Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_026607.2 Length=159914 Score E Sequences producing significant alignments: (Bits) Value seq65234 192 6e-44 seq1462 143 3e-29 seq286911 134 1e-26 seq260686 132 5e-26 seq462907 118 1e-21 seq189010 114 1e-20 seq234545 84.2 2e-11 >seq65234 Length=1614 Score = 192 bits (212), Expect = 6e-44 Identities = 322/466 (69%), Gaps = 0/466 (0%) Strand=Plus/Plus Query 133252 CATCAAATCATTGATTTGCAGACCATAGTCTAGATGACGAATACGGTTTTCATCTACGCC 133311 ||| || | ||| ||||| | | |||| || |||||||| | | ||||| || | || Sbjct 649 CATTAATTTATTAATTTGTACAGCATAATCAAGATGACGTACTCTATTTTCTTCAATTCC 708 Query 133312 TTTGTTGTTCTTTAATACCAACAGGTTTTCAACCTCAAGATGCCACATTGGATAATAAAG 133371 | | || || ||||| || || | ||||||| || |||||||| ||||| ||| ||| Sbjct 709 TCTATTATTTTTTAAAACTAATAAATTTTCAATTTCTAGATGCCATATTGGGTAAAAAAC 768 Query 133372 AGTAGCTGCACCACCACGTACACCGCCTTGAGAACAAGATTTTACTGCAGTCTGAAAATG 133431 ||| || || || || | || || ||||||||||||||||||||||| | || || || Sbjct 769 AGTTGCGGCCCCTCCTCTAACTCCACCTTGAGAACAAGATTTTACTGCGCTTTGGAAGTG 828 Query 133432 TTTCCAGAAAGGAATTACGCCAGTATGTTTTACTTCGCCATTACCAATTTTTGAGCCTTC 133491 ||| | |||||||| || ||||| | |||| ||||| | || ||| Sbjct 829 TTTATAAAAAGGAATACATCCGGTATGAAATGCTTCTCCATTTCTGATAGGACTTCCTAA 888 Query 133492 AGCTCGAATCATACCGGCGTTGATGCCGATACCAGCTCGCTTGCTGATATACTTAATAAT 133551 ||||||||| ||| ||||| ||||| || || ||||| | | ||| || | ||| Sbjct 889 AGCTCGAATTTGACCAGCGTTAATGCCTATTCCTGCTCGTTGAGAAACATATTTTACAAT 948 Query 133552 ACTGTTACTTGCCGCATTAATAGAATTCAGTGAATCGCCAGCTTCAATAACTACACAAGA 133611 || ||| ||||||||||| || | ||| || |||||| | |||||||| Sbjct 949 TGCACTAGTTGTAGCATTAATAGAGTTTAAATTATCTGCACATTCAATTAACACACAAGA 1008 Query 133612 ACTAAACTGACGAGTAGGAGTACGAGCCCCTGCCATAATCGGTGTAGGCAATGAAATCTG 133671 |||||| |||||||| || || | | |||| |||||||||||| || | || || | Sbjct 1009 ACTAAATTGACGAGTTGGTGTTCTTACTCCTGACATAATCGGTGTGGGTAGAGATATTTT 1068 Query 133672 TCGAGTAGATACAGCGTCATAAAAGCGAATAATATGAGCCAGACGA 133717 ||| || | || | ||||||||| ||||| | || |||| Sbjct 1069 AAAAGTGGAAATTGCATTATAAAAGCGCTGAATATAATTCATACGA 1114 >seq1462 Length=4781 Score = 143 bits (158), Expect = 3e-29 Identities = 339/505 (67%), Gaps = 9/505 (2%) Strand=Plus/Minus Query 133201 CACATC---TGGACTGAACAGTGTGATGTACCCAT-TTTTACCGAGACGTTCCATCATCA 133256 |||||| ||||||||| || | ||| | || ||||||| ||||||| ||| | Sbjct 1500 CACATCCGATGGACTGAATAGCGAGATATCGCCGCCTTTTACC-AGACGTTGATACATGA 1442 Query 133257 AATCATTGATTTGCAGACCATAGTCTAGATGACGAATACGGTTTTCATCTACGCCTTTGT 133316 | |||||||| | || || ||||| ||||| | |||||| | || || || || Sbjct 1441 GTTTGTTGATTTGTACGCCGTAATCTAGGTGACGGACACGGTTACCTTCAACACCACGGT 