCGAATGGTTAACTGCGGATATTTTTCCGGGTCTTCCATC 8863 Query 62456 GCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAAT 62514 || || ||| ||||||| || ||||| ||||| ||||| ||||| |||||||| Sbjct 8862 GCTTCCAGCAGCATTTCACGGTTCATCACGTTGACGTTGAGGTGCTGACCCCCTTCAAT 8804 >seq260686 Length=13603 Score = 91.5 bits (100), Expect = 2e-13 Identities = 283/429 (66%), Gaps = 8/429 (2%) Strand=Plus/Minus Query 142382 CCGTAGTCCATATGTCTAATACGGTTTTCATCCACGCCTTTGTTATTTTTCAGAACCAAC 142441 |||||||||||||| | | ||||| | || ||||| ||| || ||||| |||| | Sbjct 5572 CCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCCGCGGTTGTTCTTCAGCACCAGC 5513 Query 142442 AGGTTCTCTACTTCTAAGTGCCACATCGGATAATACGCTGTAGCAGCACCACCACGAATA 142501 ||| | || ||||| | |||||||| || || || || || ||||| || || | Sbjct 5512 AGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAGGGTCGCTGCACCGCCGCGCACG 5453 Query 142502 CCACCTTGAGAACAAGATTTTACTGCAGTTTGGAAATGTTTCCAGAATGGAATAACACCC 142561 || || ||||| || || || || || || ||||| || || |||| ||||| || || Sbjct 5452 CCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTGCTTATAGAACGGAAT-GCAGCC 5394 Query 142562 GTATGTCGAA--CTTCACCCATACCAATCTTAGAACCTTCTGCACGAAGCATACCAACGT 142619 | ||| ||| ||||||| | ||| || ||||| | ||| ||| Sbjct 5393 G-GTGTGGAATGCTTCACCGCCGCGGATCGGGCTGCCCAGCGCACGGATGCGACCGGCGT 5335 Query 142620 TGATACCGATACCAGCTCGTTTAGAAATATATTCAATAATTGATGCT-GAAGTTTTGTTA 142678 | || |||||||| || || | ||||| || | | ||| | ||| || || |||| Sbjct 5334 TAATGCCGATACCGGCACGCTGAGAAACGTACTTCACAATCG-CGCTGGAGGTGGCGTTA 5276 Query 142679 ATAGATTTTAACGAATCACCGGCTTCAATAACTACACAACTAGAGAACTGGCGAGTTGGA 142738 || || | | || ||| ||||| | ||| || ||||||||| || || Sbjct 5275 ATGGAATCAAGGCTGTCGCCGCACTCAATCAGTACGCAGGAGCTGAACTGGCGCGTCGGG 5216 Query 142739 GTACGAGCACCTGCCATAATTGGGGTTGGCAATGAAA-CTTGATGAGTAGAAACGGCATC 142797 || || | || | ||||||||| || |||| |||| ||| | | || || | ||||| Sbjct 5215 GTGCGCACGCCGGACATAATTGGCGTCGGCAGCGAAATCTTAAAG-GTGGAGATCGCATC 5157 Query 142798 ATAAAAACG 142806 || ||||| Sbjct 5156 GTAGAAACG 5148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537495226725520