Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_026593.1 Length=59419 Score E Sequences producing significant alignments: (Bits) Value seq259146 86.0 2e-12 seq11972 86.0 2e-12 >seq259146 Length=2880 Score = 86.0 bits (94), Expect = 2e-12 Identities = 229/341 (67%), Gaps = 12/341 (4%) Strand=Plus/Plus Query 57392 CAGCCTTACATCGACTCGCCCGAGCCACACCTGATGTACCAGTTCGTCGACCTGGCCGGC 57451 |||||||||||||| || |||||||| ||||| ||||||||| | |||||||| ||| Sbjct 1765 CAGCCTTACATCGATTCACCCGAGCCGCACCTCGCTTACCAGTTCCTTGACCTGGCTGGC 1824 Query 57452 GGGCGGAAACTCAACGACGTCACGAAGGTCTACGACGACGGCCACCACTTCGCGTTAACC 57511 || || || || ||| || | | ||| | |||| | ||| |||| | ||| Sbjct 1825 CCACGTAAGCTTAAAGACCTCGCCGTACTGTACCAGGACGATAAGCACATCGCTTACACC 1884 Query 57512 GGTGCCCGCGGCTGCATGATCTACGTACACCG--CAGCGTCATCGAAACAGTCGGTGGCC 57569 || || ||| ||| | ||| ||||| ||||| || || | || || ||| Sbjct 1885 GGACAGCGAGGCGTGATGCTTTACTACCACCGCTCAGCG--ATTGAGAAGGTTGGCGGCT 1942 Query 57570 TCGACCCAGAGTTCGGCGGCTGGGGATG--GGAACAC-CCCTCCTGGTCCGACCGCATCT 57626 ||||||| | | || ||| || ||| |||||| | ||||| | | ||||| Sbjct 1943 TCGACCCGGTTTACG--GGCGCGGCATGTACGAACACTCTGACCTGGCGCTA-CGCATTC 1999 Query 57627 ACAACGCCGGCCTTACCACATTCCGGTACGGCGACGTGTGC-GGCTCCCACAAGCTCATT 57685 | |||||||| | |||| | || || ||||| ||| |||||| | ||||| ||| Sbjct 2000 ATAACGCCGGGTTAACCAGCTGGGCGTTCGCTGACGT-TGCTGGCTCCGAAAAGCTGATT 2058 Query 57686 CACTCTATGGATGAGCACCTAGAGGTGAAACGTTCCGTCCC 57726 |||| |||| || || || |||| | ||||| || || Sbjct 2059 TACTCGCTGGACGAACATGAAGCGGTGGACCGTTCAGTACC 2099 >seq11972 Length=3077 Score = 86.0 bits (94), Expect = 2e-12 Identities = 229/341 (67%), Gaps = 12/341 (4%) Strand=Plus/Plus Query 57392 CAGCCTTACATCGACTCGCCCGAGCCACACCTGATGTACCAGTTCGTCGACCTGGCCGGC 57451 |||||||||||||| || |||||||| ||||| ||||||||| | |||||||| ||| Sbjct 1962 CAGCCTTACATCGATTCACCCGAGCCGCACCTCGCTTACCAGTTCCTTGACCTGGCTGGC 2021 Query 57452 GGGCGGAAACTCAACGACGTCACGAAGGTCTACGACGACGGCCACCACTTCGCGTTAACC 57511 || || || || ||| || | | ||| | |||| | ||| |||| | ||| Sbjct 2022 CCACGTAAGCTTAAAGACCTCGCCGTACTGTACCAGGACGATAAGCACATCGCTTACACC 2081 Query 57512 GGTGCCCGCGGCTGCATGATCTACGTACACCG--CAGCGTCATCGAAACAGTCGGTGGCC 57569 || || ||| ||| | ||| ||||| ||||| || || | || || ||| Sbjct 2082 GGACAGCGAGGCGTGATGCTTTACTACCACCGCTCAGCG--ATTGAGAAGGTTGGCGGCT 2139 Query 57570 TCGACCCAGAGTTCGGCGGCTGGGGATG--GGAACAC-CCCTCCTGGTCCGACCGCATCT 57626 ||||||| | | || ||| || ||| |||||| | ||||| | | ||||| Sbjct 2140 TCGACCCGGTTTACG--GGCGCGGCATGTACGAACACTCTGACCTGGCGCTA-CGCATTC 2196 Query 57627 ACAACGCCGGCCTTACCACATTCCGGTACGGCGACGTGTGC-GGCTCCCACAAGCTCATT 57685 | |||||||| | |||| | || || ||||| ||| |||||| | ||||| ||| Sbjct 2197 ATAACGCCGGGTTAACCAGCTGGGCGTTCGCTGACGT-TGCTGGCTCCGAAAAGCTGATT 2255 Query 57686 CACTCTATGGATGAGCACCTAGAGGTGAAACGTTCCGTCCC 57726 |||| |||| || || || |||| | ||||| || || Sbjct 2256 TACTCGCTGGACGAACATGAAGCGGTGGACCGTTCAGTACC 2296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 188892718796362