Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_026014.1 Length=35814 Score E Sequences producing significant alignments: (Bits) Value seq153597 143 6e-30 seq129892 127 5e-25 seq270004 84.2 5e-12 >seq153597 Length=67050 Score = 143 bits (158), Expect = 6e-30 Identities = 365/545 (67%), Gaps = 28/545 (5%) Strand=Plus/Minus Query 8862 ATTTGTATCGACGACGGCTCCACCAACATCAAGCTGGCATGGACTGAGAACGGCGAACGC 8921 |||| | | ||||||||||| ||||||||||| ||||||||| | || ||||| ||| Sbjct 1727 ATTTTTGTTGACGACGGCTCGACCAACATCAAACTGGCATGGTCAGAAAACGGT--ACGG 1670 Query 8922 CGCA-ACGCC-ATCAGCCCGAACAGCTTCAAGTCGGAATGGTCT-----GC-GCCG---- 8969 | | |||| ||||| ||||||||||||||| | |||||||| || |||| Sbjct 1669 TGAAGACGCTGATCAGTCCGAACAGCTTCAAGCCCGAATGGTCCATGAAGCTGCCGGGGA 1610 Query 8970 -TTCGGCGGCACGCA---GC----CCGCGAACTACATGCTTGATGGCGTGCGCTATGGTT 9021 ||| | || || || ||| |||||| |||| |||| | || | | Sbjct 1609 TTTCCGGTGCGGGCGTGGGCACATCCGAGAACTATGAAATTGACGGCGAGAAATACAGCT 1550 Query 9022 TTGATCCGGTCAG--CGATCGCTTTGTCCAGACGACCGACACGCAATACCAGTACAGCGA 9079 |||| | | | || || || || || |||| || | | || |||||||| || Sbjct 1549 TTGACCAGCTGAGTCCGGATGCCGTGCGCA--CGACGGAGATCCGCTATCAGTACAGTGA 1492 Query 9080 TGTAAATGTCATTGCCATTCATCACGCGCTGGTCAAATCAGGCATCACGCCACAGGAGGT 9139 || || || | ||||| ||||| |||||| | | || || | ||||| ||| | | Sbjct 1491 CGTTAACGTTGTGGCCATCCATCATGCGCTGATGCAGTCCGGGCTGACGCCGCAGCCGAT 1432 Query 9140 GGATGTGGTTGTCACCCTGCCACTGAGCGAGTATTTCGACACAAACGCACAGCCGGACAT 9199 ||| | || || || ||||| ||||||||||| | ||| | ||| |||||| | | Sbjct 1431 CGATATTGTGGTGACGCTGCCGCTGAGCGAGTACCTGGACGAACACGACCAGCCGAATCT 1372 Query 9200 GGCCAACATCAACCGCAAAAAAGCGAACGTTATGCGCCCGGT-GGAGTACCAGAACGGCG 9258 || || ||| | ||||| ||||| ||||| | ||| ||||| | || | | | | Sbjct 1371 TGCAAATATCGAACGCAAGAAAGCCAACGTGAAGCGTCCGGTCAGCGTGCAGGGTCAGGA 1312 Query 9259 AAGCATTCACTATCCGTAACGTGCGGGTTATGCCTGAATCCATTCCGGCTGGCTTTAAAG 9318 ||| || || | ||||| || | || |||| |||||| | || || |||||| | | Sbjct 1311 GAGC-TTTACCGTGCGTAAAGTCAGCGTGCTGCCGGAATCCGTGCCCGCCGGCTTTGACG 1253 Query 9319 CACTGGCTGACATGAGTCCGTTTGAATCCCTGCTGATTGTGGATTTAGGTGGAACCACGC 9378 ||| || ||| | | ||||| ||||| || |||||| | || |||||||||| Sbjct 1252 TTCTGAAAGAGCTGAACGAGCTCGAATCGCTGCTTATCGTGGATATCGGCGGAACCACGC 