Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_025830.1 Length=120938 Score E Sequences producing significant alignments: (Bits) Value seq79071 210 2e-49 seq222524 188 5e-43 seq286911 129 5e-25 seq209331 118 8e-22 seq462907 114 1e-20 seq189010 113 3e-20 seq213894 104 2e-17 >seq79071 Length=852 Score = 210 bits (232), Expect = 2e-49 Identities = 154/179 (86%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 109107 GTGGTCAACATCTGAACGTTAACGTTCTGCGTCGGGAAACTCTGGAAGATGCAGTTAAGC 109166 |||| || ||||||||||| |||||||||||||| ||||| ||||||||||||||||| | Sbjct 359 GTGGACAGCATCTGAACGTCAACGTTCTGCGTCGCGAAACGCTGGAAGATGCAGTTAAAC 300 Query 109167 ATCCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAACT 109226 |||| ||||| |||||||||||||| |||||||| || || ||||| || || ||||||| Sbjct 299 ATCCTGAAAACTATCCGCAGCTGACTATCCGTGTTTCAGGCTATGCCGTGCGTTTTAACT 240 Query 109227 CTCTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGTACCTTTACTGAGAGTCTATAA 109285 | ||||| || || |||||||||||||| || | |||||||||||||| ||||| ||| Sbjct 239 CACTGACGCCTGAGCAGCAGCGCGACGTAATTACCCGTACCTTTACTGAAAGTCTTTAA 181 >seq222524 Length=8439 Score = 188 bits (208), Expect = 5e-43 Identities = 148/177 (84%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 109109 GGTCAACATCTGAACGTTAACGTTCTGCGTCGGGAAACTCTGGAAGATGCAGTTAAGCAT 109168 ||||| ||||||||||| ||||| ||| | || ||||| |||||||| || || ||||| Sbjct 4201 GGTCAGCATCTGAACGTCAACGTCCTGAGCCGTGAAACGCTGGAAGAGGCGGTGAAGCAC 4142 Query 109169 CCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAACTCT 109228 ||||| |||||||||||||||||||| || || ||||||||||| || || ||||||||| Sbjct 4141 CCGGAGAAATATCCGCAGCTGACCATTCGCGTTTCCGGTTATGCCGTGCGTTTTAACTCT 4082 Query 109229 CTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGTACCTTTACTGAGAGTCTATAA 109285 |||| || ||||||||||| ||||| || | |||||||||||||| || || ||| Sbjct 4081 TTGACGCCAGAACAGCAGCGTGACGTGATTACGCGTACCTTTACTGAAAGCCTTTAA 4025 >seq286911 Length=6367 Score = 129 bits (142), Expect = 5e-25 Identities = 76/79 (96%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 9581 ATTTGGTGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCACCTGCTCTA 9640 ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 5712 ATTTGGTGGCCCCTGCTGGGTTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTA 5771 Query 9641 ACCACTGAGCTAAGGGGCC 9659 ||||||||||||||||||| Sbjct 5772 ACCACTGAGCTAAGGGGCC 5790 >seq209331 Length=9407 Score = 118 bits (130), Expect = 8e-22 Identities = 125/165 (76%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 109109 GGTCAACATCTGAACGTTAACGTTCTGCGTCGGGAAACTCTGGAAGATGCAGTTAAGCAT 109168 ||||| || || |||||||||||| || || |||| ||| || || | | ||| Sbjct 479 GGTCAGCACCTCAACGTTAACGTTATGAACCGTGAAATGCTGCTGGACGCGATGGAACAT 420 Query 109169 CCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAACTCT 109228 || || |||||||||||||||||||| || || |||||||| || || ||||||||||| Sbjct 419 CCAGAGAAATATCCGCAGCTGACCATTCGCGTTTCCGGTTACGCGGTCCGCTTTAACTCA 360 Query 109229 CTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGTACCTTTACT 109273 |||||| |||||||||| || || || | || ||||| ||| Sbjct 359 CTGACTAAAGAACAGCAGCAGGATGTGATTACCCGAACCTTCACT 315 >seq462907 Length=336 Score = 114 bits (126), Expect = 1e-20 Identities = 74/80 (93%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 9581 ATTTGGTGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCACCTGCTCTA 9640 || |||||||||| |||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 19 ATCTGGTGGCCCCAGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCGTGCTCTA 78 Query 9641 ACC-ACTGAGCTAAGGGGCC 9659 ||| ||||||||| |||||| Sbjct 79 ACCAACTGAGCTATGGGGCC 98 >seq189010 Length=996 Score = 113 bits (124), Expect = 3e-20 Identities = 71/77 (92%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 9587 TGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCACCTGCTCTAACCACT 9646 |||||| ||||||| ||||||||||||||||||||||||||||| |||||||| |||||| Sbjct 777 TGGCCCTTGCTGGATTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTGACCACT 836 Query 9647 GAGCTAAGGGGCCGTAT 9663 ||||||| ||||| ||| Sbjct 837 GAGCTAAAGGGCCATAT 853 >seq213894 Length=28734 Score = 104 bits (114), Expect = 2e-17 Identities = 125/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 109109 GGTCAACATCTGAACGTTAACGTTCTGCGTCGGGAAACTCTGGAAGATGCAGTTAAGCAT 109168 ||||| || || ||||| ||||| || || |||| ||| || || | | | Sbjct 8813 GGTCAGCACCTCAACGTCAACGTGATGAACCGTGAAATGCTGCTGGAAGCGATGGAAGAC 8872 Query 109169 CCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAACTCT 109228 |||||||||||||||||| | ||||| || || || || ||||| || ||||| ||||| Sbjct 8873 CCGGAAAAATATCCGCAGTTAACCATTCGCGTGTCGGGCTATGCGGTACGCTTCAACTCG 8932 Query 109229 CTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGTACCTTTACTGAGAG 109278 |||||| |||||||||| || || ||| | |||||||| ||| |||| Sbjct 8933 CTGACTAAAGAACAGCAGCAGGATGTGATCACCCGTACCTTCACTCAGAG 8982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384522942532519