Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_025446.1 Length=157308 Score E Sequences producing significant alignments: (Bits) Value seq286911 109 5e-19 seq462907 100 3e-16 seq189010 98.7 1e-15 seq260686 89.7 5e-13 seq89823 89.7 5e-13 seq302683 86.0 6e-12 seq266160 86.0 6e-12 seq163857 82.4 8e-11 seq140129 82.4 8e-11 >seq286911 Length=6367 Score = 109 bits (120), Expect = 5e-19 Identities = 72/80 (90%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 76785 ATTTGGTGACCCTGGCTGGACTTGAACCAGCGACCAATCGATTATGAGTCGACTGCTCTA 76844 |||||||| ||| ||||| |||||||||||||||| ||||||||||||| |||||||| Sbjct 5712 ATTTGGTGGCCCCTGCTGGGTTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTA 5771 Query 76845 ACCACTGAGCTACGGGGCCA 76864 |||||||||||| ||||||| Sbjct 5772 ACCACTGAGCTAAGGGGCCA 5791 >seq462907 Length=336 Score = 100 bits (110), Expect = 3e-16 Identities = 71/80 (89%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 76785 ATTTGGTGACCCTGGCTGGACTTGAACCAGCGACCAATCGATTATGAGTCGACTGCTCTA 76844 || ||||| ||| ||||||||||||||||||||||| ||||||||||||| ||||||| Sbjct 19 ATCTGGTGGCCCCAGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCGTGCTCTA 78 Query 76845 ACC-ACTGAGCTACGGGGCC 76863 ||| ||||||||| |||||| Sbjct 79 ACCAACTGAGCTATGGGGCC 98 >seq189010 Length=996 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 76791 TGACCCTGGCTGGACTTGAACCAGCGACCAATCGATTATGAGTCGACTGCTCTAACCACT 76850 || |||| |||||| |||||||||||||||| ||||||||||||| ||||||| |||||| Sbjct 777 TGGCCCTTGCTGGATTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTGACCACT 836 Query 76851 GAGCTACGGGGCCA 76864 |||||| |||||| Sbjct 837 GAGCTAAAGGGCCA 850 >seq260686 Length=13603 Score = 89.7 bits (98), Expect = 5e-13 Identities = 269/407 (66%), Gaps = 10/407 (2%) Strand=Plus/Plus Query 4039 CTTCCAACACCCATCATGTCCGGCGTTCGTACCCCAACCCGCCAATTCAGTTCTTGTGTT 4098 || || || || || ||||||||||| || ||||| || ||||| ||||| || || || Sbjct 5184 CTGCCGACGCCAATTATGTCCGGCGTGCGCACCCCGACGCGCCAGTTCAGCTCCTGCGTA 5243 Query 4099 CTTATCAAAACCGGTGACACTTTGGACTCAATCAATGCTACAGCCAAAAGTATTGTTGAT 4158 || || | ||| |||| | || || || || || || ||| ||||| | Sbjct 5244 CTGATTGAGTGCGGCGACAGCCTTGATTCCATTAACGCCACCTCCAGCGCGATTGTGAAG 5303 Query 4159 TATGTATCCAAACGCGCTGGGATCGGATTTGATGTCGGAGCAATTCGTGGCATCGGTAGC 4218 || || || | || || || ||||| || | | ||| || |||| | || ||| Sbjct 5304 TACGTTTCTCAGCGTGCCGGTATCGGCATTAACGCCGGTCGCATCCGTGCGCTGGGCAGC 5363 Query 4219 CCTATCCGAAAAGGTGAAATGGTGCACACAGGTCTG-GTTCCTTTC-ATAA--AATATCT 4274 || ||||| |||||| | ||||| || ||| |||| ||| |||| | | | Sbjct 5364 CCGATCCGCGGCGGTGAAGCATTCCACACCGG-CTGCATTCCGTTCTATAAGCACTTCCA 5422 Query 4275 GACTGGGGCATTAAAGTCTTGCTCTCAAGGCGGTATTCGTGGCGGATCAGC-AACTTGCT 4333 ||| | || | ||||| |||||||| ||||| | || ||||| |||| | | || | Sbjct 5423 GACCGCGG---TGAAGTCCTGCTCTCAGGGCGGCGTGCGCGGCGGTGCAGCGACCCTGTT 