1193 Query 9379 TGGAT 9383 | ||| Sbjct 1192 TCGAT 1188 >seq129892 Length=23088 Score = 127 bits (140), Expect = 5e-25 Identities = 244/358 (68%), Gaps = 4/358 (1%) Strand=Plus/Minus Query 22124 CACACTGTGGTCGCCGGATACCTGCCCGGTGCACCTGCTGCCTTATCTCGCCTGGGCGTT 22183 ||| |||||| ||| | || |||||| ||| ||||| || |||||||||||||| | Sbjct 420 CACCCTGTGGAACCCGCAGACTTGCCCGCTGCCGCTGCTCCCCTATCTCGCCTGGGCCTG 361 Query 22184 TTCCGTTGACCGCTGGGATCGCAACTGGCCGGAAGAGACAAAGCGACAGGT--TATTCGT 22241 || || || |||||||||| | |||||||||||||| ||| ||| | || Sbjct 360 GTCGGTGGATCGCTGGGATCAGGAGTGGCCGGAAGAGACCCGGCGTGCGGTGGTCGCCGC 301 Query 22242 GATGCATGGCTGATACACCGACACAAAGGGACCATCAGCGCACTGCGCCGGGCCATTGAG 22301 ||| | | || ||||| | ||| || |||||| || | ||||||| | ||| Sbjct 300 CTCGCA--GTTTATCCACCGCCGCAAGGGCACCATCTCGGCGATCCGCCGGGTGGTGGAG 243 Query 22302 CCGCTGGGATACCTCATTCGCGTGTCTGAGTGGTGGGAGTTCGGCGGAGAACCGGGAACA 22361 |||||||| || ||||| || | | || |||||| || | || | ||| ||||| Sbjct 242 CCGCTGGGGTATCTCATCCGTATTACCGAATGGTGGCAGAACAACGCCGCACCTGGAACT 183 Query 22362 TTTACCGTTGAAGTCGGCACGCTGGACAGTGGCGTGACGGAGGAAATGTATCTGGAAATG 22421 || | | || ||||| ||||| | |||| | || ||||| ||||| || || Sbjct 182 TTCAGGCTGGACGTCGGTGTACTGGAAACTGGCATTACTGAGGAGATGTACAACGAGCTG 123 Query 22422 GAGCGGTTGATTGCTGATGCCCGCCCGGTCAGCCGCCACATGACAGGGCTGAATATCA 22479 || || ||||||| || || || ||||||||||| | || || |||| |||| Sbjct 122 GAACGATTGATTGGCGACGCGAAACCCGTCAGCCGCCATCTTACCGGCCTGACAATCA 65 >seq270004 Length=5502 Score = 84.2 bits (92), Expect = 5e-12 Identities = 113/157 (72%), Gaps = 8/157 (5%) Strand=Plus/Minus Query 165 ATAATCCGGTGCAAAATGGGCATAAGTCATCGTCTGCTGAATAGTGCTATGTCCAAGTAT 224 || ||| || |||||||| | |||| ||| ||| | ||| | |||| |||||||| Sbjct 2115 ATGATCTGGAGCAAAATGAGAATAACGCATTGTCATTTTGATATCGGTATGACCAAGTAT 2056 Query 225 TCTCTGCA----AAGTGATGATATTCCCACCATTAATCATGAAGTGAGTGGCAAAGGTAT 280 ||| || | |||| || || |||||||| ||||| |||||| | ||||| || | Sbjct 2055 TCTTTGTAGTACAAGT----ATGTTTCCACCATTCATCATAAAGTGACTTGCAAAAGTGT 2000 Query 281 GCCGTAAAACATGTATCGACTGCCCTTCAGGAAGATC 317 | || |||||||| |||| || ||||||||||| Sbjct 1999 GGCGCAAAACATGCGATAACTGACCGTCAGGAAGATC 1963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113804515041152