1382 Query 133317 TGTTCTTTAATACCAACAGGTTTTCAACCTCAAGATGCCACATTGGATAATAAAGAGTAG 133376 | || || | || || | | |||||| || | |||||||| || ||| | || || | Sbjct 1381 TATTTTTCAGGACTAATAAGCTTTCAATTTCCAAGTGCCACATAGGGTAAAACAGTGTCG 1322 Query 133377 CTGCACCACCACGTACACCGCCTTGAGAACAAGATTTTACTGCAGTCTGAAAATGTTTCC 133436 | ||||| || ||||| |||||||| || |||||||| || || ||||| || ||||| Sbjct 1321 CGGCACCCCCGCGTACGCCGCCTTGCGAGCAAGATTTCACGGCCGTCTGGAAGTGTTTGT 1262 Query 133437 AGAAAGGAATTACGCCAGTATGTTTTACTTCGCCATTACCAATTTTTGAGCCTTCAGCTC 133496 |||| || || || ||||| |||| ||| || ||| |||| || | Sbjct 1261 AGAACGGGATACAACCGGTATGGAAAGCTTCACCACCACGGATTGGGCTGCCTAGCGCAC 1202 Query 133497 GAATCATACCGGCGTTGATGCCGATACCAGCTCGCTTGCTGATA--TACTTAATAATACT 133554 |||| || || ||||| ||||| || || || ||| ||| | || |||| ||| Sbjct 1201 GAATACGGCCAGCATTGATACCGATCCCTGCGCG-TTG-TGAAACGTATTTAACGATAGC 1144 Query 133555 GTTACTTGCCGCATTAATAGAATTCAGTGAATCGCCAGCTTCAATAACTACACAAGAACT 133614 || | || || ||||| | | ||||||| || |||| || || || || Sbjct 1143 ACTAGAAGTGGCGTTGATAGAGTCTAAGCTATCGCCACACTCGATAAGCACGCATGAGCT 1084 Query 133615 AAACTGACGAGTAGGAGTACGAGCCCCTGCCATAATCGGTGTAGGCAATGAAATCTGTCG 133674 || || ||||| || || || |||| ||||| || || ||||| || ||||| | Sbjct 1083 GAATTGGCGAGTCGGCGTCCGTACCCCAGCCATGATTGGCGTAGGTAAGGAAATTTTAAA 1024 Query 133675 AGTAGATACAGCGTCATAAAAGCGA 133699 || || || || |||||||||||| Sbjct 1023 GGTCGACACGGCATCATAAAAGCGA 999 >seq286911 Length=6367 Score = 134 bits (148), Expect = 1e-26 Identities = 77/79 (97%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 62446 ATTTGGTGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTA 62505 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 5712 ATTTGGTGGCCCCTGCTGGGTTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTA 5771 Query 62506 ACCACTGAGCTAAGGGGCC 62524 ||||||||||||||||||| Sbjct 5772 ACCACTGAGCTAAGGGGCC 5790 >seq260686 Length=13603 Score = 132 bits (146), Expect = 5e-26 Identities = 271/403 (67%), Gaps = 0/403 (0%) Strand=Plus/Minus Query 133268 TGCAGACCATAGTCTAGATGACGAATACGGTTTTCATCTACGCCTTTGTTGTTCTTTAAT 133327 |||| || ||||| | |||||| | ||||| | || ||||| ||||||||| | Sbjct 5578 TGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCCGCGGTTGTTCTTCAGC 5519 Query 133328 ACCAACAGGTTTTCAACCTCAAGATGCCACATTGGATAATAAAGAGTAGCTGCACCACCA 133387 |||| |||| |||| || || |||||||||||||| || | || || |||||||| || Sbjct 5518 ACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAGGGTCGCTGCACCGCCG 5459 Query 133388 CGTACACCGCCTTGAGAACAAGATTTTACTGCAGTCTGAAAATGTTTCCAGAAAGGAATT 133447 || || ||||| ||||| || || || || || ||||| || || || |||| ||||| Sbjct 5458 CGCACGCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTGCTTATAGAACGGAATG 5399 Query 133448 ACGCCAGTATGTTTTACTTCGCCATTACCAATTTTTGAGCCTTCAGCTCGAATCATACCG 133507 ||| || || | |||| || | || ||| || || || |||| Sbjct 5398 CAGCCGGTGTGGAATGCTTCACCGCCGCGGATCGGGCTGCCCAGCGCACGGATGCGACCG 5339 Query 133508 GCGTTGATGCCGATACCAGCTCGCTTGCTGATATACTTAATAATACTGTTACTTGCCGCA 133567 ||||| ||||||||||| || |||| | ||||| | ||| | | | || Sbjct 5338 GCGTTAATGCCGATACCGGCACGCTGAGAAACGTACTTCACAATCGCGCTGGAGGTGGCG 5279 Query 133568 TTAATAGAATTCAGTGAATCGCCAGCTTCAATAACTACACAAGAACTAAACTGACGAGTA 133627 ||||| |||| || ||||| ||||| | ||| || || || ||||| || || Sbjct 5278 TTAATGGAATCAAGGCTGTCGCCGCACTCAATCAGTACGCAGGAGCTGAACTGGCGCGTC 5219 Query 133628 GGAGTACGAGCCCCTGCCATAATCGGTGTAGGCAATGAAATCT 133670 || || || | || | |||||| || || |||| ||||||| Sbjct 5218 GGGGTGCGCACGCCGGACATAATTGGCGTCGGCAGCGAAATCT 5176 >seq462907 Length=336 Score = 118 bits (130), Expect = 1e-21 Identities = 75/80 (94%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 62446 ATTTGGTGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTA 62505 || |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 19 ATCTGGTGGCCCCAGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCGTGCTCTA 78 Query 62506 ACC-ACTGAGCTAAGGGGCC 62524 ||| ||||||||| |||||| Sbjct 79 ACCAACTGAGCTATGGGGCC 98 >seq189010 Length=996 Score = 114 bits (126), Expect = 1e-20 Identities = 71/76 (93%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 62452 TGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTAACCACT 62511 |||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||| Sbjct 777 TGGCCCTTGCTGGATTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTGACCACT 836 Query 62512 GAGCTAAGGGGCCGTA 62527 ||||||| ||||| || Sbjct 837 GAGCTAAAGGGCCATA 852 >seq234545 Length=12910 Score = 84.2 bits (92), Expect = 2e-11 Identities = 130/175 (74%), Gaps = 8/175 (5%) Strand=Plus/Minus Query 62363 AATTTGGCTGGGAATACTGGGCT-CGAACCAGTGCATCCCGGAATCAAAATCCGGTGCCT 62421 |||||||||||| | | ||| | |||||| | || | || |||| || || | |||| Sbjct 12221 AATTTGGCTGGGG-TGCAGGGATTCGAACCCCGGAATGCTGGTATCAGAAACCAGAGCCT 12163 Query 62422 TACCAACTTGGCTAATTCCCAATTAT-TTGGTGGCCCCTGCTGGACTTGAACCAGCGACC 62480 ||||| |||||| | |||||| | |||||||| || | ||| | ||||| | |||| Sbjct 12162 TACCA-CTTGGCGACACCCCAATAAAATTGGTGGCTACTACGGGAATCGAACCTGTGACC 12104 Query 62481 A-AGCGATTATGAGTCGCCTGCTCTAACCA-CTGAGCTAAGGGGCCGTAATTCTA 62533 ||| ||||||||| ||||||||||| |||||||||| ||| ||||| || Sbjct 12103 CCAGC-ATTATGAGTGCTGTGCTCTAACCAGCTGAGCTAAGTAGCC-TAATTTTA 12051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 508404301673840