5479 Query 4334 ATATCCCTATCTGGCATTATCAATTTGATGATGTTGTGGTCCTGAAGAACAACCGTGGTC 4393 || ||| || |||||| || | || | |||| |||||||||||||| || Sbjct 5480 CTA-CCCAATGTGGCATCTGGAAGTGGAAAGCCTGCTGGTGCTGAAGAACAACCGCGGCG 5538 Query 4394 TTGAAGAGAACCGTGAACGCCGTATCGACTATGGTATTCAGATCAAC 4440 |||||| ||||| | || | ||| ||||| || | ||| | ||| Sbjct 5539 TTGAAGGCAACCGCGTGCGTCATATGGACTACGGCGTGCAGCTGAAC 5585 >seq89823 Length=2041 Score = 89.7 bits (98), Expect = 5e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 76382 CTACTTCAATTTGGCGACGATGGCAGGACTTGAACCTGCGACATATGGATTAACAGTCCA 76441 || ||| |||||||| | || | ||||| ||||| | |||||| ||||||||||||| Sbjct 580 CTTCTTAAATTTGGCTCCTCTGACTGGACTCGAACCAGTGACATACGGATTAACAGTCCG 521 Query 76442 CCGTTCTACCGACTGAACTACA 76463 |||||||||||||||||||||| Sbjct 520 CCGTTCTACCGACTGAACTACA 499 >seq302683 Length=202 Score = 86.0 bits (94), Expect = 6e-12 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 130314 AACTCACCAAACCATTGGGATGGTGAACAAACTGGCAACAAGCACGTCTTCTTCATCTTG 130373 ||||| || ||||||||||| || ||| |||||||||||||| ||||||||| || Sbjct 1 AACTCTCCGAACCATTGGGACGGGGAAGCGACTGGCAACAAGCATTACTTCTTCATGCTG 60 Query 130374 GAAGGTTGTGCGAATCCTGAAGGTACTCGTGGTTTCTACAATGAATATCTGAAGCCGGAA 130433 || ||| || | | || | |||||| ||||||||||| || || ||| ||| Sbjct 61 GACGGTGCTGTGCAGCCGGGTTCTACTCGCGGTTTCTACAACGAGTACCTGCGTAATGAA 120 Query 130434 CTGGATAAACATCGTAAGGTTTTTGAAATGTTGGGTAGTAAAATGAAAGT 130483 |||| | | || || || || || ||| ||| | | || |||||||| Sbjct 121 CTGGTTGAGCACCGCAAAGTGTTCGAACATCTGGCTGGCAAGATGAAAGT 170 >seq266160 Length=9069 Score = 86.0 bits (94), Expect = 6e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 76389 AATTTGGCGACGATGGCAGGACTTGAACCTGCGACATATGGATTAACAGTCCACCGTTCT 76448 |||||||| | || | ||||| ||||| | |||||| ||||||||||||| ||||||| Sbjct 300 AATTTGGCTCCTCTGACTGGACTCGAACCAGTGACATACGGATTAACAGTCCGCCGTTCT 359 Query 76449 ACCGACTGAACTACA 76463 ||||||||||||||| Sbjct 360 ACCGACTGAACTACA 374 >seq163857 Length=4767 Score = 82.4 bits (90), Expect = 8e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 76389 AATTTGGCGACGATGGCAGGACTTGAACCTGCGACATATGGATTAACAGTCCACCGTTCT 76448 ||| |||| | || | ||||| ||||| | |||||| ||||||||||||| ||||||| Sbjct 4364 AATCTGGCTCCTCTGACTGGACTCGAACCAGTGACATACGGATTAACAGTCCGCCGTTCT 4423 Query 76449 ACCGACTGAACTACA 76463 ||||||||||||||| Sbjct 4424 ACCGACTGAACTACA 4438 >seq140129 Length=10074 Score = 82.4 bits (90), Expect = 8e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 76389 AATTTGGCGACGATGGCAGGACTTGAACCTGCGACATATGGATTAACAGTCCACCGTTCT 76448 ||| |||| | || | ||||| ||||| | |||||| ||||||||||||| ||||||| Sbjct 8040 AATATGGCTCCTCTGACTGGACTCGAACCAGTGACATACGGATTAACAGTCCGCCGTTCT 7981 Query 76449 ACCGACTGAACTACA 76463 ||||||||||||||| Sbjct 7980 ACCGACTGAACTACA 7966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500117140470880